mRNA_L-elsbetiae_contig9836.18783.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9836.18783.1
Unique NamemRNA_L-elsbetiae_contig9836.18783.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9836.18783.1 vs. uniprot
Match: D7FY04_ECTSI (Putative regulatory protein cII n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY04_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 1.180e-116
Identity = 167/226 (73.89%), Postives = 191/226 (84.51%), Query Frame = 1
Query:    7 GALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRIESALHKISEKINGMPALKGMAGTPGQPDTQPSILAKVPDFNQFAALSHYYGLPVIALGPHLMGRWDAQTGVM 684
            G LFLLPGHEG+VDY+QKVTVAYGTNL+VEA APGAWNKLMALTAR CGADIVLVDC+PHRGKLNMHIILTSDYLF+PC PDTY HNAIKALP IM D + TR +ARN A+H  LA DVQIP  NPRILG+SV RYT ++S+PA+NF +WM RIES L +IS+ ++ +  L GMAGTPGQPDT PSILAKVP+FNQF+ALSH+YGLPVIALG +LM  WD +   M
Sbjct:  154 GGLFLLPGHEGLVDYEQKVTVAYGTNLLVEAIAPGAWNKLMALTARSCGADIVLVDCNPHRGKLNMHIILTSDYLFLPCTPDTYCHNAIKALPFIMADWVTTRFNARNTASHAGLARDVQIPKDNPRILGISVNRYTHIRSKPAKNFRYWMTRIESQLREISQDMHKIQGLAGMAGTPGQPDTWPSILAKVPEFNQFSALSHFYGLPVIALGANLMSVWDEEHAAM 379          
BLAST of mRNA_L-elsbetiae_contig9836.18783.1 vs. uniprot
Match: D7FY09_ECTSI (Putative regulatory protein cII n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY09_ECTSI)

HSP 1 Score: 347 bits (891), Expect = 1.670e-111
Identity = 164/222 (73.87%), Postives = 191/222 (86.04%), Query Frame = 1
Query:    7 GALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRIESALHKISEKINGMPALKGMAGTPGQPDTQPSILAKVPDFNQFAALSHYYGLPVIALGPHLMGRWDAQ 672
            G LFLLPGHEG+VDY+QKVTVAYGTNL+VEA APGAWNKLMALTAR CGADIVLVDC+PHRGKLNMHIILTSDYLF+PC P+TY HNAIKALP IM D + TR +ARN A+H  LA DVQIP  NPRILG+SV RYT ++S+PA+NF +WM RIE+ L +IS+ ++ +  L GMAGTPGQPDT PSILAKVP+FNQF+ALSH+YGLPVIALG +LMG W+ +
Sbjct:  475 GGLFLLPGHEGLVDYEQKVTVAYGTNLLVEAIAPGAWNKLMALTARSCGADIVLVDCNPHRGKLNMHIILTSDYLFLPCTPETYCHNAIKALPFIMADWVTTRFNARNTASHAGLARDVQIPKDNPRILGISVNRYTHIRSKPAKNFRYWMTRIENQLREISQDMHKIQGLAGMAGTPGQPDTWPSILAKVPEFNQFSALSHFYGLPVIALGANLMGVWNEE 696          
BLAST of mRNA_L-elsbetiae_contig9836.18783.1 vs. uniprot
Match: UPI00156D48D6 (AAA family ATPase n=1 Tax=Dorea formicigenerans TaxID=39486 RepID=UPI00156D48D6)

HSP 1 Score: 97.4 bits (241), Expect = 2.700e-20
Identity = 70/217 (32.26%), Postives = 100/217 (46.08%), Query Frame = 1
Query:   13 LFLLPGHEGIVDYDQKVTVAY----GTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRI----ESALHKISEKINGMPALKGMAGTPGQPDTQPSILAKVPDFNQFAALSHYYGLPVIAL 639
            LFLLPGH    ++D    +A       NLM     PGA+ K++ LTA++   DIVLVD SP     N +I++ SDY  VPCAPD + + AI +L  I     IT    ++N      +A  ++    P  LG+   RY      P + FA W+  I    +S L  +  + N +P   G          +   L  + DFN   A S  + +PV  L
Sbjct:   97 LFLLPGHVQFAEFDTTYNIAETMTGSLNLMKNV--PGAFRKMLELTAKEYKIDIVLVDMSPSISATNSNILMQSDYFIVPCAPDYFCYMAINSLLTIFPKWEITYKKMQDNDVFQ--SATYKMKNTPPIFLGILHQRYRPRNGSPVKAFAEWINDINDLVDSKLVPVLREHNMLPKQLGSNNY-----EESYNLCNIADFNSLIAQSQEHNVPVFLL 304          
BLAST of mRNA_L-elsbetiae_contig9836.18783.1 vs. uniprot
Match: A0A6N7HJG8_9PSEU (AAA family ATPase n=1 Tax=Actinophytocola sp. TaxID=1872138 RepID=A0A6N7HJG8_9PSEU)

