mRNA_L-elsbetiae_contig986.18799.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig986.18799.1
Unique NamemRNA_L-elsbetiae_contig986.18799.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Match: A0A6H5L6M1_9PHAE (UBA domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M1_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.900e-55
Identity = 172/350 (49.14%), Postives = 194/350 (55.43%), Query Frame = 1
Query:  655 FGKRVEGCGRTGSAGSSGAEVAT-----LAAALRQTPTAFTSLLLRELVLRHGSAVCPP----------------------------------ALTLPLLHRGIFRFDQRERSSSHAARPLMSVPSDTVAPRPGPAAGVGSTMLVLQAQPQAVVGGARALGPTAVSFLRDALLPPPSPRTGDSTAKAPIVRRGTAEERRRRNEALRAAFPGKVWAVARVLLALCERAGEGRGRVIAELCSALH----RISAASAERGSAVAVDRREE------WALREWGELAVGLAAPRAVRAAGTDYGNWTFALDVVRALVDNGVMPALTQALVGM------VAASGAALVRPSEMLT 1539
             G+RVE  GRT S GS+GA  AT      AAA  Q  T   SLLL EL+LRH                                          L LP     I RF QRERSSS+AAR L  VP D VAPRPG AAGV   + +LQAQ  AV G A A  PT V+FL   LLP  SPR GD+ AK  +     AEERR+R +AL A    K  A AR+LLALC RAGEGR RV+AEL SAL     R +     RGS VA +RR++      WAL+ WGELA+GLAAPRAV A G DYGN T A DVVRA+ D G +PALT+AL  M        A GAALVRP EMLT
Sbjct: 1301 IGERVERDGRTDSGGSNGAGAATGGSGSFAAAPHQNRTTIMSLLLSELILRHEGVXXXXXXXXXXXXXXXXXXXXGTTEFLGVANLLELLSDLVLHLPACATSIHRFGQRERSSSYAARLLAPVPGDAVAPRPGSAAGVARALRLLQAQRHAVAGAA-APSPTVVAFLLHVLLP--SPRAGDTAAKGIV----DAEERRKR-KALSALQGRKAQAAARLLLALCARAGEGRRRVLAELYSALSCNADRGTGGGGGRGS-VANERRDQRTDREMWALQAWGELALGLAAPRAVHAVGNDYGNQTLAWDVVRAVTDIGAVPALTRALARMDLNHSRAPACGAALVRPLEMLT 1641          
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Match: A0A7S2K3E8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3E8_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.520e-8
Identity = 53/139 (38.13%), Postives = 78/139 (56.12%), Query Frame = 1
Query: 1186 ARVLLALCERAGEGRGRVIAELCSALHRISAASA---ERGSAVAVD------RREEWALREWGELAVGLAAPRAVRAAGTDYGNWTFALD------VVRALVDNGVMPALTQAL------VGMVAASGAALVRPSEMLT 1539
            AR+L+ LC RAGEGR RV+++L SAL   S+ ++   E+G + A+        RE WAL+ WGEL +GL+APR+        G  TF  D      VV+ +++ GV  AL + +      V M + +  AL+RP E+ T
Sbjct:  387 ARLLIILCARAGEGRRRVVSDLASALGGSSSPASDGKEKGKSKALQLSLSQSEREMWALQSWGELCIGLSAPRS--------GGITFDSDAALSWEVVKLMLEFGVAHALMEGIKRIDLNVPMASNAAGALLRPLEVFT 517          
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Match: A0A7S2QUL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QUL7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.740e-7
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 1186 ARVLLALCERAGEGRGRVIAELCSALHRISAASAERGSAVAVDRREEWALREWGELAVGLAAPRAV--RAAGTDYGNWTFALDVVRALVDNGVMPALTQAL 1482
            AR+++ALC R GEGR RVI E+C    +        G   AV  RE WAL  WGEL +GL +PR+   +A  +DY + T A ++VR + + G++  L  AL
