mRNA_L-elsbetiae_contig986.18799.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Match: A0A6H5L6M1_9PHAE (UBA domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M1_9PHAE) HSP 1 Score: 214 bits (546), Expect = 1.900e-55 Identity = 172/350 (49.14%), Postives = 194/350 (55.43%), Query Frame = 1 Query: 655 FGKRVEGCGRTGSAGSSGAEVAT-----LAAALRQTPTAFTSLLLRELVLRHGSAVCPP----------------------------------ALTLPLLHRGIFRFDQRERSSSHAARPLMSVPSDTVAPRPGPAAGVGSTMLVLQAQPQAVVGGARALGPTAVSFLRDALLPPPSPRTGDSTAKAPIVRRGTAEERRRRNEALRAAFPGKVWAVARVLLALCERAGEGRGRVIAELCSALH----RISAASAERGSAVAVDRREE------WALREWGELAVGLAAPRAVRAAGTDYGNWTFALDVVRALVDNGVMPALTQALVGM------VAASGAALVRPSEMLT 1539 G+RVE GRT S GS+GA AT AAA Q T SLLL EL+LRH L LP I RF QRERSSS+AAR L VP D VAPRPG AAGV + +LQAQ AV G A A PT V+FL LLP SPR GD+ AK + AEERR+R +AL A K A AR+LLALC RAGEGR RV+AEL SAL R + RGS VA +RR++ WAL+ WGELA+GLAAPRAV A G DYGN T A DVVRA+ D G +PALT+AL M A GAALVRP EMLT Sbjct: 1301 IGERVERDGRTDSGGSNGAGAATGGSGSFAAAPHQNRTTIMSLLLSELILRHEGVXXXXXXXXXXXXXXXXXXXXGTTEFLGVANLLELLSDLVLHLPACATSIHRFGQRERSSSYAARLLAPVPGDAVAPRPGSAAGVARALRLLQAQRHAVAGAA-APSPTVVAFLLHVLLP--SPRAGDTAAKGIV----DAEERRKR-KALSALQGRKAQAAARLLLALCARAGEGRRRVLAELYSALSCNADRGTGGGGGRGS-VANERRDQRTDREMWALQAWGELALGLAAPRAVHAVGNDYGNQTLAWDVVRAVTDIGAVPALTRALARMDLNHSRAPACGAALVRPLEMLT 1641
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Match: A0A7S2K3E8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3E8_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 5.520e-8 Identity = 53/139 (38.13%), Postives = 78/139 (56.12%), Query Frame = 1 Query: 1186 ARVLLALCERAGEGRGRVIAELCSALHRISAASA---ERGSAVAVD------RREEWALREWGELAVGLAAPRAVRAAGTDYGNWTFALD------VVRALVDNGVMPALTQAL------VGMVAASGAALVRPSEMLT 1539 AR+L+ LC RAGEGR RV+++L SAL S+ ++ E+G + A+ RE WAL+ WGEL +GL+APR+ G TF D VV+ +++ GV AL + + V M + + AL+RP E+ T Sbjct: 387 ARLLIILCARAGEGRRRVVSDLASALGGSSSPASDGKEKGKSKALQLSLSQSEREMWALQSWGELCIGLSAPRS--------GGITFDSDAALSWEVVKLMLEFGVAHALMEGIKRIDLNVPMASNAAGALLRPLEVFT 517
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Match: A0A7S2QUL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QUL7_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 6.740e-7 Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 1 Query: 1186 ARVLLALCERAGEGRGRVIAELCSALHRISAASAERGSAVAVDRREEWALREWGELAVGLAAPRAV--RAAGTDYGNWTFALDVVRALVDNGVMPALTQAL 1482 AR+++ALC R GEGR RVI E+C + G AV RE WAL WGEL +GL +PR+ +A +DY + T A ++VR + + G++ L AL Sbjct: 1147 ARLIIALCARPGEGRRRVIHEICCCFRKRQ--GGVEGGEQAV--RELWALTSWGELVLGLMSPRSGSGQAKESDYSSSTLAYEIVRLMGEVGLVGCLMDAL 1243
