prot_L-elsbetiae_contig975.18712.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig975.18712.1
Unique Nameprot_L-elsbetiae_contig975.18712.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length796
Homology
BLAST of mRNA_L-elsbetiae_contig975.18712.1 vs. uniprot
Match: D7G712_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G712_ECTSI)

HSP 1 Score: 603 bits (1554), Expect = 6.010e-196
Identity = 439/902 (48.67%), Postives = 518/902 (57.43%), Query Frame = 0
Query:    4 ENPSPKRARRLHSIVAMRTSSCTPASEAAMAARRPGQVFLKHLQIEGFKTFCDSQKIDLCPGWKPLSSASREGSPAPSPLTVVFGGNGAGKSSVFDAVFFVL-GQSSKSIRSSGGSAQLVNDQSVLKNGANASASVTITFQKGEECQNMDVESEDDGKARSRAAMMQSLNDFVGVDMGDVDRYVLKQGSTMVCRRDGKQLLEFIERLAGTASLKTETEEVQTALDDLREEALGLEDDVQASLHARRKLQPQVDAFFAHQKDVAELRQEKTGLWQRKLALLRRAVKVRLTGLESTAAENQTEDAKLRGTIKSIKSKGKALTRALKLVDEGDAEIAKLSAQASKLDSTSDRTKARIVELEA-----------------------------------------------------------------------------------------DAESAKLRALCGSQQALVGRLEA----------------ARRAQTRPRTAGGSQQLPPPPNAAGRAGALRLLVGKLREDGGVVGAHGLLADLVLLRRQCDEAAVAAVLGSALRDTVVVQTRADGARVVAEVRAAGIPGRIRCDVLDEMRRGGSAVSAGKGGGGGQGSVSGLAPLSECVTTSDPRHLPAAEKRLRGWLLTETRHAAWAARSGPSRCSAANVVTASGELFYASGEVAVKAPHASTSSHTPRLALRSAGRQGSGXXXXXXXXXXXXXXXXXXXXTWQQEGMGEGGGNNADVDDAGVDVEVRLEKALGSLSAAETRMAELAREATQARFEFEDAQVVLATAKTKATECRREMSRIEEKVSAQHRLIAAGDGTSDNKRSEREDADEAQLEKLRQRQGGTAGEQPGSSKGGVAA-RRAELLTRRTQAV--LELRSLKAKADADRELRDEV 796
            E+P  KRARR+          C+   EA     R  QV LK LQIEGFKTF DS+ ID+CPGW+P +  + E S APSPLTVVFGGNGAGKS++FD VFFVL GQSSK IRSS GSAQLVNDQSVL+ G +A ASVTITFQK    Q MD + E  GKA SRAAMMQ+LN FVG DMGDVDRY+LKQGSTMVC RDGK+LL FIERLAGT  LKT+ E+VQT LDDLRE+ L LE DVQ+S HAR+ LQPQV+AF AHQ   AEL++EKT LW RKLALLR    VRL  +ES  A+N  E  +LR  +KS K+KGKALTRA K ++EG+ EI  LSAQ+S+L       + RI ELE                                                                                          D ESAKLRA C SQQAL+G LEA                A+ + +  +  GG+      P+A GR GALR LV KLR+ G  VGAHG+LADL+LLRR CDEAAVAAVLGSALR+TVVVQTR DGARVVA VRAAGI  ++RCDVLDEMR G +           QG    L+PLSECVTTSDPRH PA EK LR WLL ETR  AW AR  PS+ SAAN+VT+SG                    H P                                   QQ G           +D+  +VEVRL++AL SLS AETR AELARE  QARF+ EDAQ   A+A+  A EC +++    +KVSAQ RL+ +G  +        ED +E QLEKLRQR+    GE   + +G   + RR E +   T+A   LELR+L+AKAD +   R+EV
