mRNA_L-elsbetiae_contig9853.18797.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9853.18797.1
Unique NamemRNA_L-elsbetiae_contig9853.18797.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9853.18797.1 vs. uniprot
Match: D8LQ35_ECTSI (Galactinol--sucrose galactosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ35_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 1.940e-53
Identity = 121/204 (59.31%), Postives = 130/204 (63.73%), Query Frame = 1 
Query:    1 DDRAWTVVAST-HDYKATWTF-MSKTKFGRHLCLHRFKLWWLKPSHGHSGLNIPPETALLLAELHPPPLPSPTNTRSTAXXXXXXXXXXXXHRPEYVVLLPVSDTRARASLHRAGDDNVVAGAAPDAGVSGTPSSSXXXXXSGAAPDHD-PSVLAVSADTGDVATLLPGRLDVLLVATGPDPFRLVRRLVQEATDRLRAQLLSL 603
            DD  W V AST +   ATWTF +    FGRHLCLHRFKLWWLKPSHGHSGL+IPPETAL LAE+ P                      XXX    YV LLPVSDT ARASLHRAGDD+               S+      SGAA D D PS LAVSADTGD ATLLP  L VLLVATGPDPFRLV+RLV+EATDRL  QL+SL
Sbjct:   25 DDHCWIVEASTCNSDAATWTFGIQPGNFGRHLCLHRFKLWWLKPSHGHSGLDIPPETALFLAEMQP---------------------QXXXXXXXYVALLPVSDTHARASLHRAGDDS---------------SNGEGLSPSGAAVDEDSPSALAVSADTGDPATLLPDTLGVLLVATGPDPFRLVQRLVREATDRLSTQLVSL 192
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BLAST of mRNA_L-elsbetiae_contig9853.18797.1 vs. uniprot
Match: A0A835YGP5_9STRA (Galactinol--sucrose galactosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGP5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.590e-6
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   94 LHRFKLWWLKPSHGHSGLNIPPETALLLAELHPPP 198
            LH+FKLWW+KP+HG  G ++PPET LLL+E+ P P
Sbjct:  186 LHKFKLWWMKPTHGRRGSDVPPETQLLLSEMPPDP 220
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9853.18797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ35_ECTSI1.940e-5359.31Galactinol--sucrose galactosyltransferase n=2 Tax=... [more]
A0A835YGP5_9STRA3.590e-662.86Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9853contigL-elsbetiae_contig9853:3959..5348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue5.1e-47
Seed eggNOG ortholog2880.D8LQ35
Preferred nameAGA1
KEGG rclassRC00049,RC00059
KEGG koko:K06617
KEGG ReactionR02411
KEGG Pathwayko00052,map00052
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004557,GO:0005575,GO:0005911,GO:0005975,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009506,GO:0009628,GO:0015925,GO:0016052,GO:0016787,GO:0016798,GO:0030054,GO:0033530,GO:0034484,GO:0044238,GO:0050896,GO:0052692,GO:0055044,GO:0071704,GO:0080167,GO:1901575
EggNOG free text desc.galactinol-sucrose galactosyltransferase activity
EggNOG OGs2CC3R@1,2QPVE@2759
