mRNA_L-elsbetiae_contig98.18749.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig98.18749.1 vs. uniprot
Match: A0A6H5KNY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY7_9PHAE) HSP 1 Score: 661 bits (1706), Expect = 3.960e-218 Identity = 426/820 (51.95%), Postives = 535/820 (65.24%), Query Frame = 1
Query: 1384 LRAQHGVLVEDSGRSHSDAAKRGSGGDEGLRERTLLTAACWQLRDNDDDRSPEAAEEAGQDGDAALEMAAVALAAGLTTSASPGLARKIQDALLEWEGQARPLEDKLIASASRIRWMYVLRLAVELGQCDQSQWEEVQQSLVVTPPRGGPVDLKGLYSTREDVHALLRASPGG-GPLLGGGVFPRLTESRGELTRLIERGQARLARLNALLRVLWEDESSGVTSVSPAKHRAGALNELVGVVIGESRLRPGVALRLFSALGSDAIRRARSGCEEVPPELARDVASLRLTPGGVVADEGAQRAAVAATELCAVLRIVGALAKGRNDESLRSPELVRRGAALQGELRGRIKNYSRPPDGRRRQAADVLGAAEDFVAELPPEPSEHGPGNSHLDLMVYLLGVVTSGRHQGPGDLFKSDATPDVLPGEDSVLLSSGETGPAQCDVSDVVRGDSANAEKEPQKSSADRSADGPEKRSGRQLGERGSLAEILAKIASAMPCDPDQTLASIWGAVKAS---LKISRPRGTEEAEAEVFELAIDAQVLEALNRSLHEAVEAPGRKGPSPALCDLPSAGTAQAPTPDAAERAAISWMPMEGHAPPSFGSVVHLGEENKTLQRQAEALRFKSTMNIVARTGLPLQDPVEAGRVTSVGALVAAATLAKRWKSAALNDGSGLGRPELERLNYLVDKRVENLSTQLTKLEKSNNDLARIMATPRVVAGEAVLSPESWAVREVQRLNGRIRVHRERLHSVETRLKGIRMG-KVALGDMETLWMTPDEREAMESNLRLISRKIAKANFLLRTMRSRWDVFREKHRHLALLVQDRL 3828
LRAQH VLVED RS S A G D+ LR+ +LLTAACWQLRDN S +A E G AALE+AA +AAGLT SAS L+R++ D L WEGQA PLE KL+ ASR+RWMY++RLAVELG CD ++WEE L+ P + P+DL+ L+ TR+ +HAL GG GPLL GGVFPR TESRGEL LIERG +RLAR N LLR +W ES+G T + R ALN LVGV++GES+L P AL+LFSALG D IRRA+S ++VP L ++A+L L+ GGV++ E +QRAA+A T+L A++RI L+K R++ SL +L +RGAALQ ELR ++K Y+ +RR+ +VL AAEDF+AE+PPE +EHGPGNS LD+M +LLG + +G TP SG+ AQ V D S ++ ++ S DR P K+ +L RG+L EI AKIASAMPCDPDQ +AS W ++AS ++ RPRG EE E E FELA+DAQ LE L SL A++ P R LCDLP + + P + I+ +P+ G V H +E K LQRQAEA+R+K+ MNIVARTGL LQ P EAG S+ A+VAAA AKRWKSAA +D SGLGRPELERLN ++D R+ +LS QL L +S + A E VLSP+ W RE QRLN RIR+ +E+LH +ETRL+ IR G K GD+E +WM+ DER ME+NL LISRKIAKANFLLR MRSRWD+FRE+HRHLA LV DRL
Sbjct: 2 LRAQHCVLVEDLQRSES--ADVGED-DDPLRQASLLTAACWQLRDNG---SSDAGNEQGTT--AALELAAAVVAAGLT-SASSDLSRRMMDTL-RWEGQAPPLEGKLVGIASRVRWMYLVRLAVELGLCDLNEWEEALH-LLAEPKK--PIDLESLHETRQGIHALFHGFRGGDGPLLLGGVFPRSTESRGELVSLIERGHSRLARFNVLLRAIWS-ESAG-TGRGSFEERTEALNTLVGVMLGESQLHPSFALKLFSALGLDVIRRAKSSPDKVPQSLQGEIANLGLSSGGVLS-EASQRAALAVTKLAALVRISEVLSKSRDELSL---DLAQRGAALQAELRVQVKAYAEHQQSQRRE--EVLSAAEDFIAEMPPEEAEHGPGNSQLDIMTHLLGAIITG-------------TP------------SGKEARAQSGVPDAAMVGSNHSSEQALASPTDRRTPDPMKQDRHRLDARGNLLEIFAKIASAMPCDPDQYVASAWRTMQASRTLARMERPRGDEEVELEAFELAVDAQALETLRESLLGAIDRPERN-----LCDLPVSVNGEIEQPLSGGIRLIT-VPLSGL------EVTH-DDEMKALQRQAEAVRYKNAMNIVARTGLALQPPAEAG-TPSLTAIVAAAKHAKRWKSAAQDDVSGLGRPELERLNSIMDMRITSLSDQLATLVRSKK-VEPGTAKQTKADHEVVLSPDDWVKRERQRLNVRIRIRKEKLHGMETRLRHIRKGDKGRTGDVEAIWMSEDERLEMETNLFLISRKIAKANFLLRKMRSRWDIFRERHRHLAPLVHDRL 760
BLAST of mRNA_L-elsbetiae_contig98.18749.1 vs. uniprot
Match: D7FJK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK7_ECTSI) HSP 1 Score: 423 bits (1087), Expect = 4.230e-130 Identity = 310/683 (45.39%), Postives = 383/683 (56.08%), Query Frame = 1