Sbjct: 1147 ARLIIALCARPGEGRRRVIHEICCCFRKRQ--GGVEGGEQAV--RELWALTSWGELVLGLMSPRSGSGQAKESDYSSSTLAYEIVRLMGEVGLVGCLMDAL 1243          
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Match: A0A7S4MCB0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MCB0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.190e-6
Identity = 65/201 (32.34%), Postives = 93/201 (46.27%), Query Frame = 1
Query: 1024 TAVSFLRDALLPPP----SPRTGDSTAKAPIVRRGTAEERRRRNEALRAAFPGKVWAVARVLLALCERAGEGRGRVIAELCSALH-------------------RISAASAERGSAVAVDRREEWALREWGELAVGLAAPRAVRAAGTDYGNWTFALDVVRALVDNGVMPALTQALVGM------VAASGAALVRPSEMLT 1539
            TAVSFL   LLP P    +P      A A +   G+A +      A            AR+L+AL  RAGEGR RVIA+L  AL                       AA AE   +   +  E WAL+ WGEL +G+AAPR+   +     N + + +VV+ ++++G+  AL  A+  +       +   AAL+RP E+ T
Sbjct:  869 TAVSFLLHELLPRPRSPVAPARRGRGADAELPLGGSAVDAETEERATAYMKVKISQTAARLLVALVARAGEGRRRVIADLSFALGGGGFCGGVDVSSLMPQSPAAKRAADAEGSGSQRDEDHELWALQSWGELCIGIAAPRSTGISQDT--NASLSWEVVKLMLESGIAHALLAAVRRIRLHHPNASRCAAALIRPLEVFT 1067          
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Match: A0A7S2W403_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W403_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.330e-6
Identity = 48/130 (36.92%), Postives = 71/130 (54.62%), Query Frame = 1
Query: 1186 ARVLLALCERAGEGRGRVIAELCSALHRISAASAERGSAVAV------DRREEWALREWGELAVGLAAPRAVRAAGTDYGNWTFALDVVRALVDNGVMPALTQALVG------MVAASGAALVRPSEMLT 1539
            AR+L+AL  RAGEGR RVI++L  AL           S  +       D +E WAL+ WGEL +GLAAPR+  ++     N + + +VVR +++ G+  AL   +        + A + AAL+RP E+ T
Sbjct:   76 ARLLVALVARAGEGRRRVISDLALALSGGGQCHLNLDSCKSEILCNRDDDKEMWALQSWGELCIGLAAPRS--SSINQDNNSSLSFEVVRVMLECGMAHALMHGIKKVRLHHPLAATTAAALLRPLELFT 203          
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Match: A0A7S4S0Y2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S0Y2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.470e-5
Identity = 43/124 (34.68%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 1186 ARVLLALCERAGEGRGRVIAELCSALHRISAASAERGSAVAVDRREEWALREWGELAVGLAAPRAVRAAGTDYGNWTFALDVVRALVDNGVMPALTQALVG------MVAASGAALVRPSEMLT 1539
            AR+L+AL  RAGEGR RV+ +L  AL   ++ S+    +   + +E WAL  WGEL +GLAAPR+   +   + + ++  +VV+ +++ G+  AL Q +        M     +AL+RP E+ +
Sbjct:  673 ARLLVALVARAGEGRRRVVTDLACALSGGTSHSSPTVKSNENEEKEMWALLSWGELCIGLAAPRSSSISQDHHQSLSY--EVVKLMLECGMAHALMQGVQRVKLHHPMAPTVASALLRPLEVFS 794          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L6M1_9PHAE1.900e-5549.14UBA domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A7S2K3E8_9STRA5.520e-838.13Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2QUL7_9STRA6.740e-741.58Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A7S4MCB0_9STRA1.190e-632.34Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2W403_9STRA1.330e-636.92Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S4S0Y2_9STRA1.470e-534.68Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig986contigL-elsbetiae_contig986:4357..10691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons11
