mRNA_L-elsbetiae_contig9874.18813.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9874.18813.1 vs. uniprot
Match: A0A6H5KH15_9PHAE (Arrestin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH15_9PHAE) HSP 1 Score: 408 bits (1049), Expect = 3.530e-135 Identity = 222/372 (59.68%), Postives = 268/372 (72.04%), Query Frame = 1 Query: 1 INTAQKDTGTSASALVLRVVGLAKTLVMYKATGIVPTTSGAATYTHRDNSNEYIEFLGFDVQLASFGGKVAPGVQSFPFSVVLPSELPPSMKETGGGGSMAIAYGFSARLHRPGLLNFDSKGKAQLKVLSRPQETDATQPVLVGPDARPVKQCYCMQSGSMSIGFQADRSAVGRNEAVGVTVVARNDSSVAVKNLLIELVQETKYWARGSQDCSTRTLTSVEVPITELAQVEVGDNRGRSQSSSAIAGAARADLEQQLAVGAGAKREILVPGDTTITFRSETIEVRHLLTVRLETPSCVDSPDAWMPLRIQPGTQPGTSSTVPEV--KPSHFAPSSAEAATLVNVDPVVVPQNALRLEYSYELPENSGPARK 1110 +N KD G+ A +LV+R+VGLAKT M+ ATG+VPTTSGAA YT+RD +E +EFLG+DVQLA FGGK A G ++ FSV LP LP SMKE GG GS AIAYGF ARLHRPGLLNFD+KGK QLKVL +P+ET A+ PV+ GP + VK+CYC+QSGSMS+GFQADRS VG NE+VGV VVARNDSSVAVKNL +ELVQET + A G+ D STR + SV VP EL E G RG QS++AIA ARADLE+QLA GAG + E+ VP DT+IT SETI+VRH+LTVR++ P CV+ PD W L +QPGT S VP+V + S APSS V V P +A++L Y++E P SG K Sbjct: 26 LNVTAKDAGSPAGSLVIRLVGLAKTRAMFIATGVVPTTSGAAPYTYRDMLSEDVEFLGYDVQLADFGGKAASGEHTYDFSVTLPPSLPASMKEQGGNGSCAIAYGFRARLHRPGLLNFDAKGKVQLKVLGKPEETSASSPVVAGPAVKAVKKCYCLQSGSMSLGFQADRSVVGLNESVGVIVVARNDSSVAVKNLRVELVQETSWTANGAGDVSTRVVKSVVVPGAELGAAEFGGQRG--QSAAAIADTARADLERQLASGAGTRHELTVPADTSITLNSETIQVRHVLTVRIQGPRCVECPDVWTSLHVQPGT----SGVVPKVHEETSSLAPSSTARPVTVTVPP-----SAVKLAYNHEQPRTSGTVGK 386
BLAST of mRNA_L-elsbetiae_contig9874.18813.1 vs. uniprot
Match: D7FWP6_ECTSI (Arrestin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP6_ECTSI) HSP 1 Score: 353 bits (905), Expect = 1.710e-113 Identity = 210/401 (52.37%), Postives = 249/401 (62.09%), Query Frame = 1 Query: 1 INTAQKDTGTSASALVLRVVGLAKTLVMYKATGIVPTTSGAATYTHRDNSNEYIEFLGFDVQLASFGGKVAPGVQSFPFSVVLPSELPPSMKETGGGGSMAIAYGFSARLHRPGLLNFDSKGKAQLKVLSRPQETDATQPVLVGPDARPVKQCYCMQSGS-----------------------------MSIGFQADRSAVGRNEAVGVTVVARNDSSVAVKNLLIELVQETKYWARGSQDCSTRTLTSVEVPITELAQVEVGDNRGRSQSSSAIAGAARADLEQQLAVGAGAKREILVPGDTTITFRSETIEVRHLLTVRLETPSCVDSPDAWMPLRIQPGTQPGTSSTVPEV--KPSHFAPSSAEAATLVNVDPVVVPQNALRLEYSYELPENSGPARK 1110 +N KD G+ A +LV+R+VGLAKT M+ ATG+VPT SGAA YT+RD +E +EFLG+DVQLA FGG+ A G ++ FSV LP LP SMKE GGGGS AIAYGF ARLHRPGLLNFD+KGK QLKVL +PQET A+ PV+ GP+ VK+CYC+QSGS MS+GFQADRS VG NE+VG+TVVARNDSSVAVKNL IELVQET + A G+ D STR + SV VP EL VE G RGRS ++AIA ARADLE QLA GAG + E+ VP DT+IT SETI QPGTS VP+V + S APSS V V P +A++L Y++E P SG K Sbjct: 26 LNVTAKDAGSPAGSLVIRLVGLAKTRAMFTATGVVPTESGAAPYTYRDTLSEDVEFLGYDVQLADFGGRAASGEHTYDFSVTLPPSLPASMKEQGGGGSCAIAYGFRARLHRPGLLNFDAKGKVQLKVLGKPQETSASSPVVAGPEVMAVKKCYCLQSGSCVAESRSTMDLGHRHARWQHGAPTNSHESMSLGFQADRSVVGLNESVGITVVARNDSSVAVKNLRIELVQETSWTANGAGDVSTRAVKSVVVPGAELGAVEFGGQRGRS--AAAIADTARADLESQLASGAGTRYELTVPADTSITLNSETI-------------------------------QPGTSGVVPKVHEETSSLAPSSTARPVTVTVPP-----SAVKLAYNHEQPRTSGAVGK 388
BLAST of mRNA_L-elsbetiae_contig9874.18813.1 vs. uniprot