HSP 1 Score: 64.7 bits (156), Expect = 1.230e-8
Identity = 55/223 (24.66%), Postives = 98/223 (43.95%), Query Frame = 1
Query:    1 GDGALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAA---PGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRIE-----SALHKISEKINGMPALKGMAGTPGQPDTQPSILAKVPDFNQFAALSHYYGLPVIALGP 645
            GD  L LL G   +  ++  ++ A+   L  +  A     A+ +++   A    AD+VLVD  P  G +N  +++ SD++ +P APD +S   ++ L   +      R        H     D+ +PAG+  ++G  VM +     +P + +  W+  I      S L + +E++   PA          P+T P  LA++  +     L+     P+ AL P
Sbjct:   92 GDDRLVLLAGDLELSSFEDDLSGAWPECLDGKPRAFRVMSAFWRVLNDAASSHEADVVLVDVGPSLGAINRGVLVASDHVVLPVAPDLFSLQGLRNLGPTLAG---WRSGWAERRKHGP--PDLAVPAGDMAVVGYVVMGHAVRLDRPVKAYQRWLAEIPGEFRGSVLRQATEQV---PA----------PETDPYCLAQLKHYRSLMPLAQEARKPMFALKP 296          
BLAST of mRNA_L-elsbetiae_contig9836.18783.1 vs. uniprot
Match: UPI0005850885 (ParA family protein n=1 Tax=Pseudoxanthomonas sp. GW2 TaxID=1211114 RepID=UPI0005850885)

HSP 1 Score: 53.5 bits (127), Expect = 8.150e-5
Identity = 46/166 (27.71%), Postives = 74/166 (44.58%), Query Frame = 1
Query:  151 GADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSA-RNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARN-FAFWMGRIESALHKISEKINGMPALKGMAGTPGQPDTQPSILAKVPDFNQFAALSHYYGLPVIALG 642
            G D +L D  P  G +   +IL+ D +F+P APD +SH AI  + AIM +  +TRH A  +      L+A +  P       G  V  Y   ++   +N +  W   I+ A+      IN +   KG+     +   +P I A + D    A ++   G  +  +G
Sbjct:  149 GFDYILCDVGPSAGSITRMVILSCDGIFIPTAPDRFSHQAILGMGAIMTE-WLTRHRAILSTFAPFGLSASLVEPV----FYGAVVNNYKIQRAGRKKNSYLKWESLIKEAI------INNLLDGKGLKPVAPEVKIEPFI-ASIRDVGPMAPVAQMVGKAIFDIG 302          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9836.18783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FY04_ECTSI1.180e-11673.89Putative regulatory protein cII n=2 Tax=Ectocarpus... [more]
D7FY09_ECTSI1.670e-11173.87Putative regulatory protein cII n=1 Tax=Ectocarpus... [more]
UPI00156D48D62.700e-2032.26AAA family ATPase n=1 Tax=Dorea formicigenerans Ta... [more]
A0A6N7HJG8_9PSEU1.230e-824.66AAA family ATPase n=1 Tax=Actinophytocola sp. TaxI... [more]
UPI00058508858.150e-527.71ParA family protein n=1 Tax=Pseudoxanthomonas sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9836contigL-elsbetiae_contig9836:1283..1969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue5.1e-28
Seed eggNOG ortholog2880.D7FY04
Hectar predicted targeting categoryother localisation
EggNOG free text desc.AAA domain
EggNOG OGs2CZ0S@1,2S7P2@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size687
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817044.6338742-CDS-L-elsbetiae_contig9836:1282..15641622817044.6338742-CDS-L-elsbetiae_contig9836:1282..1564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9836 1283..1564 -
1691684005.3405783-CDS-L-elsbetiae_contig9836:1282..15641691684005.3405783-CDS-L-elsbetiae_contig9836:1282..1564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9836 1283..1564 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817044.6462355-UTR-L-elsbetiae_contig9836:1564..19691622817044.6462355-UTR-L-elsbetiae_contig9836:1564..1969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9836 1565..1969 -
1691684005.3581161-UTR-L-elsbetiae_contig9836:1564..19691691684005.3581161-UTR-L-elsbetiae_contig9836:1564..1969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9836 1565..1969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9836.18783.1prot_L-elsbetiae_contig9836.18783.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9836 1283..1564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9836.18783.1