Model size1879
Cds size1878
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817046.1398108-CDS-L-elsbetiae_contig986:4356..44821622817046.1398108-CDS-L-elsbetiae_contig986:4356..4482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 4357..4482 +
1691684006.5393293-CDS-L-elsbetiae_contig986:4356..44821691684006.5393293-CDS-L-elsbetiae_contig986:4356..4482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 4357..4482 +
1622817046.1506395-CDS-L-elsbetiae_contig986:4704..48661622817046.1506395-CDS-L-elsbetiae_contig986:4704..4866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 4705..4866 +
1691684006.5514328-CDS-L-elsbetiae_contig986:4704..48661691684006.5514328-CDS-L-elsbetiae_contig986:4704..4866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 4705..4866 +
1622817046.1615949-CDS-L-elsbetiae_contig986:5136..53701622817046.1615949-CDS-L-elsbetiae_contig986:5136..5370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 5137..5370 +
1691684006.5606453-CDS-L-elsbetiae_contig986:5136..53701691684006.5606453-CDS-L-elsbetiae_contig986:5136..5370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 5137..5370 +
1622817046.1761992-CDS-L-elsbetiae_contig986:5928..61551622817046.1761992-CDS-L-elsbetiae_contig986:5928..6155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 5929..6155 +
1691684006.5718958-CDS-L-elsbetiae_contig986:5928..61551691684006.5718958-CDS-L-elsbetiae_contig986:5928..6155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 5929..6155 +
1622817046.1875558-CDS-L-elsbetiae_contig986:6647..67521622817046.1875558-CDS-L-elsbetiae_contig986:6647..6752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 6648..6752 +
1691684006.5813282-CDS-L-elsbetiae_contig986:6647..67521691684006.5813282-CDS-L-elsbetiae_contig986:6647..6752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 6648..6752 +
1622817046.1986778-CDS-L-elsbetiae_contig986:7321..75611622817046.1986778-CDS-L-elsbetiae_contig986:7321..7561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 7322..7561 +
1691684006.591848-CDS-L-elsbetiae_contig986:7321..75611691684006.591848-CDS-L-elsbetiae_contig986:7321..7561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 7322..7561 +
1622817046.210114-CDS-L-elsbetiae_contig986:8048..82731622817046.210114-CDS-L-elsbetiae_contig986:8048..8273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 8049..8273 +