EC2.4.1.82
COG Functional cat.S
CAZyGH36
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionAlpha-galactosidase, family GH36
Ec32 orthologEc-26_006290.2
Exons2
Model size650
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817045.9430592-CDS-L-elsbetiae_contig9853:3960..45391622817045.9430592-CDS-L-elsbetiae_contig9853:3960..4539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9853 3961..4539 -
1691684006.3867722-CDS-L-elsbetiae_contig9853:3960..45391691684006.3867722-CDS-L-elsbetiae_contig9853:3960..4539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9853 3961..4539 -
1622817045.956509-CDS-L-elsbetiae_contig9853:5279..53481622817045.956509-CDS-L-elsbetiae_contig9853:5279..5348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9853 5280..5348 -
1691684006.4071424-CDS-L-elsbetiae_contig9853:5279..53481691684006.4071424-CDS-L-elsbetiae_contig9853:5279..5348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9853 5280..5348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9853.18797.1prot_L-elsbetiae_contig9853.18797.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9853 3961..5348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9853.18797.1

>prot_L-elsbetiae_contig9853.18797.1 ID=prot_L-elsbetiae_contig9853.18797.1|Name=mRNA_L-elsbetiae_contig9853.18797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=216bp
DDRAWTVVASTHDYKATWTFMSKTKFGRHLCLHRFKLWWLKPSHGHSGLN
IPPETALLLAELHPPPLPSPTNTRSTAAAVAAPPPRQQQHRPEYVVLLPV
SDTRARASLHRAGDDNVVAGAAPDAGVSGTPSSSPPPSSSGAAPDHDPSV
LAVSADTGDVATLLPGRLDVLLVATGPDPFRLVRRLVQEATDRLRAQLLS
LSLEEGRGPAAAAAAA
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mRNA from alignment at L-elsbetiae_contig9853:3959..5348-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9853.18797.1 ID=mRNA_L-elsbetiae_contig9853.18797.1|Name=mRNA_L-elsbetiae_contig9853.18797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1390bp|location=Sequence derived from alignment at L-elsbetiae_contig9853:3959..5348- (Laminarionema elsbetiae ELsaHSoW15)
GACGATCGTGCGTGGACTGTGGTCGCTTCCACGCACGACTACAAGGCAAC
TTGGACGTTCATGAGCAAGGTTAGCAAGTACCGTAGTTAGACTCGAGGGG
TGAATTGTGCATCGGCCCCTAGCTTAGTGTAGTCTACGCGCCATGTTTTT
TATACCGTTCTTGTCGTTCTCCTGCGTACTGCGTACAACATGGCTTATGC
TTCGATGATGTTGAGAGCGCCCTACATATGTATGTATCTAGATACATCCA
GAGCGTCTTGCAGCAGGGTCTGTACTTGGGTGTTACAGTAGAGTAGTCTA
CTTGTAACAAGTCTTGATTTGCGCGGACGAAACGAACCGAAGAAACCGCT
GGCTCTTGTAAACAATATAGTCTGAGGGTGTTCGCTGCTGTGTGCTCATA
TTCTTACTCTTGGCAGTTTAACCGTTTGCAACATCATGTGCAAAGGCTGT
TGAAGTTACGACGGACAGGTTACGACAGACAGCGTAGTTCCTCTCAAAAA
