mRNA_L-elsbetiae_contig9836.18783.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9836.18783.1 vs. uniprot
Match: D7FY04_ECTSI (Putative regulatory protein cII n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY04_ECTSI) HSP 1 Score: 351 bits (901), Expect = 1.180e-116 Identity = 167/226 (73.89%), Postives = 191/226 (84.51%), Query Frame = 1 Query: 7 GALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRIESALHKISEKINGMPALKGMAGTPGQPDTQPSILAKVPDFNQFAALSHYYGLPVIALGPHLMGRWDAQTGVM 684 G LFLLPGHEG+VDY+QKVTVAYGTNL+VEA APGAWNKLMALTAR CGADIVLVDC+PHRGKLNMHIILTSDYLF+PC PDTY HNAIKALP IM D + TR +ARN A+H LA DVQIP NPRILG+SV RYT ++S+PA+NF +WM RIES L +IS+ ++ + L GMAGTPGQPDT PSILAKVP+FNQF+ALSH+YGLPVIALG +LM WD + M Sbjct: 154 GGLFLLPGHEGLVDYEQKVTVAYGTNLLVEAIAPGAWNKLMALTARSCGADIVLVDCNPHRGKLNMHIILTSDYLFLPCTPDTYCHNAIKALPFIMADWVTTRFNARNTASHAGLARDVQIPKDNPRILGISVNRYTHIRSKPAKNFRYWMTRIESQLREISQDMHKIQGLAGMAGTPGQPDTWPSILAKVPEFNQFSALSHFYGLPVIALGANLMSVWDEEHAAM 379
BLAST of mRNA_L-elsbetiae_contig9836.18783.1 vs. uniprot
Match: D7FY09_ECTSI (Putative regulatory protein cII n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY09_ECTSI) HSP 1 Score: 347 bits (891), Expect = 1.670e-111 Identity = 164/222 (73.87%), Postives = 191/222 (86.04%), Query Frame = 1 Query: 7 GALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRIESALHKISEKINGMPALKGMAGTPGQPDTQPSILAKVPDFNQFAALSHYYGLPVIALGPHLMGRWDAQ 672 G LFLLPGHEG+VDY+QKVTVAYGTNL+VEA APGAWNKLMALTAR CGADIVLVDC+PHRGKLNMHIILTSDYLF+PC P+TY HNAIKALP IM D + TR +ARN A+H LA DVQIP NPRILG+SV RYT ++S+PA+NF +WM RIE+ L +IS+ ++ + L GMAGTPGQPDT PSILAKVP+FNQF+ALSH+YGLPVIALG +LMG W+ + Sbjct: 475 GGLFLLPGHEGLVDYEQKVTVAYGTNLLVEAIAPGAWNKLMALTARSCGADIVLVDCNPHRGKLNMHIILTSDYLFLPCTPETYCHNAIKALPFIMADWVTTRFNARNTASHAGLARDVQIPKDNPRILGISVNRYTHIRSKPAKNFRYWMTRIENQLREISQDMHKIQGLAGMAGTPGQPDTWPSILAKVPEFNQFSALSHFYGLPVIALGANLMGVWNEE 696
BLAST of mRNA_L-elsbetiae_contig9836.18783.1 vs. uniprot
Match: UPI00156D48D6 (AAA family ATPase n=1 Tax=Dorea formicigenerans TaxID=39486 RepID=UPI00156D48D6) HSP 1 Score: 97.4 bits (241), Expect = 2.700e-20 Identity = 70/217 (32.26%), Postives = 100/217 (46.08%), Query Frame = 1 Query: 13 LFLLPGHEGIVDYDQKVTVAY----GTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRI----ESALHKISEKINGMPALKGMAGTPGQPDTQPSILAKVPDFNQFAALSHYYGLPVIAL 639 LFLLPGH ++D +A NLM PGA+ K++ LTA++ DIVLVD SP N +I++ SDY VPCAPD + + AI +L I IT ++N +A ++ P LG+ RY P + FA W+ I +S L + + N +P G + L + DFN A S + +PV L Sbjct: 97 LFLLPGHVQFAEFDTTYNIAETMTGSLNLMKNV--PGAFRKMLELTAKEYKIDIVLVDMSPSISATNSNILMQSDYFIVPCAPDYFCYMAINSLLTIFPKWEITYKKMQDNDVFQ--SATYKMKNTPPIFLGILHQRYRPRNGSPVKAFAEWINDINDLVDSKLVPVLREHNMLPKQLGSNNY-----EESYNLCNIADFNSLIAQSQEHNVPVFLL 304