1691684006.6056607-CDS-L-elsbetiae_contig986:8048..82731691684006.6056607-CDS-L-elsbetiae_contig986:8048..8273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 8049..8273 +
1622817046.2235856-CDS-L-elsbetiae_contig986:8885..89971622817046.2235856-CDS-L-elsbetiae_contig986:8885..8997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 8886..8997 +
1691684006.6161025-CDS-L-elsbetiae_contig986:8885..89971691684006.6161025-CDS-L-elsbetiae_contig986:8885..8997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 8886..8997 +
1622817046.233975-CDS-L-elsbetiae_contig986:9608..97181622817046.233975-CDS-L-elsbetiae_contig986:9608..9718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 9609..9718 +
1691684006.6250823-CDS-L-elsbetiae_contig986:9608..97181691684006.6250823-CDS-L-elsbetiae_contig986:9608..9718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 9609..9718 +
1622817046.244223-CDS-L-elsbetiae_contig986:9986..100651622817046.244223-CDS-L-elsbetiae_contig986:9986..10065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 9987..10065 +
1691684006.6352344-CDS-L-elsbetiae_contig986:9986..100651691684006.6352344-CDS-L-elsbetiae_contig986:9986..10065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 9987..10065 +
1622817046.2567816-CDS-L-elsbetiae_contig986:10433..106911622817046.2567816-CDS-L-elsbetiae_contig986:10433..10691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 10434..10691 +
1691684006.6459403-CDS-L-elsbetiae_contig986:10433..106911691684006.6459403-CDS-L-elsbetiae_contig986:10433..10691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig986 10434..10691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig986.18799.1prot_L-elsbetiae_contig986.18799.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig986 4357..10691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig986.18799.1

>prot_L-elsbetiae_contig986.18799.1 ID=prot_L-elsbetiae_contig986.18799.1|Name=mRNA_L-elsbetiae_contig986.18799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=626bp
MDGFQGAPLGEMEPDLGISEVGRPSLSRVHEQMDGLQRELDKREQRCIAE
SKATAAAIAAAMQQERGDDRDRHDRQLCETKETRTADVEALQEGLQASKV
RTWELEARVSGLEGQVSGLKAQVLALVAENDGLSRTMDSLAVPRRAEFAA
GRHGGGDDDTGVDAVRRRRLELMPSLPQLVLDAAGGNSPPTLRLHSLPMN
AHLPVLGGGQRATVVAAGFGKRVEGCGRTGSAGSSGAEVATLAAALRQTP
TAFTSLLLRELVLRHGSAVCPPALTLPLLHRGIFRFDQRERSSSHAARPL
MSVPSDTVAPRPGPAAGVGSTMLVLQAQPQAVVGGARALGPTAVSFLRDA
LLPPPSPRTGDSTAKAPIVRRGTAEERRRRNEALRAAFPGKVWAVARVLL
ALCERAGEGRGRVIAELCSALHRISAASAERGSAVAVDRREEWALREWGE
LAVGLAAPRAVRAAGTDYGNWTFALDVVRALVDNGVMPALTQALVGMVAA
SGAALVRPSEMLTGSGDSHGPLGSLSFGGTPLQDTSAYAQEDIKIIVQPG
SARNTADPAARRLQGVAAAVGGMVASVGGVTNEGRWTEDGQPPTSAEDRA
VMPMMAEAEQAIVASSPPSQEVGHHA
back to top