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Match: A0A7S4MCB0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MCB0_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.190e-6 Identity = 65/201 (32.34%), Postives = 93/201 (46.27%), Query Frame = 1 Query: 1024 TAVSFLRDALLPPP----SPRTGDSTAKAPIVRRGTAEERRRRNEALRAAFPGKVWAVARVLLALCERAGEGRGRVIAELCSALH-------------------RISAASAERGSAVAVDRREEWALREWGELAVGLAAPRAVRAAGTDYGNWTFALDVVRALVDNGVMPALTQALVGM------VAASGAALVRPSEMLT 1539 TAVSFL LLP P +P A A + G+A + A AR+L+AL RAGEGR RVIA+L AL AA AE + + E WAL+ WGEL +G+AAPR+ + N + + +VV+ ++++G+ AL A+ + + AAL+RP E+ T Sbjct: 869 TAVSFLLHELLPRPRSPVAPARRGRGADAELPLGGSAVDAETEERATAYMKVKISQTAARLLVALVARAGEGRRRVIADLSFALGGGGFCGGVDVSSLMPQSPAAKRAADAEGSGSQRDEDHELWALQSWGELCIGIAAPRSTGISQDT--NASLSWEVVKLMLESGIAHALLAAVRRIRLHHPNASRCAAALIRPLEVFT 1067
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Match: A0A7S2W403_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W403_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.330e-6 Identity = 48/130 (36.92%), Postives = 71/130 (54.62%), Query Frame = 1 Query: 1186 ARVLLALCERAGEGRGRVIAELCSALHRISAASAERGSAVAV------DRREEWALREWGELAVGLAAPRAVRAAGTDYGNWTFALDVVRALVDNGVMPALTQALVG------MVAASGAALVRPSEMLT 1539 AR+L+AL RAGEGR RVI++L AL S + D +E WAL+ WGEL +GLAAPR+ ++ N + + +VVR +++ G+ AL + + A + AAL+RP E+ T Sbjct: 76 ARLLVALVARAGEGRRRVISDLALALSGGGQCHLNLDSCKSEILCNRDDDKEMWALQSWGELCIGLAAPRS--SSINQDNNSSLSFEVVRVMLECGMAHALMHGIKKVRLHHPLAATTAAALLRPLELFT 203
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Match: A0A7S4S0Y2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S0Y2_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.470e-5 Identity = 43/124 (34.68%), Postives = 71/124 (57.26%), Query Frame = 1 Query: 1186 ARVLLALCERAGEGRGRVIAELCSALHRISAASAERGSAVAVDRREEWALREWGELAVGLAAPRAVRAAGTDYGNWTFALDVVRALVDNGVMPALTQALVG------MVAASGAALVRPSEMLT 1539 AR+L+AL RAGEGR RV+ +L AL ++ S+ + + +E WAL WGEL +GLAAPR+ + + + ++ +VV+ +++ G+ AL Q + M +AL+RP E+ + Sbjct: 673 ARLLVALVARAGEGRRRVVTDLACALSGGTSHSSPTVKSNENEEKEMWALLSWGELCIGLAAPRSSSISQDHHQSLSY--EVVKLMLECGMAHALMQGVQRVKLHHPMAPTVASALLRPLEVFS 794 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig986.18799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig986.18799.1 >prot_L-elsbetiae_contig986.18799.1 ID=prot_L-elsbetiae_contig986.18799.1|Name=mRNA_L-elsbetiae_contig986.18799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=626bp MDGFQGAPLGEMEPDLGISEVGRPSLSRVHEQMDGLQRELDKREQRCIAEback to top mRNA from alignment at L-elsbetiae_contig986:4357..10691+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig986.18799.1 ID=mRNA_L-elsbetiae_contig986.18799.1|Name=mRNA_L-elsbetiae_contig986.18799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6335bp|location=Sequence derived from alignment at L-elsbetiae_contig986:4357..10691+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig986:4357..10691+ >mRNA_L-elsbetiae_contig986.18799.1 ID=mRNA_L-elsbetiae_contig986.18799.1|Name=mRNA_L-elsbetiae_contig986.18799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3756bp|location=Sequence derived from alignment at L-elsbetiae_contig986:4357..10691+ (Laminarionema elsbetiae ELsaHSoW15)back to top |