Query: 1507 QLRDNDDDRSPEAAEEAGQDGDAALEMAAVALAAGLTTSASPGLARKIQDALLEWEGQARPLEDKLIASASRIRWMYVLRLAVELGQCDQSQWEEVQQSLVVTPPRGGPVDLKGLYSTREDVHALLRASPGG-GPLLGGGVFPRLTESRGELTRLIERGQARLARLNALLRVLWEDESSGVTSVSPAKHRAGALNELVGVVIGESRLRPGVALRLFSALGSDAIRRARSGCEEVPPELARDVASLRLTPGGVVADEGAQRAAVAATELCAVLRIVGALAKGRNDESLRSPELVRRGAALQGELRGRIKNYSRPPDGRRRQAADVLGAAEDFVAELPPEPSEHGPGNSHLDLMVYLLGVVTSGRHQGPGDLFKSDATPDVLPGEDSVLLSSGETGPAQCDVSDVVRGDSANAEKEPQKSSADRSADGPEKRSGRQLGERGSLAEILAKIASAMPCDPDQTLASIWGAVKASLKISRPRGTEEAEAEVFELAIDAQVLEALNRSLHEAVEAPGRKGPSPALCDLPSAGTAQAPTPDAAERAAISWMPMEGHAPPSFGSVVHLGEENKTLQRQAEALRFKSTMNIVARTGLPLQDPVEAGRVTSVGALVAAATLAKRWKSAALNDGSGLGRPELERLNYLVDKRVENLSTQLTKLEKSNNDLARIMATPRVVAGEAVLSPESWAVR 3552
+LRDN S +A E G AALE+AA +AAGLT S S L+R++ D L WEGQA PLEDKL+ ASR+RWMY++RLAVELG CD S+W+EV +L+ P + P+DL LY TR+ +HAL GG GPLL GVFPR TESRGEL LIERGQARLA+LN LLR LW ES+G T + R ALN LVGV++GES+L P AL+LFSALG D IRRA+SG ++VP L D+A+L L+ GGV++ E +QRAA+A T+L A+ RI AL+K R++ SL ++ +RGAALQ ELR V G D G++H L T R TPD P K+ +L RG+L EI AKIASAMPCDPDQ +AS W ++A +I RPRG EE E E FELA+DAQ LE L SL EA+ P R L DLP + + P + I+ AP S V H +E K LQRQAEA+R+K+ MNIVARTGL L P G S+ A VAAA AKRW+SAA +DGSGLGRPELERLN +++ R+ NLS QL L +S N + A E VLSP+ W R
Sbjct: 18 KLRDNG---SSDAGNEQGTA--AALELAAAVIAAGLT-SGSSDLSRRMMDTL-RWEGQAPPLEDKLVGIASRVRWMYLVRLAVELGLCDLSEWQEVS-NLLAEPKK--PIDLGSLYETRQGIHALFHGFRGGDGPLLLDGVFPRSTESRGELVSLIERGQARLAKLNVLLRALWS-ESAG-TGRGSFEDRTEALNTLVGVMVGESQLHPNFALKLFSALGLDVIRRAKSGPDKVPQSLQGDIANLGLSSGGVLS-EASQRAALAVTKLAALARISEALSKSRDELSL---DVAQRGAALQAELR-------------------VQGGVPDAAMV----------GSNHSSEQA--LASPTDRR------------TPD------------------------------------------------PMKQDRHRLDARGNLLEIFAKIASAMPCDPDQDVASAWRTMQA--RIERPRGDEEVELEAFELAMDAQALETLRESLLEAIHRPERN-----LFDLPVSVNEEIEQPLSGGIRLIT-------APLSGSEVTH-DDEKKALQRQAEAVRYKNAMNIVARTGLALPSPAGVG-TPSLTAFVAAAKHAKRWRSAAQDDGSGLGRPELERLNSIMEMRITNLSDQLATLVRSKN-VEPGTAKQTKADHEVVLSPDDWVKR 576 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig98.18749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig98.18749.1 >prot_L-elsbetiae_contig98.18749.1 ID=prot_L-elsbetiae_contig98.18749.1|Name=mRNA_L-elsbetiae_contig98.18749.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1300bp QSLISQEEDETNDNRAAYQRFFVSIVDSTDKLDRLLAAIDTPTRANDEPNback to top mRNA from alignment at L-elsbetiae_contig98:4662..19932- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig98.18749.1 ID=mRNA_L-elsbetiae_contig98.18749.1|Name=mRNA_L-elsbetiae_contig98.18749.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=15271bp|location=Sequence derived from alignment at L-elsbetiae_contig98:4662..19932- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig98:4662..19932- >mRNA_L-elsbetiae_contig98.18749.1 ID=mRNA_L-elsbetiae_contig98.18749.1|Name=mRNA_L-elsbetiae_contig98.18749.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7800bp|location=Sequence derived from alignment at L-elsbetiae_contig98:4662..19932- (Laminarionema elsbetiae ELsaHSoW15)back to top |