mRNA_L-elsbetiae_contig975.18712.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig975.18712.1 vs. uniprot
Match: D7G712_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G712_ECTSI) HSP 1 Score: 603 bits (1554), Expect = 6.010e-196 Identity = 439/902 (48.67%), Postives = 518/902 (57.43%), Query Frame = 1 Query: 10 ENPSPKRARRLHSIVAMRTSSCTPASEAAMAARRPGQVFLKHLQIEGFKTFCDSQKIDLCPGWKPLSSASREGSPAPSPLTVVFGGNGAGKSSVFDAVFFVL-GQSSKSIRSSGGSAQLVNDQSVLKNGANASASVTITFQKGEECQNMDVESEDDGKARSRAAMMQSLNDFVGVDMGDVDRYVLKQGSTMVCRRDGKQLLEFIERLAGTASLKTETEEVQTALDDLREEALGLEDDVQASLHARRKLQPQVDAFFAHQKDVAELRQEKTGLWQRKLALLRRAVKVRLTGLESTAAENQTEDAKLRGTIKSIKSKGKALTRALKLVDEGDAEIAKLSAQASKLDSTSDRTKARIVELEA-----------------------------------------------------------------------------------------DAESAKLRALCGSQQALVGRLEA----------------ARRAQTRPRTAGGSQQLPPPPNAAGRAGALRLLVGKLREDGGVVGAHGLLADLVLLRRQCDEAAVAAVLGSALRDTVVVQTRADGARVVAEVRAAGIPGRIRCDVLDEMRRGGSAVSAGKGGGGGQGSVSGLAPLSECVTTSDPRHLPAAEKRLRGWLLTETRHAAWAARSGPSRCSAANVVTASGELFYASGEVAVKAPHASTSSHTPRLALRSAGRQGSGXXXXXXXXXXXXXXXXXXXXTWQQEGMGEGGGNNADVDDAGVDVEVRLEKALGSLSAAETRMAELAREATQARFEFEDAQVVLATAKTKATECRREMSRIEEKVSAQHRLIAAGDGTSDNKRSEREDADEAQLEKLRQRQGGTAGEQPGSSKGGVAA-RRAELLTRRTQAV--LELRSLKAKADADRELRDEV 2388 E+P KRARR+ C+ EA R QV LK LQIEGFKTF DS+ ID+CPGW+P + + E S APSPLTVVFGGNGAGKS++FD VFFVL GQSSK IRSS GSAQLVNDQSVL+ G +A ASVTITFQK Q MD + E GKA SRAAMMQ+LN FVG DMGDVDRY+LKQGSTMVC RDGK+LL FIERLAGT LKT+ E+VQT LDDLRE+ L LE DVQ+S HAR+ LQPQV+AF AHQ AEL++EKT LW RKLALLR VRL +ES A+N E +LR +KS K+KGKALTRA K ++EG+ EI LSAQ+S+L + RI ELE D ESAKLRA C SQQAL+G LEA A+ + + + GG+ P+A GR GALR LV KLR+ G VGAHG+LADL+LLRR CDEAAVAAVLGSALR+TVVVQTR DGARVVA VRAAGI ++RCDVLDEMR G + QG L+PLSECVTTSDPRH PA EK LR WLL ETR AW AR PS+ SAAN+VT+SG H P QQ G +D+ +VEVRL++AL SLS AETR AELARE QARF+ EDAQ A+A+ A EC +++ +KVSAQ RL+ +G + ED +E QLEKLRQR+ GE + +G + RR E + T+A LELR+L+AKAD + R+EV Sbjct: 2 ESPRAKRARRI-------PPGCSKTPEATAVGSRE-QVLLKRLQIEGFKTFRDSEVIDVCPGWQP-TPYNEEESLAPSPLTVVFGGNGAGKSALFDGVFFVLSGQSSKCIRSSRGSAQLVNDQSVLQKGPDAFASVTITFQKAGAWQGMDTDGEQ-GKACSRAAMMQALNAFVGADMGDVDRYLLKQGSTMVCHRDGKELLSFIERLAGTTQLKTQAEQVQTDLDDLREDTLSLEVDVQSSAHARKGLQPQVEAFVAHQNQAAELQKEKTALWHRKLALLR----VRLEEMESILAKNNCEANQLREQMKSSKTKGKALTRARKQLEEGNVEIIALSAQSSELHLAVSGMQTRIDELERSPELNVPGGEGFDEREELVRELSSLEEDLLPELEKCIAERKRTLSQAGTLLDNLVSDASAARVEMEKRDGVAASSKNKLQDLRRRIAEMDTESAKLRAHCTSQQALIGHLEARRGSRDSADTDTRSPPAKSSSSSTKRQGGAVGRQSAPDAHGRVGALRSLVEKLRKGG--VGAHGMLADLLLLRRSCDEAAVAAVLGSALRNTVVVQTRKDGARVVAAVRAAGINVQVRCDVLDEMRNGNAXXXXXXXXXXXQG----LSPLSECVTTSDPRHFPAVEKHLRSWLLAETRQVAWGARRAPSKSSAANIVTSSG-----------------VGCHGP---------------------------------IQQQAG----------TEDSAHEVEVRLKRALESLSGAETRAAELARETAQARFDCEDAQARHASAQNSAKECLQKVLGAGQKVSAQRRLLVSGSNSCTA-----EDPEEIQLEKLRQRREIILGELAETKEGDSGSQRRVERINVDTRAAVTLELRNLRAKADTESGRREEV 818
