mRNA_L-elsbetiae_contig9877.18814.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9877.18814.1
Unique NamemRNA_L-elsbetiae_contig9877.18814.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9877.18814.1 vs. uniprot
Match: D8LEN3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEN3_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.360e-17
Identity = 78/174 (44.83%), Postives = 82/174 (47.13%), Query Frame = -3 
Query:    9 RTQPISPSGIRAILKGFSVLPWQFRDPPRDGTSWNFPSRTKPAVGGGATSTTAAAANPGEPALAPAAXXXXXXXXXXXEGVRGHDGSVGADGSTSGTNGGESALAAEGGXXXXXXXXSAPSP------SRLRGFLGTRWRAGVGNPGSPPRIVRSRSMNVVSDIEEGKGGWPLR 512
            R  PISPSGIRAILKGFSVLPWQFR+P RDG  WNF S T    G  A  T A AA         AA           EG  G        GS S   G  SA              S PSP      S  R    +   A V N G+P R+VRS SM VVSDIEEGKG W  R
Sbjct:  140 RALPISPSGIRAILKGFSVLPWQFREPSRDGNRWNFSSGT---AGASAEPTAAGAAG--------AAATGDHAQTAVAEGRNG--------GSASEAGGVASA--------------SPPSPVLSTSASAQRSSPRSGLMANVENLGTP-RLVRSNSMTVVSDIEEGKGRWLRR 279
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9877.18814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEN3_ECTSI2.360e-1744.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9877contigL-elsbetiae_contig9877:1094..2063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size970
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9877.18814.1prot_L-elsbetiae_contig9877.18814.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9877 1133..1846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817047.4756024-UTR-L-elsbetiae_contig9877:1093..11321622817047.4756024-UTR-L-elsbetiae_contig9877:1093..1132Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9877 1094..1132 +
1691684007.5247638-UTR-L-elsbetiae_contig9877:1093..11321691684007.5247638-UTR-L-elsbetiae_contig9877:1093..1132Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9877 1094..1132 +
1622817047.5043972-UTR-L-elsbetiae_contig9877:1846..20631622817047.5043972-UTR-L-elsbetiae_contig9877:1846..2063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9877 1847..2063 +
1691684007.5492413-UTR-L-elsbetiae_contig9877:1846..20631691684007.5492413-UTR-L-elsbetiae_contig9877:1846..2063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9877 1847..2063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817047.4899337-CDS-L-elsbetiae_contig9877:1132..18461622817047.4899337-CDS-L-elsbetiae_contig9877:1132..1846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9877 1133..1846 +
1691684007.5379858-CDS-L-elsbetiae_contig9877:1132..18461691684007.5379858-CDS-L-elsbetiae_contig9877:1132..1846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9877 1133..1846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9877.18814.1

>prot_L-elsbetiae_contig9877.18814.1 ID=prot_L-elsbetiae_contig9877.18814.1|Name=mRNA_L-elsbetiae_contig9877.18814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
MSLTTFMERLRTIRGGLPGFPTPALHLVPRKPLSREGEGADAPAAAAPPP
PSAANALSPPFVPLVLPSAPTDPSCPRTPSPAAAAAATAPAAAGANAGSP
GLAAAAVVLVAPPPTAGLVRLGKFHEVPSRGGSLNCHGSTENPLRMARIP
EGDIGWVLCRLPLPLPLLLLLLLPAAVPFLLLWSPLTSLPSRAPRPRLCC
VHSDVAVVVAEEVLAGDVFNDNAAGGTGYPSGMYAAS*