Sbjct:    2 ESPRAKRARRI-------PPGCSKTPEATAVGSRE-QVLLKRLQIEGFKTFRDSEVIDVCPGWQP-TPYNEEESLAPSPLTVVFGGNGAGKSALFDGVFFVLSGQSSKCIRSSRGSAQLVNDQSVLQKGPDAFASVTITFQKAGAWQGMDTDGEQ-GKACSRAAMMQALNAFVGADMGDVDRYLLKQGSTMVCHRDGKELLSFIERLAGTTQLKTQAEQVQTDLDDLREDTLSLEVDVQSSAHARKGLQPQVEAFVAHQNQAAELQKEKTALWHRKLALLR----VRLEEMESILAKNNCEANQLREQMKSSKTKGKALTRARKQLEEGNVEIIALSAQSSELHLAVSGMQTRIDELERSPELNVPGGEGFDEREELVRELSSLEEDLLPELEKCIAERKRTLSQAGTLLDNLVSDASAARVEMEKRDGVAASSKNKLQDLRRRIAEMDTESAKLRAHCTSQQALIGHLEARRGSRDSADTDTRSPPAKSSSSSTKRQGGAVGRQSAPDAHGRVGALRSLVEKLRKGG--VGAHGMLADLLLLRRSCDEAAVAAVLGSALRNTVVVQTRKDGARVVAAVRAAGINVQVRCDVLDEMRNGNAXXXXXXXXXXXQG----LSPLSECVTTSDPRHFPAVEKHLRSWLLAETRQVAWGARRAPSKSSAANIVTSSG-----------------VGCHGP---------------------------------IQQQAG----------TEDSAHEVEVRLKRALESLSGAETRAAELARETAQARFDCEDAQARHASAQNSAKECLQKVLGAGQKVSAQRRLLVSGSNSCTA-----EDPEEIQLEKLRQRREIILGELAETKEGDSGSQRRVERINVDTRAAVTLELRNLRAKADTESGRREEV 818          
BLAST of mRNA_L-elsbetiae_contig975.18712.1 vs. uniprot
Match: A0A835YP97_9STRA (RecF/RecN/SMC n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP97_9STRA)

HSP 1 Score: 116 bits (291), Expect = 6.530e-23
Identity = 85/245 (34.69%), Postives = 133/245 (54.29%), Query Frame = 0
Query:   30 EAAMAARRPGQVFLKHLQIEGFKTFCDSQKIDLCPGWKPLSSASREGSPAPSPLTVVFGGNGAGKSSVFDAVFFVLGQSSKSIRSSGGSAQLVNDQSVLKNGANASASVTITFQK-------GEECQNMDVESED------DGKARSRAAMMQSLNDFVGVDMGDVDRYVLKQGSTMVCRRDGKQLLEFIERLAGTASLKTETEEVQTALDDLREEALGLEDDVQASLHARRKLQPQVDAFFAHQ 261
            EA   + +P +V LK + + GFK+F D   +DLCP   P ++ +  G+ A    T V GGNG GKS++ DA+ FVLG ++  +RS   +AQL+ND+S        SASV+ITFQ+       G    +  V S        +G A +R  M++ ++ F G  M + DR+V++QG T++ +R   +LL + E LAGT +L+ +       L+  +   L  E+  Q     R +L+PQV+ F  +Q
Sbjct:   71 EAQQQSVQPSRVVLKKVIVRGFKSFRDEVVVDLCPE-SPSAATAFRGTRAC--FTCVLGGNGVGKSALVDAILFVLGHAANQLRSQK-AAQLINDES-------QSASVSITFQRLGSEGDGGTLVVSRSVVSSGTSTYALNGSAVARGHMLEEVSRFCGCSMANPDRFVMRQGVTLLAQRGTAELLAYFEELAGTGTLRDDIAAANKKLEQAQTSLLAAEERSQDLAERRARLRPQVERFRQYQ 304          
BLAST of mRNA_L-elsbetiae_contig975.18712.1 vs. uniprot
Match: A0A7C6KSQ8_9FIRM (Chromosome partition protein Smc n=1 Tax=Peptococcaceae bacterium TaxID=2052179 RepID=A0A7C6KSQ8_9FIRM)

HSP 1 Score: 59.7 bits (143), Expect = 2.440e-5
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 0
Query:   33 MAARRPGQVFLKHLQIEGFKTFCDSQKIDLCPGWKPLSSASREGSPAPSPLTVVFGGNGAGKSSVFDAVFFVLG-QSSKSIR 113
            M A++  QVFLK +QI+GFK+F D  ++D  PG                 L+V+ G NG+GKS+V DAV +VLG QS+KS+R
Sbjct:    1 MTAKKNPQVFLKAIQIQGFKSFADKIRLDFQPG-----------------LSVIVGPNGSGKSNVADAVRWVLGEQSAKSLR 65          
BLAST of mRNA_L-elsbetiae_contig975.18712.1 vs. uniprot
Match: A0A7X6NEH3_9MICO (AAA family ATPase (Fragment) n=1 Tax=Microbacteriaceae bacterium TaxID=1873462 RepID=A0A7X6NEH3_9MICO)

HSP 1 Score: 58.2 bits (139), Expect = 6.280e-5