BLAST of mRNA_L-elsbetiae_contig975.18712.1 vs. uniprot
Match: A0A835YP97_9STRA (RecF/RecN/SMC n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP97_9STRA) HSP 1 Score: 116 bits (291), Expect = 6.530e-23 Identity = 85/245 (34.69%), Postives = 133/245 (54.29%), Query Frame = 1 Query: 88 EAAMAARRPGQVFLKHLQIEGFKTFCDSQKIDLCPGWKPLSSASREGSPAPSPLTVVFGGNGAGKSSVFDAVFFVLGQSSKSIRSSGGSAQLVNDQSVLKNGANASASVTITFQK-------GEECQNMDVESED------DGKARSRAAMMQSLNDFVGVDMGDVDRYVLKQGSTMVCRRDGKQLLEFIERLAGTASLKTETEEVQTALDDLREEALGLEDDVQASLHARRKLQPQVDAFFAHQ 783 EA + +P +V LK + + GFK+F D +DLCP P ++ + G+ A T V GGNG GKS++ DA+ FVLG ++ +RS +AQL+ND+S SASV+ITFQ+ G + V S +G A +R M++ ++ F G M + DR+V++QG T++ +R +LL + E LAGT +L+ + L+ + L E+ Q R +L+PQV+ F +Q Sbjct: 71 EAQQQSVQPSRVVLKKVIVRGFKSFRDEVVVDLCPE-SPSAATAFRGTRAC--FTCVLGGNGVGKSALVDAILFVLGHAANQLRSQK-AAQLINDES-------QSASVSITFQRLGSEGDGGTLVVSRSVVSSGTSTYALNGSAVARGHMLEEVSRFCGCSMANPDRFVMRQGVTLLAQRGTAELLAYFEELAGTGTLRDDIAAANKKLEQAQTSLLAAEERSQDLAERRARLRPQVERFRQYQ 304
BLAST of mRNA_L-elsbetiae_contig975.18712.1 vs. uniprot
Match: A0A7C6KSQ8_9FIRM (Chromosome partition protein Smc n=1 Tax=Peptococcaceae bacterium TaxID=2052179 RepID=A0A7C6KSQ8_9FIRM) HSP 1 Score: 59.7 bits (143), Expect = 2.440e-5 Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1 Query: 97 MAARRPGQVFLKHLQIEGFKTFCDSQKIDLCPGWKPLSSASREGSPAPSPLTVVFGGNGAGKSSVFDAVFFVLG-QSSKSIR 339 M A++ QVFLK +QI+GFK+F D ++D PG L+V+ G NG+GKS+V DAV +VLG QS+KS+R Sbjct: 1 MTAKKNPQVFLKAIQIQGFKSFADKIRLDFQPG-----------------LSVIVGPNGSGKSNVADAVRWVLGEQSAKSLR 65
BLAST of mRNA_L-elsbetiae_contig975.18712.1 vs. uniprot
Match: A0A7X6NEH3_9MICO (AAA family ATPase (Fragment) n=1 Tax=Microbacteriaceae bacterium TaxID=1873462 RepID=A0A7X6NEH3_9MICO) HSP 1 Score: 58.2 bits (139), Expect = 6.280e-5 Identity = 82/315 (26.03%), Postives = 141/315 (44.76%), Query Frame = 1 Query: 121 VFLKHLQIEGFKTFCDSQKIDLCPGWKPLSSASREGSPAPSPLTVVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSS-------GGSAQL--VNDQSVLKNGANASASVTITFQKGEECQNMDVESEDDGKARSRAAMMQSLNDFVGVD-MGDVDRYVLKQG---STMVCRRDGKQLLEFIERLAGTASLKTETEEVQTALDDLREEALGLEDDVQASLHARRKLQPQVDAFFAHQKDVAELRQEKTGLWQRKLALLRRAVKVRLTGLESTAAENQTEDAKLRGTIKSIKSKGKALTRALKLVDEGDAEIAKLSAQ 1023 +FLK LQI+GFK+F D+ + L PG +TVV G NG+GKS+V DA+ +VLG Q+ ++RS GSA+ + V N++ ++ I F + + + + + + + + + D + +G ++ QG + + + + ++L+ IE AG + E+ + L+ L ++D ++ R L+ Q DA H+ + EL K L R+L LR+ ++ EST +N+ LR T + IK + L DAEI + AQ Sbjct: 1 MFLKTLQIKGFKSFADAATLQLEPG-----------------VTVVVGPNGSGKSNVVDAIGWVLGAQAPSAVRSQKMDDVIFAGSAKRPSLGRAEVSLTIDNSTGTLPIEFNEVTITRTLFRSGDSEYQINGVSCRLLDIQDLLSDSGVGRQQHVIISQGQIDAVLNAKPEDRRLI--IEEAAGVLKYRRRKEKSERRLNATEANLLRIQDLLREVRRQLRPLERQADAARRHEAVITELGALKLYLMGRELFRLRQQLQ------ESTRTQNE-----LRTTDREIKRRLAGL----------DAEIMSIEAQ 275
