prot_L-elsbetiae_contig9831.18782.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9831.18782.1
Unique Nameprot_L-elsbetiae_contig9831.18782.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length300
Homology
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BLAST of mRNA_L-elsbetiae_contig9831.18782.1 vs. uniprot
Match: D8LQE4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE4_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 6.060e-21
Identity = 58/121 (47.93%), Postives = 70/121 (57.85%), Query Frame = 0 
Query:    2 AEADACPWQRHYDDSGTVFYYNEATEESEWDIPPGWEDHFANLESNAGPIADGGA-----DASALEDGHVSAAVEQEHATEXXXXXXXXXXXXXXXXQQEVDHAEGAEALLGLAQAAGGEQ 117
            A  + CPWQRH+DD+GTVFYYNE TEESEWD+PPGWE HFA L+  A   AD        D +   DG    A E E                    Q++VD AEGA+ALLGL+QA+ G+Q
Sbjct:    3 AAPEVCPWQRHWDDTGTVFYYNENTEESEWDVPPGWEAHFAGLDEKASGGADXXXXXXXXDDAGGRDGSAGKAYEAEDV--------------GGADQRQVDDAEGAQALLGLSQASSGDQ 109
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9831.18782.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQE4_ECTSI6.060e-2147.93WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..95
NoneNo IPR availableGENE3D2.20.70.10coord: 2..47
e-value: 2.9E-10
score: 41.2
NoneNo IPR availableGENE3D2.20.70.10coord: 209..276
e-value: 3.1E-9
score: 38.2
NoneNo IPR availablePANTHERPTHR11864:SF0PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST)coord: 4..87
NoneNo IPR availablePANTHERPTHR11864:SF0PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST)coord: 128..284
IPR001202WW domainSMARTSM00456ww_5coord: 4..36
e-value: 0.0012
score: 28.1
coord: 222..255
e-value: 5.4E-4
score: 29.3
IPR001202WW domainPFAMPF00397WWcoord: 226..253
e-value: 4.1E-8
score: 33.2
IPR001202WW domainPROSITEPS01159WW_DOMAIN_1coord: 227..253
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 226..255
score: 10.6
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 8..36
score: 11.585
IPR039726Pre-mRNA-processing factor Prp40PANTHERPTHR11864PRE-MRNA-PROCESSING PROTEIN PRP40coord: 128..284
IPR039726Pre-mRNA-processing factor Prp40PANTHERPTHR11864PRE-MRNA-PROCESSING PROTEIN PRP40coord: 4..87
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 8..39
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 218..255

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9831contigL-elsbetiae_contig9831:4263..5162 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9831.18782.1mRNA_L-elsbetiae_contig9831.18782.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9831 4136..5162 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9831.18782.1 ID=prot_L-elsbetiae_contig9831.18782.1|Name=mRNA_L-elsbetiae_contig9831.18782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=300bp
MAEADACPWQRHYDDSGTVFYYNEATEESEWDIPPGWEDHFANLESNAGP
IADGGADASALEDGHVSAAVEQEHATEEREEEEEEEHGRREAEQQEVDHA
EGAEALLGLAQAAGGEQRHAEEDGTSPPQQQDSDQEHDDGVGGMAAPSSP
SPPLSPMDEDEQQVEEGVGTAQESRVRSSSEDIPVDASTAGNGEISRDGE
DRSNEGRVAEDVAAAPTDGAAAAGCPWIQSIDEESGNVFYYNETTEESSW
DEPPEYTKFHAAAAAAAAADAAAAAAAAASATPAAVHSDSEEEYYQQEHE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR039726Prp40-like
IPR036020WW_dom_sf