Identity = 82/315 (26.03%), Postives = 141/315 (44.76%), Query Frame = 0
Query:   41 VFLKHLQIEGFKTFCDSQKIDLCPGWKPLSSASREGSPAPSPLTVVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSS-------GGSAQL--VNDQSVLKNGANASASVTITFQKGEECQNMDVESEDDGKARSRAAMMQSLNDFVGVD-MGDVDRYVLKQG---STMVCRRDGKQLLEFIERLAGTASLKTETEEVQTALDDLREEALGLEDDVQASLHARRKLQPQVDAFFAHQKDVAELRQEKTGLWQRKLALLRRAVKVRLTGLESTAAENQTEDAKLRGTIKSIKSKGKALTRALKLVDEGDAEIAKLSAQ 341
            +FLK LQI+GFK+F D+  + L PG                 +TVV G NG+GKS+V DA+ +VLG Q+  ++RS         GSA+   +    V     N++ ++ I F +    + +    + + +    +  +  + D +    +G     ++ QG   + +  + + ++L+  IE  AG    +   E+ +  L+      L ++D ++      R L+ Q DA   H+  + EL   K  L  R+L  LR+ ++      EST  +N+     LR T + IK +   L          DAEI  + AQ
Sbjct:    1 MFLKTLQIKGFKSFADAATLQLEPG-----------------VTVVVGPNGSGKSNVVDAIGWVLGAQAPSAVRSQKMDDVIFAGSAKRPSLGRAEVSLTIDNSTGTLPIEFNEVTITRTLFRSGDSEYQINGVSCRLLDIQDLLSDSGVGRQQHVIISQGQIDAVLNAKPEDRRLI--IEEAAGVLKYRRRKEKSERRLNATEANLLRIQDLLREVRRQLRPLERQADAARRHEAVITELGALKLYLMGRELFRLRQQLQ------ESTRTQNE-----LRTTDREIKRRLAGL----------DAEIMSIEAQ 275          
BLAST of mRNA_L-elsbetiae_contig975.18712.1 vs. uniprot
Match: A0A350D6A5_9BACT (Chromosome segregation protein SMC (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A350D6A5_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 9.590e-5
Identity = 80/333 (24.02%), Postives = 146/333 (43.84%), Query Frame = 0
Query:   41 VFLKHLQIEGFKTFCDSQKIDLCPGWKPLSSASREGSPAPSPLTVVFGGNGAGKSSVFDAVFFVLGQSS-KSIRSSGGSAQLVNDQSVLKNGAN-----ASASVTITFQKGEEC---QNMDVESEDDGKARSRAAMMQSLNDFVGVD-MGDVDRYVLKQGST---MVCRRDGKQLLEFIERLAGTASLKTETEEVQTALDDLREEALGLEDDVQASLHARRKLQPQVDAFFAHQKDVAELRQEKTGLWQRKLALLRRAVKVRLTGLESTAAENQTEDAKLRGTIKSIKSKGKALTRALKLVDEGDAEIAKLSAQASKLDSTSDRTKARIVELE 360
            +F+K L+++GFK+F D  KI   PG                 +T V G NG GKS++ DA+ + LG    KS+RS          + ++ NG       + A V +T    EE      +    E D +   ++  ++ + D +  + +G+ + +V++QGS    +  +   K+ L  IE  AGTA  K +  + Q+ L+   +    LED +     ++  L  Q  A   +++     R+     + R++  L + ++     +E      Q   A+++   ++I +  K L    K + E    +  L  Q S+ +S S+R   R+  LE
Sbjct:    1 MFIKKLEVQGFKSFADRTKILFHPG-----------------ITAVVGPNGTGKSNIVDAILWGLGGIRLKSVRSD-------RTEDIIFNGNTKRPPVSLADVVLTLGNEEELVISHRVFRSGESDYRLNGKSVRLKDIQDELWKNSIGEREYFVIEQGSIGSFVTSKPLEKRAL--IEEAAGTAYYKDKKRQAQSKLESSEQNLTRLEDIIIEVEKSKNSLYRQALAAARYRRLRERQRELTAHHFYRRMLKLDQGLEDITREIEKALTAEQDLTARVKEGERNIAALRKNLWDEEKSLKEKQERVFNLQTQLSRTESESEREAKRLEYLE 307          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig975.18712.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G712_ECTSI6.010e-19648.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YP97_9STRA6.530e-2334.69RecF/RecN/SMC n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7C6KSQ8_9FIRM2.440e-545.12Chromosome partition protein Smc n=1 Tax=Peptococc... [more]