BLAST of mRNA_L-elsbetiae_contig975.18712.1 vs. uniprot
Match: A0A350D6A5_9BACT (Chromosome segregation protein SMC (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A350D6A5_9BACT) HSP 1 Score: 57.4 bits (137), Expect = 9.590e-5 Identity = 80/333 (24.02%), Postives = 146/333 (43.84%), Query Frame = 1 Query: 121 VFLKHLQIEGFKTFCDSQKIDLCPGWKPLSSASREGSPAPSPLTVVFGGNGAGKSSVFDAVFFVLGQSS-KSIRSSGGSAQLVNDQSVLKNGAN-----ASASVTITFQKGEEC---QNMDVESEDDGKARSRAAMMQSLNDFVGVD-MGDVDRYVLKQGST---MVCRRDGKQLLEFIERLAGTASLKTETEEVQTALDDLREEALGLEDDVQASLHARRKLQPQVDAFFAHQKDVAELRQEKTGLWQRKLALLRRAVKVRLTGLESTAAENQTEDAKLRGTIKSIKSKGKALTRALKLVDEGDAEIAKLSAQASKLDSTSDRTKARIVELE 1080 +F+K L+++GFK+F D KI PG +T V G NG GKS++ DA+ + LG KS+RS + ++ NG + A V +T EE + E D + ++ ++ + D + + +G+ + +V++QGS + + K+ L IE AGTA K + + Q+ L+ + LED + ++ L Q A +++ R+ + R++ L + ++ +E Q A+++ ++I + K L K + E + L Q S+ +S S+R R+ LE Sbjct: 1 MFIKKLEVQGFKSFADRTKILFHPG-----------------ITAVVGPNGTGKSNIVDAILWGLGGIRLKSVRSD-------RTEDIIFNGNTKRPPVSLADVVLTLGNEEELVISHRVFRSGESDYRLNGKSVRLKDIQDELWKNSIGEREYFVIEQGSIGSFVTSKPLEKRAL--IEEAAGTAYYKDKKRQAQSKLESSEQNLTRLEDIIIEVEKSKNSLYRQALAAARYRRLRERQRELTAHHFYRRMLKLDQGLEDITREIEKALTAEQDLTARVKEGERNIAALRKNLWDEEKSLKEKQERVFNLQTQLSRTESESEREAKRLEYLE 307 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig975.18712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig975.18712.1 >prot_L-elsbetiae_contig975.18712.1 ID=prot_L-elsbetiae_contig975.18712.1|Name=mRNA_L-elsbetiae_contig975.18712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=796bp MDQENPSPKRARRLHSIVAMRTSSCTPASEAAMAARRPGQVFLKHLQIEGback to top mRNA from alignment at L-elsbetiae_contig975:19083..29984+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig975.18712.1 ID=mRNA_L-elsbetiae_contig975.18712.1|Name=mRNA_L-elsbetiae_contig975.18712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10902bp|location=Sequence derived from alignment at L-elsbetiae_contig975:19083..29984+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig975:19083..29984+ >mRNA_L-elsbetiae_contig975.18712.1 ID=mRNA_L-elsbetiae_contig975.18712.1|Name=mRNA_L-elsbetiae_contig975.18712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4776bp|location=Sequence derived from alignment at L-elsbetiae_contig975:19083..29984+ (Laminarionema elsbetiae ELsaHSoW15)back to top |