mRNA_L-elsbetiae_contig9767.18724.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9767.18724.1 vs. uniprot
Match: A0A6H5KTI9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI9_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.090e-29 Identity = 60/84 (71.43%), Postives = 72/84 (85.71%), Query Frame = 1 Query: 1 KLISRLPMMRFRGGSRNFLSVDHEDDDKVSCRVCLSEYEDGNTLRILPCLHKFHQRCIDEWLGRSSLCPLCNTSVDVAEDSHVT 252 +L+ RLP M+++ SR L +H ++DKVSCRVCLS+YE G+TLRILPCLHKFH+ CIDEWLGRS LCPLCNTSV+VAEDSHVT Sbjct: 896 QLVERLPTMQYQESSRKVLVAEHGEEDKVSCRVCLSDYEAGDTLRILPCLHKFHRVCIDEWLGRSVLCPLCNTSVEVAEDSHVT 979
BLAST of mRNA_L-elsbetiae_contig9767.18724.1 vs. uniprot
Match: A0A7S2Y0A3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A3_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.900e-23 Identity = 50/85 (58.82%), Postives = 59/85 (69.41%), Query Frame = 1 Query: 1 KLISRLPMMRFRGGSRNFLSVDH---EDDDKVSCRVCLSEYEDGNTLRILPCLHKFHQRCIDEWLGRSSLCPLCNTSVDVAEDSH 246 +L++ LP + RG + + EDDDKVSCRVCLSEY+DG LR+LPC HKFH+ CIDEWL RS CPLCNTSVD A H Sbjct: 107 ELVALLPTVTHRGDCKAAATAQEAFGEDDDKVSCRVCLSEYQDGECLRVLPCFHKFHKGCIDEWLERSVCCPLCNTSVDKALQQH 191
BLAST of mRNA_L-elsbetiae_contig9767.18724.1 vs. uniprot
Match: A0A835ZD21_9STRA (FAD dependent oxidoreductase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD21_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 8.440e-15 Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 1 Query: 73 DDDKVSCRVCLSEYEDGNTLRILPCLHKFHQRCIDEWL-GRSSLCPLCNTSVDVAEDSH 246 D+DK+SCRVCL EYE G+ LRILPCLH++H C+DEWL RS CPLCNTSV V H Sbjct: 264 DEDKISCRVCLCEYEAGDELRILPCLHRYHVHCVDEWLVKRSPACPLCNTSVAVVLHGH 322
BLAST of mRNA_L-elsbetiae_contig9767.18724.1 vs. uniprot
Match: L8HAL1_ACACA (Zinc finger (C3HC4type RING finger) family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HAL1_ACACA) HSP 1 Score: 77.0 bits (188), Expect = 1.320e-13 Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1 Query: 73 DDDKVSCRVCLSEYEDGNTLRILPCLHKFHQRCIDEWLGRSSLCPLCNTSVDVAEDSH 246 D+ +C +CL EYEDG L+ LPCLH +HQ CIDEWL + LCP+C V A ++ Sbjct: 37 DEQLTTCTICLVEYEDGELLKTLPCLHSYHQECIDEWLSGNKLCPICKFDVTTAPSTY 94
BLAST of mRNA_L-elsbetiae_contig9767.18724.1 vs. uniprot
Match: A0C0B5_PARTE (RING-type domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0C0B5_PARTE) HSP 1 Score: 82.4 bits (202), Expect = 7.020e-13 Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 1 Query: 7 ISRLPMMRFRGGSRNFLSVDHEDDDKVSCRVCLSEYEDGNTLRILPCLHKFHQRCIDEWLGRSSLCPLCNTSVD 228 I++LP+ + S F++ DD+ + C +CL +YE+ +R +PC H FHQ CID+WL +S+LCP+C T VD Sbjct: 410 INQLPIRQI---SMEFINQHQNDDNHIKCMICLEDYEENQIVRTMPCWHYFHQECIDKWLHKSTLCPICKTEVD 480
BLAST of mRNA_L-elsbetiae_contig9767.18724.1 vs. uniprot
Match: A0A2L2Y4S9_PARTP (RING finger protein 38 (Fragment) n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2Y4S9_PARTP) HSP 1 Score: 74.3 bits (181), Expect = 1.540e-12 Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1 Query: 7 ISRLPMMRFRGGSRNFLSVDHEDDDKVS----CRVCLSEYEDGNTLRILPCLHKFHQRCIDEWLGRSSLCPLCNTSVDV 231 I+RLP ++ + N S + + C+VCLS+YE+G+TLRILPC H+FH CID WL + CP+C VD+ Sbjct: 25 INRLPTRQYIAANNNAGSSNELPHKRAGLNKECQVCLSDYENGDTLRILPCFHEFHTPCIDPWLKINHTCPVCRVVVDL 103