mRNA from alignment at L-elsbetiae_contig986:4357..10691+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig986.18799.1 ID=mRNA_L-elsbetiae_contig986.18799.1|Name=mRNA_L-elsbetiae_contig986.18799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6335bp|location=Sequence derived from alignment at L-elsbetiae_contig986:4357..10691+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGGGTTCCAGGGAGCGCCACTAGGCGAAATGGAGCCTGACCTGGG GATTTCAGAGGTGGGCAGGCCGTCGCTTTCTCGGGTGCACGAGCAGATGG ATGGCCTTCAGAGAGAGCTAGACAAGGTGTGTCGAGGGTAGATGCTACGC TGGCTGTGCGGGCACTCGTCGACGTTTTGCTTGGGGCTCTGCTTGTTCTG GCAGCTGTCGGGTGCCCTGCCTTCTTGACCGCAACATATGTATGCACAAG CTCTGCGCGCAAAAGCACCAGCAACAGGCAGACAGCCACGCTTACACCCC GCGTGTTGTTCTTCGCGTGCTCACCTGAACCACAACAAACGAACCCAGCG CGAGCAGAGATGCATCGCAGAAAGCAAGGCCACCGCCGCCGCTATTGCGG CCGCCATGCAGCAAGAGAGGGGCGACGACCGCGACAGGCACGACCGCCAG CTGTGCGAGACGAAGGAAACGCGGACAGCTGACGTTGAAGCACTGCAGGA AGGGCTGCAGGTGAGCAGACCATGCTTTGAAGAGTTACGCCTTTGTCGCA TGGAAAGCCGCCGCTGTATCTTGAGCGCTAGCCTCTACGGGGGTGCCCAG GGGGGCTCCTCCGCTTAGCTCACACAAAGATCGAGACCGATGCATGCGTT TTCGCCTGACCCCCGACAAACCAGAGAGTTTTTAAAACACGCTTCAACCC CCCCCCCCCACCCCTCTTCGCACTTCGTTGTCCGTTCATCTCAACGGGCT CACACTTTCATTTTATCGTGAATAACGCAGGCCAGCAAAGTACGCACCTG GGAGCTAGAAGCCCGTGTCTCGGGACTAGAAGGCCAGGTCTCGGGGCTAA AAGCCCAGGTCCTGGCTCTCGTCGCGGAGAACGACGGCCTCTCCCGCACC ATGGACAGCCTGGCTGTGCCTAGGAGGGCCGAGTTTGCGGCCGGGCGGCA CGGTGGTGGCGATGATGACACGGGCGTGGACGCGGTGCGGAGGAGAAGGC TGGAGCTCATGCCTGTGAGTGACGGGTGATTGAGTGTTTGGGTTTCAGTT TGAAACGGCAACTGAGGAAAAACTGCTGAAGAGGAAAACCCATGGATCCG GGCACCATGTTGTGACATCGCGTGTCTGGTCTGAGTGCGCCACGCCGATT GGGGGTCGCAAAAAGGTGGCACGAAATTGTTGTTGTTTCTCGCATAAGCT CTCTAATCCAAAAACATCCATGAAGTGCGCGTGGGGGAAGGGGAGTGGCG ATGCAGTTGTTTGTCGGAAGTGAAATATTTTTTGCCTGGTGTCGGGAGAG GGCGAATGGGGGTGGAGCTACAATATTTAGCTCTATAATTTTGCCCTTCG GCTCTTGTTCCGGGCGGCTTGTGCGTGTTTTTTGCTGAGTGGGGTTTGTC GATCCTCTGCAGCAGCGGCAGAGCAGCGGCAGCAGCGGCAGCAGCGGCAG CAACGGTCGTGCGTGGCGTGAAGAAACTCCGAAGCCTGACGCCTCCCGCA TTGTTTCCTTCTTTGTTTCCTTCTTGGTCTGTCCGCCTTCTCGATCGCGT GTGCGGCGCGTTCGCATCGCAGTCCCTGCCCCAGCTCGTCCTAGACGCAG CCGGAGGCAACTCCCCCCCGACGTTGCGCCTCCACTCTCTCCCCATGAAC GCGCACCTCCCCGTCCTCGGTGGTGGTCAGCGAGCGACGGTGGTTGCTGC CGGCTTCGGCAAGCGGGTGGAGGGATGCGGGAGGACGGGTTCTGCTGGGT CGAGCGGGGCCGAAGTGGCGACGTTAGCGGCCGCTCTTCGTCAGACCCCG TGAGTGCTGCGCAGATCTTGTGTTGTTGCGCTGTGTTTCTTTGGCGAAAA ACGGTCCATAAGTAGGTAGGCGGGGGGTATTGTCTGGTGGTGTAGTGTAG ATAGGACAAGACGTGGCCGCACGGCGGCAGAGCGTTTCGCGGGCACGAAC AAGTTCGTTTGCCCACTCAATCGCGTCTTGAGACACCCCGTCCGTGTTTA CGAGCTGTGCTGTGCCCCCAGACCCACGCTCCCAACCTCGAGGCGACCCT TTCAACGAGCAAGCCAATTATTTCTTGAGTCAGCAGCCTTCGCAGGCTTT ACTGGAAGAATTCATATGGGATAAAGTATGGAAACGGCCAATGGGGGGCC GGTTTGGGGTGAGGCCAGGGTTAGGATTTAGGGTTACGGAACCCCTGTCT ATAATTTCCTCGCGGAGGCGGTCCTCTTGAGTGTGTCCCAGTACTGAACC CTCCCACCTTCGACCCAACCCATTCCTCCCGCGTATCAAAGGACCGCTTT CACGAGCCTTCTTCTGCGGGAGCTGGTTCTCCGGCACGGTAGCGCGGTGT GCCCTCCGGCTCTCACCCTGCCCCTGCTCCACAGGGGGATTTTCAGGTGA