A0A7X6NEH3_9MICO6.280e-526.03AAA family ATPase (Fragment) n=1 Tax=Microbacteria... [more]
A0A350D6A5_9BACT9.590e-524.02Chromosome segregation protein SMC (Fragment) n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 212..239
NoneNo IPR availableCOILSCoilCoilcoord: 349..369
NoneNo IPR availableCOILSCoilCoilcoord: 654..681
NoneNo IPR availableCOILSCoilCoilcoord: 689..709
NoneNo IPR availableGENE3D3.40.50.300coord: 41..390
e-value: 1.4E-21
score: 79.5
NoneNo IPR availablePANTHERPTHR43939:SF1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 4coord: 421..744
coord: 84..367
NoneNo IPR availablePANTHERPTHR43939FAMILY NOT NAMEDcoord: 84..367
NoneNo IPR availablePANTHERPTHR43939FAMILY NOT NAMEDcoord: 421..744
IPR038729Rad50/SbcC-type AAA domainPFAMPF13476AAA_23coord: 46..251
e-value: 1.7E-14
score: 54.8
IPR010935SMCs flexible hingePFAMPF06470SMC_hingecoord: 429..550
e-value: 6.0E-8
score: 33.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 42..364

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig975contigL-elsbetiae_contig975:19083..29984 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig975.18712.1mRNA_L-elsbetiae_contig975.18712.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig975 19083..29984 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig975.18712.1 ID=prot_L-elsbetiae_contig975.18712.1|Name=mRNA_L-elsbetiae_contig975.18712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=796bp
MDQENPSPKRARRLHSIVAMRTSSCTPASEAAMAARRPGQVFLKHLQIEG
FKTFCDSQKIDLCPGWKPLSSASREGSPAPSPLTVVFGGNGAGKSSVFDA
VFFVLGQSSKSIRSSGGSAQLVNDQSVLKNGANASASVTITFQKGEECQN
MDVESEDDGKARSRAAMMQSLNDFVGVDMGDVDRYVLKQGSTMVCRRDGK
QLLEFIERLAGTASLKTETEEVQTALDDLREEALGLEDDVQASLHARRKL
QPQVDAFFAHQKDVAELRQEKTGLWQRKLALLRRAVKVRLTGLESTAAEN
QTEDAKLRGTIKSIKSKGKALTRALKLVDEGDAEIAKLSAQASKLDSTSD
RTKARIVELEADAESAKLRALCGSQQALVGRLEAARRAQTRPRTAGGSQQ
LPPPPNAAGRAGALRLLVGKLREDGGVVGAHGLLADLVLLRRQCDEAAVA
AVLGSALRDTVVVQTRADGARVVAEVRAAGIPGRIRCDVLDEMRRGGSAV
SAGKGGGGGQGSVSGLAPLSECVTTSDPRHLPAAEKRLRGWLLTETRHAA
WAARSGPSRCSAANVVTASGELFYASGEVAVKAPHASTSSHTPRLALRSA
GRQGSGGSGGGGGGGGPQPPPRRQTSTWQQEGMGEGGGNNADVDDAGVDV
EVRLEKALGSLSAAETRMAELAREATQARFEFEDAQVVLATAKTKATECR
REMSRIEEKVSAQHRLIAAGDGTSDNKRSEREDADEAQLEKLRQRQGGTA
GEQPGSSKGGVAARRAELLTRRTQAVLELRSLKAKADADRELRDEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038729Rad50/SbcC_AAA
IPR010935SMC_hinge
IPR027417P-loop_NTPase