TGTCTTGTTCGGAATATACGTACATCGCACACCGAGTGGTACCAACTGCC
GATCTACAGCAGAAGTGGAACTTCCTTTTTACCGTCTGAACATTTGGATC
ATCAACCTTGCACGCGGCAGGACTGCTGCTGTCATCAAGGGTGAAACAGC
AACAGCAGAAGTGTGTTGCCTGAACTTCTGACGAGCGACGTGTGACGACT
TAGATACTTACTAGATACGATTGACGTGTGTTTTTTCAACTCTTCCGCAC
ACTGCTCTCCCACATCCATCCTTCAAAAACTGGTGTCTGGTAACGCATCC
CTCCCCCAGACGAAGTTCGGACGCCATCTTTGCCTGCATCGCTTCAAGCT
GTGGTGGCTCAAGCCCTCGCACGGCCACTCCGGTCTCAACATCCCCCCGG
AGACGGCCCTGCTTCTCGCCGAGCTTCACCCGCCGCCGCTTCCCAGCCCA
ACGAACACTCGTAGCACAGCAGCAGCAGTAGCGGCCCCGCCTCCGCGACA
ACAGCAGCATCGGCCGGAGTACGTGGTCCTGCTCCCCGTCAGCGACACCC
GCGCGCGCGCAAGCCTACACCGCGCAGGGGACGACAACGTCGTAGCAGGT
GCGGCACCGGACGCCGGGGTGTCCGGCACGCCATCATCATCACCGCCGCC
GTCATCGTCGGGCGCCGCACCGGACCACGACCCGTCGGTTCTGGCCGTTT
CTGCGGACACGGGAGACGTCGCCACGCTCCTGCCGGGCAGGCTGGATGTG
CTGCTAGTGGCGACAGGGCCGGACCCTTTCCGGCTCGTGCGAAGGCTCGT
GCAAGAGGCCACCGACCGGCTGAGGGCGCAGTTGCTCTCGCTCTCGCTCG
AGGAAGGGAGAGGGCCCGCTGCTGCTGCTGCTGCCGCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9853:3959..5348-

>mRNA_L-elsbetiae_contig9853.18797.1 ID=mRNA_L-elsbetiae_contig9853.18797.1|Name=mRNA_L-elsbetiae_contig9853.18797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig9853:3959..5348- (Laminarionema elsbetiae ELsaHSoW15)
GACGATCGTGCGTGGACTGTGGTCGCTTCCACGCACGACTACAAGGCAAC
TTGGACGTTCATGAGCAAGGACGATCGTGCGTGGACTGTGGTCGCTTCCA
CGCACGACTACAAGGCAACTTGGACGTTCATGAGCAAGACGAAGTTCGGA
CGCCATCTTTGCCTGCATCGCTTCAAGCTGTGGTGGCTCAAGCCCTCGCA
CGGCCACTCCGGTCTCAACATCCCCCCGGAGACGGCCCTGCTTCTCGCCG
AGCTTCACCCGCCGCCGCTTCCCAGCCCAACGAACACTCGTAGCACAGCA
GCAGCAGTAGCGGCCCCGCCTCCGCGACAACAGCAGCATCGGCCGGAGTA
CGTGGTCCTGCTCCCCGTCAGCGACACCCGCGCGCGCGCAAGCCTACACC
GCGCAGGGGACGACAACGTCGTAGCAGGTGCGGCACCGGACGCCGGGGTG
TCCGGCACGCCATCATCATCACCGCCGCCGTCATCGTCGGGCGCCGCACC
GGACCACGACCCGTCGGTTCTGGCCGTTTCTGCGGACACGGGAGACGTCG
CCACGCTCCTGCCGGGCAGGCTGGATGTGCTGCTAGTGGCGACAGGGCCG
GACCCTTTCCGGCTCGTGCGAAGGCTCGTGCAAGAGGCCACCGACCGGCT
GAGGGCGCAGTTGCTCTCGCTCTCGCTCGAGGAAGGGAGAGGGCCCGCTG
CTGCTGCTGCTGCCGCCACGAAGTTCGGACGCCATCTTTGCCTGCATCGC
TTCAAGCTGTGGTGGCTCAAGCCCTCGCACGGCCACTCCGGTCTCAACAT
CCCCCCGGAGACGGCCCTGCTTCTCGCCGAGCTTCACCCGCCGCCGCTTC
CCAGCCCAACGAACACTCGTAGCACAGCAGCAGCAGTAGCGGCCCCGCCT
CCGCGACAACAGCAGCATCGGCCGGAGTACGTGGTCCTGCTCCCCGTCAG
CGACACCCGCGCGCGCGCAAGCCTACACCGCGCAGGGGACGACAACGTCG
TAGCAGGTGCGGCACCGGACGCCGGGGTGTCCGGCACGCCATCATCATCA
CCGCCGCCGTCATCGTCGGGCGCCGCACCGGACCACGACCCGTCGGTTCT
GGCCGTTTCTGCGGACACGGGAGACGTCGCCACGCTCCTGCCGGGCAGGC
TGGATGTGCTGCTAGTGGCGACAGGGCCGGACCCTTTCCGGCTCGTGCGA
AGGCTCGTGCAAGAGGCCACCGACCGGCTGAGGGCGCAGTTGCTCTCGCT
CTCGCTCGAGGAAGGGAGAGGGCCCGCTGCTGCTGCTGCTGCCGCC
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