GCGGAAGTGATGTGTACCTTAATTCCTGCCGTTTGCGCACGTGTGTGTGT GTGTGTTTTAGTTGGCATCCACTGCGCTAACCGGTTGACCAATGGAAACT GGAAACACGTCAGCCTTTAGCGGGAAAAAAACGTAACATGTGTGAGTGGG TGTTGTTTTTTGCTGAGTTGTGCAATGGGTTGACTGCTGGCTTGTTGACG CTCGTCGCCGAGAGATTCAGTACACCGCTACGGCGAGTGGCGTGCTCTGC TGCCTTGGTTTCTCCACGATCCGAAGCCTGGTCCCATGCTGTCTCTCTCC ACCACCGCTGCTGTAGAAGCTGATGCTCTGCCTCACCAATCAATCCACAC ATTTGCTGCCAAAAACTGAAAAACAACTCTTGAAATTATGCCTCAGAAAA CAGCCACCAGAAAAGCGCTTGACCCCCCCCCCCCCCCCCCCCCCCCCCCT TCACAGGTGCCCCCCAGAGGGGCGGTCGCCCCCCCNNNNNNNNNNATTTA GCCCAAAAAACAACCCCCCCAAAAAACCCCCCCCCCCCCCCCCCCCCCCC CCTGCTCATGTACAGGTTCGACCAGAGAGAGCGGTCGTCCTCCCATGCGG CGAGGCCACTGATGTCTGTGCCGAGCGACACCGTCGCCCCGAGGCCCGGT CCCGCCGCCGGGGTCGGCAGCACGATGCTGGTACTGCAGGCTCAGCCGCA GGCGGTGGTGGGGGGGGCGAGGGCGCTGGGCCCCACCGCAGTGTCCTTCT TGCGGGACGCACTGCTTCCGCCTCCTTCCCCTCGCACCGGCGACAGCACC GCCAAGTGAGGATGCATATTTGTGTGTGTGTTTACTTGTGTTGCTTATCG TTGTGGCTCGCCGGTCGATGGTTGTTGTTGTGGTGGTATGTATGTCCGCG CGTGTTGGCGTGTTTCTCTTTTTGGCTTGGCTGGGAGTGTCCAATCCTGG GTTATTCGAGAGAAGTAGCGAGAGGGCGAGAACGCGTTCGGATCGGTCTT CTCCGTTCTTGGCTGTCATTCCAGCGCCTGATTTCTACTCCCAAGTGCGT TTTGGCGCGTTTTGCGTGTTCGTCTCTCGCCTCCCCTTTGCTGTATTACC CTTGTCGGTGAACACGCGTACTTGTGGCCTTTCACCTCGTGTCAAATAGA GACCGCAAAGAAGTACACAGGGCAAAGGTTTTGATTTTCCGCAGCCGCAG CCACAGCCGCAGCCTCCACCGTGCACGAGCGCGTTCAAATACCTCTCACC CCAAACATGGCGCTTCTTTCTCGCTTCTCACCGCGTACGCAGGGCCCCCA TCGTACGCAGGGGCACCGCCGAGGAGAGGCGCAGGCGTAACGAGGCCCTC CGCGCCGCCTTCCCGGGCAAGGTGTGGGCCGTAGCTCGCGTCCTGCTGGC GCTGTGCGAGCGCGCTGGGGAGGGCCGCGGGCGCGTCATCGCCGAGCTGT GCTCCGCCCTGCACCGCATCTCCGCCGCCTCCGCCGAGAGGGGTTCCGCG GTTGCGGTAGATCGAAGGTGGGTGGGCGGGTGGGTTTTTCGCAGGAAGGG AATATGGTGATGAGGTGTCGGTCCCGCCCGTCTGTTGTCTGTTGTCGCTG ACGCCGAGAGAGGGGGGCGCCGCGGCTAGTTCCATGAGGACAGACGCGGT GGTGGTTACGCGGTCGGTGAGGGCATGGCCAAACGTCGAAATACCAAGGT AGTCGGGCGGCACCGTGACTGGAAGCACGTATGGGTTGTGCACACGGGGG AGGTGTATGTGGGTTGTGTTTGCCTGCTGCGTATCGGTAGGAACGAAGGG GTATGTGGGGACGTTGTTGACGGTGGAGGCGAGGGACTGTTGCAGATAGG CCAGCGTGGAATGACAAGCGGCGAGGATTAAATCCATGGTGTGTTGATGT GTATATATCCATGGTGTACCTAGAGGGATGATGGTTGCATGCCTCTTGAA CATTTTTTTGTATTTCCTTCTTTGTTCTTTGGTGGCTTGTTTGTCTTTGC GACGAATCGTACCGTCTTGTCCTCGCTTGTAGAGTCAAACGGCAAGCTAG CAAACAGACACGTGCGTGCCGTGCTTATCCGCCCGTCTTCCCTTTGCATG TGTTGTTTCGGCGGCCGTTGTACGGTCAGGGAGGAGTGGGCTCTGCGGGA GTGGGGGGAGCTCGCCGTGGGCCTCGCGGCTCCGCGGGCGGTGCGCGCTG CGGGTACCGACTACGGCAACTGGACCTTCGCGTTGGACGTTGTAAGTGTA GTGTTCGCGTCAACGACTACTTCGAAGTGTATTTTTTCACATCGCGAAGT GTGTTTTTTCACATCGCTTGGGCAAATGTCAATGTTTCCCCACTTTTCGT GCGGCATCGAGAGACGGACGCTTGAGCTGGATGAGCCGTGCGGGTGATCT CCCTGCGGAGACGCGCATGATAATAAAAGCCAATAGAGCTTCCGTGATAC GAATATTTCAAGGAACGATTCGAGGTGTTGCATGTTTATATCCCGTTTGC CTCTGTTCTGATTATCTGGAATGCCTTGTAAGGTTTATTCCCGCTGTCTA GTTAATCTCGTCCTGCTGCTGTGTTTGTTTTTCTAGTTTCCTGCTGCGGC TGTGCGTACCGCCTGGCGTAAAGTAACGTTAACAGTGTTTCGTTTTGTTG CTGGGGGTCTCTTTGGTGTAATCCTGACCACGTACCAAAGCTACTTTTAT