>prot_L-elsbetiae_contig9836.18783.1 ID=prot_L-elsbetiae_contig9836.18783.1|Name=mRNA_L-elsbetiae_contig9836.18783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MRYTQMKSQPARNFAFWMGRIESALHKISEKINGMPALKGMAGTPGQPDT
QPSILAKVPDFNQFAALSHYYGLPVIALGPHLMGRWDAQTGVMI
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mRNA from alignment at L-elsbetiae_contig9836:1283..1969-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9836.18783.1 ID=mRNA_L-elsbetiae_contig9836.18783.1|Name=mRNA_L-elsbetiae_contig9836.18783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=687bp|location=Sequence derived from alignment at L-elsbetiae_contig9836:1283..1969- (Laminarionema elsbetiae ELsaHSoW15)
GGTGATGGGGCGCTGTTCCTGCTCCCCGGGCACGAGGGAATTGTCGACTA CGATCAAAAGGTCACGGTCGCCTACGGCACTAACCTCATGGTCGAGGCGG CTGCCCCAGGCGCATGGAATAAGCTCATGGCGCTCACTGCCCGCAAGTGC GGGGCAGACATCGTCCTCGTCGACTGCAGCCCTCACAGGGGAAAGCTCAA CATGCACATCATCCTGACGTCCGACTACCTGTTCGTACCGTGCGCTCCGG ACACGTACAGCCACAACGCCATCAAGGCCCTCCCTGCCATCATGAAGGAC TAGATTATCACTCGGCACAGCGCCCGCAACAATGCTACTCACAATGAACT GGCCGCGGACGTGCAGATTCCGGCGGGTAACCCTCGGATTTTGGGGGTTT CGGTGATGAGGTACACCCAGATGAAAAGCCAACCAGCGAGGAACTTCGCG TTCTGGATGGGAAGGATCGAGAGCGCTCTTCATAAAATCAGCGAGAAAAT AAATGGCATGCCGGCCCTGAAGGGTATGGCGGGCACGCCTGGGCAACCAG ACACACAGCCGTCGATCCTCGCGAAGGTGCCCGACTTCAACCAATTCGCC GCTTTGAGCCACTACTACGGTCTTCCGGTCATCGCCTTGGGTCCGCATCT GATGGGCCGCTGGGACGCGCAGACGGGAGTGATGATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9836:1283..1969-

>mRNA_L-elsbetiae_contig9836.18783.1 ID=mRNA_L-elsbetiae_contig9836.18783.1|Name=mRNA_L-elsbetiae_contig9836.18783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig9836:1283..1969- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGTACACCCAGATGAAAAGCCAACCAGCGAGGAACTTCGCGTTCTG
GATGGGAAGGATCGAGAGCGCTCTTCATAAAATCAGCGAGAAAATAAATG
GCATGCCGGCCCTGAAGGGTATGGCGGGCACGCCTGGGCAACCAGACACA
CAGCCGTCGATCCTCGCGAAGGTGCCCGACTTCAACCAATTCGCCGCTTT
GAGCCACTACTACGGTCTTCCGGTCATCGCCTTGGGTCCGCATCTGATGG
GCCGCTGGGACGCGCAGACGGGAGTGATGATCATGAGGTACACCCAGATG
AAAAGCCAACCAGCGAGGAACTTCGCGTTCTGGATGGGAAGGATCGAGAG
CGCTCTTCATAAAATCAGCGAGAAAATAAATGGCATGCCGGCCCTGAAGG
GTATGGCGGGCACGCCTGGGCAACCAGACACACAGCCGTCGATCCTCGCG
AAGGTGCCCGACTTCAACCAATTCGCCGCTTTGAGCCACTACTACGGTCT
TCCGGTCATCGCCTTGGGTCCGCATCTGATGGGCCGCTGGGACGCGCAGA
CGGGAGTGATGATC
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