BLAST of mRNA_L-elsbetiae_contig9767.18724.1 vs. uniprot
Match: A0A7S2QJ38_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QJ38_9DINO) HSP 1 Score: 75.9 bits (185), Expect = 2.670e-12 Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1 Query: 73 DDDKVSCRVCLSEYEDGNTLRILPCLHKFHQRCIDEWLGRSSLCPLCNTSVDVAEDSHVTA 255 DD+ C VC+ YE G++LR LPCLH +HQ CIDEWL RS CP+C ++ E +TA Sbjct: 106 DDETSKCMVCMEAYEAGDSLRTLPCLHVYHQSCIDEWLARSPECPVCKRNITAVELPPLTA 166
BLAST of mRNA_L-elsbetiae_contig9767.18724.1 vs. uniprot
Match: A0A8B8DAP1_CRAVI (RING finger protein 44-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DAP1_CRAVI) HSP 1 Score: 73.6 bits (179), Expect = 3.190e-12 Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 1 Query: 58 SVDHEDDDKVSCRVCLSEYEDGNTLRILPCLHKFHQRCIDEWLGRSSLCPLCNTSVDVAE 237 +VD+E+D CR+C++++ DG + LPC H FH+ CID WL R ++CP+C SVDV E Sbjct: 52 NVDNENDS--DCRICITDFSDGEIIVTLPCKHIFHKTCIDTWLKRKAICPICRGSVDVKE 109
BLAST of mRNA_L-elsbetiae_contig9767.18724.1 vs. uniprot
Match: A0D9J0_PARTE (RING-type domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0D9J0_PARTE) HSP 1 Score: 79.7 bits (195), Expect = 5.050e-12 Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 1 Query: 1 KLISRLPMMRFRGGSRNFLSVDHEDDDKVSCRVCLSEYEDGNTLRILPCLHKFHQRCIDEWLGRSSLCPLCNTSVD 228 +LI+ LP+ + + F++ DD+ + C +CL +Y++ +R +PC H FHQ CID+WL +S+LCP+C T VD Sbjct: 410 ELINLLPVRQI---TMEFINQHQNDDNLIKCMICLEDYQENQFVRTMPCWHFFHQECIDKWLHKSTLCPICKTEVD 482
BLAST of mRNA_L-elsbetiae_contig9767.18724.1 vs. uniprot
Match: UPI001C4ACC95 (E3 ubiquitin ligase BIG BROTHER-related-like n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4ACC95) HSP 1 Score: 73.2 bits (178), Expect = 5.400e-12 Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 1 Query: 43 SRNFLSVDHEDDDKVSCRVCLSEYEDGNTLRILPCLHKFHQRCIDEWLGRSSLCPLCNTSVDVAED 240 SR++ + + +DD+ C +C EYEDG++L +L C HK+H CI++WL + +CP+CN V E+ Sbjct: 51 SRSYKAENMQDDNAEQCAICRLEYEDGDSLVVLSCKHKYHPECINKWLQLNKVCPICNAQVSTPEN 116 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9767.18724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9767.18724.1 >prot_L-elsbetiae_contig9767.18724.1 ID=prot_L-elsbetiae_contig9767.18724.1|Name=mRNA_L-elsbetiae_contig9767.18724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp MMRFRGGSRNFLSVDHEDDDKVSCRVCLSEYEDGNTLRILPCLHKFHQRCback to top mRNA from alignment at L-elsbetiae_contig9767:4258..7230- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9767.18724.1 ID=mRNA_L-elsbetiae_contig9767.18724.1|Name=mRNA_L-elsbetiae_contig9767.18724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2973bp|location=Sequence derived from alignment at L-elsbetiae_contig9767:4258..7230- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9767:4258..7230- >mRNA_L-elsbetiae_contig9767.18724.1 ID=mRNA_L-elsbetiae_contig9767.18724.1|Name=mRNA_L-elsbetiae_contig9767.18724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig9767:4258..7230- (Laminarionema elsbetiae ELsaHSoW15)back to top |