TGTTCCTGCGTCACCCGTGTGGCGCGTGTTGCCTCAGCTGGGGGAGATGC TTTTTGATTCTCGGCTCCTCGTTTCTGCTCTTGACCCTGCTCTTGCTCCT TCGGTTGGTTGCGGATGAACGCATACGAACGCGACTGGATGTACCGTCAC AGGTGCGGGCCCTAGTCGACAACGGGGTGATGCCAGCCTTGACTCAGGCG CTGGTAGGCATGGTCGCGGCTAGCGGCGCGGCGCTCGTGCGACCTTCCGA GATGTTGACGGGGTATGTATTCGGTTGATCGTGTGTGATGGGGGCACGCT GCTGTGCCTCCCTCTCTTGCTCTCATCTGTCACAAGTTTCTTATTTTGTA GAAGCATTTTTGGTGTGGTGTTTACAATCGCTGTTCGTGAAAATGTGTAC CTAATTAAAACGTGTATGGAGTTGGAATTTTTGTCCCCATGGGTAAAAAC GTCTTCCTCTCGCACCGACCCTGCCCCGACCCCTCCCTCTCCTCTCGTCC CGTCCCCCTGCCGCCTGTGGGTGTCATCAGCTCGGGCGATTCGCACGGCC CGCTCGGCTCGCTCAGTTTTGGCGGAACCCCCCTGCAAGACACCAGCGCC TACGCTCAGGTGGGTCGAGGCGTTTTTTTTAGTTGATGCAGATAGTGTAA GGTTGAATGAACCCTGCTCATTTCGTTGCTGCTGTTGTCGGGGCCGGATC GATCAATCGAACTCTACCTATGAACACACTGGTGGTAAATACATGGTGCT TTTGGCGCGAGGGCATGTGCTGCTGCTTCCGCGTGCAGTGTTCTATTTAC CAGCCATGCCCAACAAGAATCACGGGTGGAACTGTCTAAAACAGGCGAGA GGCTCCCCTTCCGTTTTTATTCAACGCCCCCCTTTCGGTTCCAGATGCTG CTTTTTTCTTTCTCCCTCTGCATAATATATAGCTGAAGGAATCGAATCGC GCACCCTCTTCCCACCGGTGTTTCCAGGAGGATATCAAGATCATCGTCCA GCCAGGCAGCGCTCGGAATACGGCCGATCCTGCCGCCCGCCGCCTGCAGG GCGTGGCGGCGGCGGTCGGGGGCATGGTCGCGTCGGTCGGCGGCGTGACC AACGAGGGCCGGTGGACGGAAGATGGGCAGCCGCCCACGTCGGCGGAGGA TAGGGCGGTGATGCCCATGATGGCCGAAGCGGAGCAGGCGATAGTCGCCA GCTCGCCTCCTTCGCAGGAAGTCGGGCATCATGCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig986:4357..10691+

>mRNA_L-elsbetiae_contig986.18799.1 ID=mRNA_L-elsbetiae_contig986.18799.1|Name=mRNA_L-elsbetiae_contig986.18799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3756bp|location=Sequence derived from alignment at L-elsbetiae_contig986:4357..10691+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGGGTTCCAGGGAGCGCCACTAGGCGAAATGGAGCCTGACCTGGG
GATTTCAGAGGTGGGCAGGCCGTCGCTTTCTCGGGTGCACGAGCAGATGG
ATGGCCTTCAGAGAGAGCTAGACAAGATGGATGGGTTCCAGGGAGCGCCA
CTAGGCGAAATGGAGCCTGACCTGGGGATTTCAGAGGTGGGCAGGCCGTC
GCTTTCTCGGGTGCACGAGCAGATGGATGGCCTTCAGAGAGAGCTAGACA
AGCGCGAGCAGAGATGCATCGCAGAAAGCAAGGCCACCGCCGCCGCTATT
GCGGCCGCCATGCAGCAAGAGAGGGGCGACGACCGCGACAGGCACGACCG
CCAGCTGTGCGAGACGAAGGAAACGCGGACAGCTGACGTTGAAGCACTGC
AGGAAGGGCTGCAGCGCGAGCAGAGATGCATCGCAGAAAGCAAGGCCACC
GCCGCCGCTATTGCGGCCGCCATGCAGCAAGAGAGGGGCGACGACCGCGA
CAGGCACGACCGCCAGCTGTGCGAGACGAAGGAAACGCGGACAGCTGACG
TTGAAGCACTGCAGGAAGGGCTGCAGGCCAGCAAAGTACGCACCTGGGAG
CTAGAAGCCCGTGTCTCGGGACTAGAAGGCCAGGTCTCGGGGCTAAAAGC
CCAGGTCCTGGCTCTCGTCGCGGAGAACGACGGCCTCTCCCGCACCATGG
ACAGCCTGGCTGTGCCTAGGAGGGCCGAGTTTGCGGCCGGGCGGCACGGT
GGTGGCGATGATGACACGGGCGTGGACGCGGTGCGGAGGAGAAGGCTGGA
GCTCATGCCTGCCAGCAAAGTACGCACCTGGGAGCTAGAAGCCCGTGTCT
CGGGACTAGAAGGCCAGGTCTCGGGGCTAAAAGCCCAGGTCCTGGCTCTC
GTCGCGGAGAACGACGGCCTCTCCCGCACCATGGACAGCCTGGCTGTGCC
TAGGAGGGCCGAGTTTGCGGCCGGGCGGCACGGTGGTGGCGATGATGACA
CGGGCGTGGACGCGGTGCGGAGGAGAAGGCTGGAGCTCATGCCTTCCCTG
CCCCAGCTCGTCCTAGACGCAGCCGGAGGCAACTCCCCCCCGACGTTGCG
