mRNA_L-elsbetiae_contig9831.18782.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9831.18782.1
Unique NamemRNA_L-elsbetiae_contig9831.18782.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9831.18782.1 vs. uniprot
Match: D8LQE4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE4_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.470e-20
Identity = 58/121 (47.93%), Postives = 70/121 (57.85%), Query Frame = 2 
Query:  131 AEADACPWQRHYDDSGTVFYYNEATEESEWDIPPGWEDHFANLESNAGPIADGGA-----DASALEDGHVSAAVEQEHATEXXXXXXXXXXXXXXXXQQEVDHAEGAEALLGLAQAAGGEQ 478
            A  + CPWQRH+DD+GTVFYYNE TEESEWD+PPGWE HFA L+  A   AD        D +   DG    A E E                    Q++VD AEGA+ALLGL+QA+ G+Q
Sbjct:    3 AAPEVCPWQRHWDDTGTVFYYNENTEESEWDVPPGWEAHFAGLDEKASGGADXXXXXXXXDDAGGRDGSAGKAYEAEDV--------------GGADQRQVDDAEGAQALLGLSQASSGDQ 109
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9831.18782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQE4_ECTSI1.470e-2047.93WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9831contigL-elsbetiae_contig9831:4136..5162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue4.3e-20
Seed eggNOG ortholog2880.D8LQE4
Preferred nameWAC
KEGG koko:K15181
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000323,GO:0000993,GO:0001098,GO:0001099,GO:0003008,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005764,GO:0005773,GO:0006325,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010390,GO:0010468,GO:0010506,GO:0010507,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016239,GO:0016241,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031570,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032446,GO:0032501,GO:0032991,GO:0033523,GO:0033554,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044783,GO:0044877,GO:0045786,GO:0045861,GO:0045893,GO:0045935,GO:0046958,GO:0046959,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0071894,GO:0080090,GO:1901564,GO:1901799,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1990904,GO:2000058,GO:2000059,GO:2000112,GO:2001141
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG5104@1,KOG0152@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size1027
Cds size900
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817044.572417-UTR-L-elsbetiae_contig9831:4135..42621622817044.572417-UTR-L-elsbetiae_contig9831:4135..4262Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9831 4136..4262 +
1691684005.3120034-UTR-L-elsbetiae_contig9831:4135..42621691684005.3120034-UTR-L-elsbetiae_contig9831:4135..4262Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9831 4136..4262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817044.5870194-CDS-L-elsbetiae_contig9831:4262..51621622817044.5870194-CDS-L-elsbetiae_contig9831:4262..5162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9831 4263..5162 +
1691684005.325079-CDS-L-elsbetiae_contig9831:4262..51621691684005.325079-CDS-L-elsbetiae_contig9831:4262..5162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9831 4263..5162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9831.18782.1prot_L-elsbetiae_contig9831.18782.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9831 4263..5162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9831.18782.1

>prot_L-elsbetiae_contig9831.18782.1 ID=prot_L-elsbetiae_contig9831.18782.1|Name=mRNA_L-elsbetiae_contig9831.18782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=300bp
MAEADACPWQRHYDDSGTVFYYNEATEESEWDIPPGWEDHFANLESNAGP
IADGGADASALEDGHVSAAVEQEHATEEREEEEEEEHGRREAEQQEVDHA
EGAEALLGLAQAAGGEQRHAEEDGTSPPQQQDSDQEHDDGVGGMAAPSSP
SPPLSPMDEDEQQVEEGVGTAQESRVRSSSEDIPVDASTAGNGEISRDGE
DRSNEGRVAEDVAAAPTDGAAAAGCPWIQSIDEESGNVFYYNETTEESSW
DEPPEYTKFHAAAAAAAAADAAAAAAAAASATPAAVHSDSEEEYYQQEHE