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mRNA from alignment at L-elsbetiae_contig9877:1094..2063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9877.18814.1 ID=mRNA_L-elsbetiae_contig9877.18814.1|Name=mRNA_L-elsbetiae_contig9877.18814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=970bp|location=Sequence derived from alignment at L-elsbetiae_contig9877:1094..2063+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGCCCATCGTAGCGGCCAGCCTCCCTTCCCCTCTTCGATGTCGCTGAC
CACATTCATGGAGCGGCTGCGAACAATCCGCGGCGGGCTGCCCGGGTTTC
CGACGCCCGCTCTCCACCTGGTGCCCAGAAAGCCCCTCAGCCGAGAGGGG
GAGGGGGCGGACGCGCCGGCTGCTGCTGCGCCCCCTCCGCCTTCCGCCGC
CAATGCACTTTCGCCGCCGTTCGTCCCGCTGGTGCTGCCGTCAGCACCAA
CAGATCCATCGTGCCCCCGCACCCCCTCCCCGGCCGCCGCGGCCGCCGCC
ACCGCCCCGGCGGCTGCAGGTGCCAACGCGGGCTCTCCGGGATTGGCGGC
GGCGGCGGTGGTGCTTGTGGCGCCACCACCAACGGCAGGTTTAGTACGGC
TGGGGAAGTTCCACGAGGTTCCGTCTCGCGGCGGGTCTCTGAACTGCCAT
GGCAGCACTGAGAACCCTTTGAGGATGGCTCGGATTCCGGAAGGGGATAT
CGGCTGGGTTCTGTGTCGGCTTCCCTTGCCGCTGCCGCTGCTGCTGCTGC
TGTTGCTGCCGGCTGCGGTCCCGTTTCTTCTCCTCTGGTCTCCGCTGACA
TCGCTGCCGTCGCGGGCGCCACGGCCTCGGCTCTGCTGCGTCCATTCGGA
TGTCGCCGTGGTGGTAGCAGAAGAGGTCCTCGCCGGGGACGTCTTCAATG
ATAACGCCGCCGGTGGTACTGGGTACCCTTCGGGGATGTACGCGGCGTCA
TGACAGCAGCAGCTGCTGCTGTTGCTGCTGTTGCTGCTGCTGCTGCTTCC
GCTGTATCCATCTGCTCTCGTCCTTTCGCGCCCTGTAGCTGCCTCATCGG
CGATGACTCCTCCGTGTGCGAGGATGACTGGCTCGAGATCGGCCACCGCT
GTCGCGGCGGCATCACAGCAGGCGGCGCTGAAAACACCAGCAGCGACGCC
GCTGTGCCCGCCTCCCTCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9877:1094..2063+

>mRNA_L-elsbetiae_contig9877.18814.1 ID=mRNA_L-elsbetiae_contig9877.18814.1|Name=mRNA_L-elsbetiae_contig9877.18814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig9877:1094..2063+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCTGACCACATTCATGGAGCGGCTGCGAACAATCCGCGGCGGGCT
GCCCGGGTTTCCGACGCCCGCTCTCCACCTGGTGCCCAGAAAGCCCCTCA
GCCGAGAGGGGGAGGGGGCGGACGCGCCGGCTGCTGCTGCGCCCCCTCCG
CCTTCCGCCGCCAATGCACTTTCGCCGCCGTTCGTCCCGCTGGTGCTGCC
GTCAGCACCAACAGATCCATCGTGCCCCCGCACCCCCTCCCCGGCCGCCG
CGGCCGCCGCCACCGCCCCGGCGGCTGCAGGTGCCAACGCGGGCTCTCCG
GGATTGGCGGCGGCGGCGGTGGTGCTTGTGGCGCCACCACCAACGGCAGG
TTTAGTACGGCTGGGGAAGTTCCACGAGGTTCCGTCTCGCGGCGGGTCTC
TGAACTGCCATGGCAGCACTGAGAACCCTTTGAGGATGGCTCGGATTCCG
GAAGGGGATATCGGCTGGGTTCTGTGTCGGCTTCCCTTGCCGCTGCCGCT
GCTGCTGCTGCTGTTGCTGCCGGCTGCGGTCCCGTTTCTTCTCCTCTGGT
CTCCGCTGACATCGCTGCCGTCGCGGGCGCCACGGCCTCGGCTCTGCTGC
GTCCATTCGGATGTCGCCGTGGTGGTAGCAGAAGAGGTCCTCGCCGGGGA
CGTCTTCAATGATAACGCCGCCGGTGGTACTGGGTACCCTTCGGGGATGT
ACGCGGCGTCATGAATGTCGCTGACCACATTCATGGAGCGGCTGCGAACA
ATCCGCGGCGGGCTGCCCGGGTTTCCGACGCCCGCTCTCCACCTGGTGCC
CAGAAAGCCCCTCAGCCGAGAGGGGGAGGGGGCGGACGCGCCGGCTGCTG
CTGCGCCCCCTCCGCCTTCCGCCGCCAATGCACTTTCGCCGCCGTTCGTC
CCGCTGGTGCTGCCGTCAGCACCAACAGATCCATCGTGCCCCCGCACCCC
CTCCCCGGCCGCCGCGGCCGCCGCCACCGCCCCGGCGGCTGCAGGTGCCA
ACGCGGGCTCTCCGGGATTGGCGGCGGCGGCGGTGGTGCTTGTGGCGCCA
CCACCAACGGCAGGTTTAGTACGGCTGGGGAAGTTCCACGAGGTTCCGTC
TCGCGGCGGGTCTCTGAACTGCCATGGCAGCACTGAGAACCCTTTGAGGA
TGGCTCGGATTCCGGAAGGGGATATCGGCTGGGTTCTGTGTCGGCTTCCC
TTGCCGCTGCCGCTGCTGCTGCTGCTGTTGCTGCCGGCTGCGGTCCCGTT
TCTTCTCCTCTGGTCTCCGCTGACATCGCTGCCGTCGCGGGCGCCACGGC
CTCGGCTCTGCTGCGTCCATTCGGATGTCGCCGTGGTGGTAGCAGAAGAG
GTCCTCGCCGGGGACGTCTTCAATGATAACGCCGCCGGTGGTACTGGGTA
CCCTTCGGGGATGTACGCGGCGTCATGA
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