CCTCCACTCTCTCCCCATGAACGCGCACCTCCCCGTCCTCGGTGGTGGTC
AGCGAGCGACGGTGGTTGCTGCCGGCTTCGGCAAGCGGGTGGAGGGATGC
GGGAGGACGGGTTCTGCTGGGTCGAGCGGGGCCGAAGTGGCGACGTTAGC
GGCCGCTCTTCGTCAGACCCCTCCCTGCCCCAGCTCGTCCTAGACGCAGC
CGGAGGCAACTCCCCCCCGACGTTGCGCCTCCACTCTCTCCCCATGAACG
CGCACCTCCCCGTCCTCGGTGGTGGTCAGCGAGCGACGGTGGTTGCTGCC
GGCTTCGGCAAGCGGGTGGAGGGATGCGGGAGGACGGGTTCTGCTGGGTC
GAGCGGGGCCGAAGTGGCGACGTTAGCGGCCGCTCTTCGTCAGACCCCGA
CCGCTTTCACGAGCCTTCTTCTGCGGGAGCTGGTTCTCCGGCACGGTAGC
GCGGTGTGCCCTCCGGCTCTCACCCTGCCCCTGCTCCACAGGGGGATTTT
CAGGACCGCTTTCACGAGCCTTCTTCTGCGGGAGCTGGTTCTCCGGCACG
GTAGCGCGGTGTGCCCTCCGGCTCTCACCCTGCCCCTGCTCCACAGGGGG
ATTTTCAGGTTCGACCAGAGAGAGCGGTCGTCCTCCCATGCGGCGAGGCC
ACTGATGTCTGTGCCGAGCGACACCGTCGCCCCGAGGCCCGGTCCCGCCG
CCGGGGTCGGCAGCACGATGCTGGTACTGCAGGCTCAGCCGCAGGCGGTG
GTGGGGGGGGCGAGGGCGCTGGGCCCCACCGCAGTGTCCTTCTTGCGGGA
CGCACTGCTTCCGCCTCCTTCCCCTCGCACCGGCGACAGCACCGCCAAGT
TCGACCAGAGAGAGCGGTCGTCCTCCCATGCGGCGAGGCCACTGATGTCT
GTGCCGAGCGACACCGTCGCCCCGAGGCCCGGTCCCGCCGCCGGGGTCGG
CAGCACGATGCTGGTACTGCAGGCTCAGCCGCAGGCGGTGGTGGGGGGGG
CGAGGGCGCTGGGCCCCACCGCAGTGTCCTTCTTGCGGGACGCACTGCTT
CCGCCTCCTTCCCCTCGCACCGGCGACAGCACCGCCAAGGCCCCCATCGT
ACGCAGGGGCACCGCCGAGGAGAGGCGCAGGCGTAACGAGGCCCTCCGCG
CCGCCTTCCCGGGCAAGGTGTGGGCCGTAGCTCGCGTCCTGCTGGCGCTG
TGCGAGCGCGCTGGGGAGGGCCGCGGGCGCGTCATCGCCGAGCTGTGCTC
CGCCCTGCACCGCATCTCCGCCGCCTCCGCCGAGAGGGGTTCCGCGGTTG
CGGTAGATCGAAGGGCCCCCATCGTACGCAGGGGCACCGCCGAGGAGAGG
CGCAGGCGTAACGAGGCCCTCCGCGCCGCCTTCCCGGGCAAGGTGTGGGC
CGTAGCTCGCGTCCTGCTGGCGCTGTGCGAGCGCGCTGGGGAGGGCCGCG
GGCGCGTCATCGCCGAGCTGTGCTCCGCCCTGCACCGCATCTCCGCCGCC
TCCGCCGAGAGGGGTTCCGCGGTTGCGGTAGATCGAAGGGAGGAGTGGGC
TCTGCGGGAGTGGGGGGAGCTCGCCGTGGGCCTCGCGGCTCCGCGGGCGG
TGCGCGCTGCGGGTACCGACTACGGCAACTGGACCTTCGCGTTGGACGTT
GGAGGAGTGGGCTCTGCGGGAGTGGGGGGAGCTCGCCGTGGGCCTCGCGG
CTCCGCGGGCGGTGCGCGCTGCGGGTACCGACTACGGCAACTGGACCTTC
GCGTTGGACGTTGTGCGGGCCCTAGTCGACAACGGGGTGATGCCAGCCTT
GACTCAGGCGCTGGTAGGCATGGTCGCGGCTAGCGGCGCGGCGCTCGTGC
GACCTTCCGAGATGTTGACGGGGTGCGGGCCCTAGTCGACAACGGGGTGA
TGCCAGCCTTGACTCAGGCGCTGGTAGGCATGGTCGCGGCTAGCGGCGCG
GCGCTCGTGCGACCTTCCGAGATGTTGACGGGCTCGGGCGATTCGCACGG
CCCGCTCGGCTCGCTCAGTTTTGGCGGAACCCCCCTGCAAGACACCAGCG
CCTACGCTCAGCTCGGGCGATTCGCACGGCCCGCTCGGCTCGCTCAGTTT
TGGCGGAACCCCCCTGCAAGACACCAGCGCCTACGCTCAGGAGGATATCA
AGATCATCGTCCAGCCAGGCAGCGCTCGGAATACGGCCGATCCTGCCGCC
CGCCGCCTGCAGGGCGTGGCGGCGGCGGTCGGGGGCATGGTCGCGTCGGT
CGGCGGCGTGACCAACGAGGGCCGGTGGACGGAAGATGGGCAGCCGCCCA
CGTCGGCGGAGGATAGGGCGGTGATGCCCATGATGGCCGAAGCGGAGCAG
GCGATAGTCGCCAGCTCGCCTCCTTCGCAGGAAGTCGGGCATCATGCTGA
GGATATCAAGATCATCGTCCAGCCAGGCAGCGCTCGGAATACGGCCGATC
CTGCCGCCCGCCGCCTGCAGGGCGTGGCGGCGGCGGTCGGGGGCATGGTC
GCGTCGGTCGGCGGCGTGACCAACGAGGGCCGGTGGACGGAAGATGGGCA
GCCGCCCACGTCGGCGGAGGATAGGGCGGTGATGCCCATGATGGCCGAAG
CGGAGCAGGCGATAGTCGCCAGCTCGCCTCCTTCGCAGGAAGTCGGGCAT
CATGCT
back to top