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mRNA from alignment at L-elsbetiae_contig9831:4136..5162+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9831.18782.1 ID=mRNA_L-elsbetiae_contig9831.18782.1|Name=mRNA_L-elsbetiae_contig9831.18782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1027bp|location=Sequence derived from alignment at L-elsbetiae_contig9831:4136..5162+ (Laminarionema elsbetiae ELsaHSoW15)
ATTCTGTGCTGTGTGCAGTGTTGCGCACGGCGTACTGCTGTTGCGCACGC
ACACGTAATCTTCTCTCTGCGTGTGTGTGTGTGTTTGATTTTTCTTGTGT
TTGTGCGTCTCTCCCTGCTGTGAAAAAATGGCGGAAGCAGATGCGTGTCC
CTGGCAACGGCACTACGACGACAGCGGCACCGTCTTCTACTACAACGAGG
CGACGGAGGAGTCCGAGTGGGACATTCCACCCGGATGGGAAGATCACTTC
GCCAATCTTGAAAGCAACGCTGGTCCTATCGCTGACGGTGGTGCGGATGC
CAGTGCCCTCGAAGATGGCCATGTCTCCGCTGCTGTGGAACAAGAACATG
CAACGGAGGAGCGAGAGGAGGAAGAAGAGGAGGAGCATGGGAGAAGAGAA
GCAGAGCAGCAGGAGGTGGACCATGCAGAGGGAGCTGAAGCACTGCTAGG
CCTAGCCCAGGCTGCTGGCGGAGAGCAGCGCCACGCGGAGGAAGACGGCA
CAAGCCCCCCGCAGCAGCAGGACAGTGATCAGGAGCACGATGATGGCGTG
GGAGGCATGGCTGCACCATCCTCGCCGTCGCCTCCTTTGTCTCCCATGGA
CGAGGATGAGCAGCAAGTAGAAGAAGGAGTGGGAACGGCACAAGAGTCCC
GGGTTAGATCATCGTCGGAAGATATCCCTGTCGATGCTTCTACGGCCGGT
AACGGCGAAATCAGCAGGGACGGAGAAGACCGTTCGAACGAAGGCAGGGT
AGCAGAAGACGTAGCAGCCGCTCCTACCGATGGTGCGGCTGCTGCTGGCT
GCCCTTGGATCCAGAGCATAGACGAAGAAAGCGGTAACGTATTCTACTAC
AACGAAACCACCGAGGAGTCCTCCTGGGACGAGCCGCCGGAGTACACGAA
ATTCCACGCGGCCGCCGCCGCCGCCGCCGCAGCCGACGCCGCAGCCGCAG
CCGCAGCCGCAGCCTCCGCCACCCCCGCTGCTGTCCACAGTGACTCGGAA
GAAGAATACTACCAGCAGGAGCACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9831:4136..5162+

>mRNA_L-elsbetiae_contig9831.18782.1 ID=mRNA_L-elsbetiae_contig9831.18782.1|Name=mRNA_L-elsbetiae_contig9831.18782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1800bp|location=Sequence derived from alignment at L-elsbetiae_contig9831:4136..5162+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGAAGCAGATGCGTGTCCCTGGCAACGGCACTACGACGACAGCGG
CACCGTCTTCTACTACAACGAGGCGACGGAGGAGTCCGAGTGGGACATTC
CACCCGGATGGGAAGATCACTTCGCCAATCTTGAAAGCAACGCTGGTCCT
ATCGCTGACGGTGGTGCGGATGCCAGTGCCCTCGAAGATGGCCATGTCTC
CGCTGCTGTGGAACAAGAACATGCAACGGAGGAGCGAGAGGAGGAAGAAG
AGGAGGAGCATGGGAGAAGAGAAGCAGAGCAGCAGGAGGTGGACCATGCA
GAGGGAGCTGAAGCACTGCTAGGCCTAGCCCAGGCTGCTGGCGGAGAGCA
GCGCCACGCGGAGGAAGACGGCACAAGCCCCCCGCAGCAGCAGGACAGTG
ATCAGGAGCACGATGATGGCGTGGGAGGCATGGCTGCACCATCCTCGCCG
TCGCCTCCTTTGTCTCCCATGGACGAGGATGAGCAGCAAGTAGAAGAAGG
AGTGGGAACGGCACAAGAGTCCCGGGTTAGATCATCGTCGGAAGATATCC
CTGTCGATGCTTCTACGGCCGGTAACGGCGAAATCAGCAGGGACGGAGAA
GACCGTTCGAACGAAGGCAGGGTAGCAGAAGACGTAGCAGCCGCTCCTAC
CGATGGTGCGGCTGCTGCTGGCTGCCCTTGGATCCAGAGCATAGACGAAG
AAAGCGGTAACGTATTCTACTACAACGAAACCACCGAGGAGTCCTCCTGG
GACGAGCCGCCGGAGTACACGAAATTCCACGCGGCCGCCGCCGCCGCCGC
CGCAGCCGACGCCGCAGCCGCAGCCGCAGCCGCAGCCTCCGCCACCCCCG
CTGCTGTCCACAGTGACTCGGAAGAAGAATACTACCAGCAGGAGCACGAG
ATGGCGGAAGCAGATGCGTGTCCCTGGCAACGGCACTACGACGACAGCGG
CACCGTCTTCTACTACAACGAGGCGACGGAGGAGTCCGAGTGGGACATTC
CACCCGGATGGGAAGATCACTTCGCCAATCTTGAAAGCAACGCTGGTCCT
ATCGCTGACGGTGGTGCGGATGCCAGTGCCCTCGAAGATGGCCATGTCTC
CGCTGCTGTGGAACAAGAACATGCAACGGAGGAGCGAGAGGAGGAAGAAG
AGGAGGAGCATGGGAGAAGAGAAGCAGAGCAGCAGGAGGTGGACCATGCA
GAGGGAGCTGAAGCACTGCTAGGCCTAGCCCAGGCTGCTGGCGGAGAGCA
GCGCCACGCGGAGGAAGACGGCACAAGCCCCCCGCAGCAGCAGGACAGTG
ATCAGGAGCACGATGATGGCGTGGGAGGCATGGCTGCACCATCCTCGCCG
TCGCCTCCTTTGTCTCCCATGGACGAGGATGAGCAGCAAGTAGAAGAAGG
AGTGGGAACGGCACAAGAGTCCCGGGTTAGATCATCGTCGGAAGATATCC
CTGTCGATGCTTCTACGGCCGGTAACGGCGAAATCAGCAGGGACGGAGAA
GACCGTTCGAACGAAGGCAGGGTAGCAGAAGACGTAGCAGCCGCTCCTAC
CGATGGTGCGGCTGCTGCTGGCTGCCCTTGGATCCAGAGCATAGACGAAG
AAAGCGGTAACGTATTCTACTACAACGAAACCACCGAGGAGTCCTCCTGG
GACGAGCCGCCGGAGTACACGAAATTCCACGCGGCCGCCGCCGCCGCCGC
CGCAGCCGACGCCGCAGCCGCAGCCGCAGCCGCAGCCTCCGCCACCCCCG
CTGCTGTCCACAGTGACTCGGAAGAAGAATACTACCAGCAGGAGCACGAG
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