BLAST of mRNA_L-elsbetiae_contig9836.18783.1 vs. uniprot
Match: A0A6N7HJG8_9PSEU (AAA family ATPase n=1 Tax=Actinophytocola sp. TaxID=1872138 RepID=A0A6N7HJG8_9PSEU) HSP 1 Score: 64.7 bits (156), Expect = 1.230e-8 Identity = 55/223 (24.66%), Postives = 98/223 (43.95%), Query Frame = 1 Query: 1 GDGALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAA---PGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRIE-----SALHKISEKINGMPALKGMAGTPGQPDTQPSILAKVPDFNQFAALSHYYGLPVIALGP 645 GD L LL G + ++ ++ A+ L + A A+ +++ A AD+VLVD P G +N +++ SD++ +P APD +S ++ L + R H D+ +PAG+ ++G VM + +P + + W+ I S L + +E++ PA P+T P LA++ + L+ P+ AL P Sbjct: 92 GDDRLVLLAGDLELSSFEDDLSGAWPECLDGKPRAFRVMSAFWRVLNDAASSHEADVVLVDVGPSLGAINRGVLVASDHVVLPVAPDLFSLQGLRNLGPTLAG---WRSGWAERRKHGP--PDLAVPAGDMAVVGYVVMGHAVRLDRPVKAYQRWLAEIPGEFRGSVLRQATEQV---PA----------PETDPYCLAQLKHYRSLMPLAQEARKPMFALKP 296
BLAST of mRNA_L-elsbetiae_contig9836.18783.1 vs. uniprot
Match: UPI0005850885 (ParA family protein n=1 Tax=Pseudoxanthomonas sp. GW2 TaxID=1211114 RepID=UPI0005850885) HSP 1 Score: 53.5 bits (127), Expect = 8.150e-5 Identity = 46/166 (27.71%), Postives = 74/166 (44.58%), Query Frame = 1 Query: 151 GADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSA-RNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARN-FAFWMGRIESALHKISEKINGMPALKGMAGTPGQPDTQPSILAKVPDFNQFAALSHYYGLPVIALG 642 G D +L D P G + +IL+ D +F+P APD +SH AI + AIM + +TRH A + L+A + P G V Y ++ +N + W I+ A+ IN + KG+ + +P I A + D A ++ G + +G Sbjct: 149 GFDYILCDVGPSAGSITRMVILSCDGIFIPTAPDRFSHQAILGMGAIMTE-WLTRHRAILSTFAPFGLSASLVEPV----FYGAVVNNYKIQRAGRKKNSYLKWESLIKEAI------INNLLDGKGLKPVAPEVKIEPFI-ASIRDVGPMAPVAQMVGKAIFDIG 302 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9836.18783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9836.18783.1 >prot_L-elsbetiae_contig9836.18783.1 ID=prot_L-elsbetiae_contig9836.18783.1|Name=mRNA_L-elsbetiae_contig9836.18783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp MRYTQMKSQPARNFAFWMGRIESALHKISEKINGMPALKGMAGTPGQPDTback to top mRNA from alignment at L-elsbetiae_contig9836:1283..1969- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9836.18783.1 ID=mRNA_L-elsbetiae_contig9836.18783.1|Name=mRNA_L-elsbetiae_contig9836.18783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=687bp|location=Sequence derived from alignment at L-elsbetiae_contig9836:1283..1969- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9836:1283..1969- >mRNA_L-elsbetiae_contig9836.18783.1 ID=mRNA_L-elsbetiae_contig9836.18783.1|Name=mRNA_L-elsbetiae_contig9836.18783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig9836:1283..1969- (Laminarionema elsbetiae ELsaHSoW15)back to top |