Match: D7FWP5_ECTSI (Arrestin_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP5_ECTSI) HSP 1 Score: 335 bits (860), Expect = 1.050e-106 Identity = 188/363 (51.79%), Postives = 241/363 (66.39%), Query Frame = 1 Query: 10 AQKDTGTSASALVLRVVGLAKTLVMYKATGIVPTTSGAATYTHRDNSNEYIEFLGFDVQLASFGGKVAPGVQSFPFSVVLPSELPPSMKETGG-GGSMAIAYGFSARLHRPGLLNFDSKGKAQLKVLSRPQETDATQPVLVGPDARPVKQCYCMQSGSMSIGFQADRSAVGRNEAVGVTVVARNDSSVAVKNLLIELVQETKYWARGSQDCSTRTLTSVEVPITELAQVEVGDNRGRSQSSSAIAGAARADLEQQLAVGAGAKREILVPGDTTITFRSETIEVRHLLTVRLETPSCVDSPDAWMPLRIQPGTQPGTSSTVPEVKPSHFAPSSAEAATLV-------NVDPVVVPQNALRLEYS 1074 A+ + G+SA LVLR+ G+AKT VMY T + S A +YTHR+ E EFL +DVQLA+FGGK A G SFPF V+LP LPPSM+E G GGS I YGF ARLHRPG+L+FD+KGKA+L VLS+P E A PVLVGP + VK+ C +SGSMSIGFQAD S VG NE VG+TVVARNDSS VK + +E+ Q + ++ARG ++ TRT+ +V VP T+L E G+ RGRS S+ IA ARADL++QL GAG ++LVPG++ +T +++ IEV+H L+V L+TP C+ SPD W PL + GT E F P S EA NV PV VPQ+A+ +EY+ Sbjct: 30 AKNEEGSSADELVLRLYGVAKTRVMYDTTNMAHNNSNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHSFPFQVMLPPGLPPSMEENGSQGGSCEIFYGFEARLHRPGMLHFDAKGKAKLTVLSKPHEAGAATPVLVGPATQTVKKFCCFKSGSMSIGFQADHSEVGLNETVGLTVVARNDSSAEVKTMHVEIKQVSTWFARGYKESKTRTVAAVVVPGTQLRASEKGNQRGRS--SAVIADTARADLQEQLGAGAGTHYDLLVPGNSLLTLQADLIEVKHTLSVMLKTPHCISSPDVWTPLLVHAGTTSAPDGVSGE---GLFVPHSGEAIPFATGLDDEGNVKPVSVPQSAVTMEYT 387
BLAST of mRNA_L-elsbetiae_contig9874.18813.1 vs. uniprot
Match: A0A7S4VBL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VBL5_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.090e-11 Identity = 49/173 (28.32%), Postives = 80/173 (46.24%), Query Frame = 1 Query: 169 LGFDVQLASFG-GKVAPGVQSFPFSVVLPSELPPSMKETGGGGSMAIAYGFSARLHRPG----LLNFDSKG-----KAQLKVLSRPQETDATQP-VLVGPDARPVKQCYCMQSGSMSIGFQADRSAVGRNEAVGVTVVARNDSSVAVKNLLIELVQETKYWARGSQDCSTRTL 654 L D LA+FG G + PG FPF LPS +PP+M+ET G + Y A L +PG L N +K +L ++ +PQ + + P+A+ + C C G+M++ + +R+ + + V RNDS+ + L + + A G Q +R + Sbjct: 49 LKLDTPLANFGHGSIKPGQYEFPFISTLPSNIPPTMRETAGKSHCEVRYSIGAHLVQPGGAGGLFNRITKSWLRTLPKELIIIGKPQLAGIIAGGIALPPEAQSINYCCCFNRGTMTLDAELERTILSPGDTTNVFFRCRNDSTTPAFGVQAHLRETITWRASGHQQTKSRLI 221 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9874.18813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9874.18813.1 >prot_L-elsbetiae_contig9874.18813.1 ID=prot_L-elsbetiae_contig9874.18813.1|Name=mRNA_L-elsbetiae_contig9874.18813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=346bp MYKATGIVPTTSGAATYTHRDNSNEYIEFLGFDVQLASFGGKVAPGVQSFback to top mRNA from alignment at L-elsbetiae_contig9874:619..3287+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9874.18813.1 ID=mRNA_L-elsbetiae_contig9874.18813.1|Name=mRNA_L-elsbetiae_contig9874.18813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2669bp|location=Sequence derived from alignment at L-elsbetiae_contig9874:619..3287+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9874:619..3287+ >mRNA_L-elsbetiae_contig9874.18813.1 ID=mRNA_L-elsbetiae_contig9874.18813.1|Name=mRNA_L-elsbetiae_contig9874.18813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2076bp|location=Sequence derived from alignment at L-elsbetiae_contig9874:619..3287+ (Laminarionema elsbetiae ELsaHSoW15)back to top |