mRNA_L-elsbetiae_contig9459.18447.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9459.18447.1
Unique NamemRNA_L-elsbetiae_contig9459.18447.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9459.18447.1 vs. uniprot
Match: D8LKH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH3_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 2.470e-46
Identity = 95/168 (56.55%), Postives = 116/168 (69.05%), Query Frame = 1 
Query:   13 QGDFEAVKRTLLEKEDALTRGTGSFLMADTIERFRGCSTRRPATNETSKRREGLGQRSRARRGTAT-DSDPFQYGNCNADRLLREGARRQELLVHAKTRSNIFCRRKGYEPGDFLEHRA--GGGGFRSSTDR----------GRGENSDRSAAAAAIAAESRRKVHRH 477
            +G+FEA KRTLLEKEDAL +GTGSFLMADTI+RFR  S  RP T++ S RR    +R+ A+R     +SDPFQ G  N+++L RE  RRQ+LLVHAK R+N+FCRRKGYEPGDFL+HR+  GG  F S              G  +   RSA AAA+AAESRRK H+H
Sbjct:   13 KGNFEAEKRTLLEKEDALRKGTGSFLMADTIQRFRSSSEGRPPTSDLSARRGSQRRRAAAKRAMVPIESDPFQCGGYNSEKLKREETRRQDLLVHAKGRNNMFCRRKGYEPGDFLKHRSPPGGQDFNSGAASCRRGSVGGAIGARKGGARSAEAAAMAAESRRKAHQH 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9459.18447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKH3_ECTSI2.470e-4656.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9459contigL-elsbetiae_contig9459:2430..4960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002960.1
Exons4
Model size477
Cds size477
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9459.18447.1prot_L-elsbetiae_contig9459.18447.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9459 2430..4960 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817013.3656454-CDS-L-elsbetiae_contig9459:2429..25741622817013.3656454-CDS-L-elsbetiae_contig9459:2429..2574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9459 2430..2574 -
1691683982.7374933-CDS-L-elsbetiae_contig9459:2429..25741691683982.7374933-CDS-L-elsbetiae_contig9459:2429..2574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9459 2430..2574 -
1622817013.380391-CDS-L-elsbetiae_contig9459:3363..35071622817013.380391-CDS-L-elsbetiae_contig9459:3363..3507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9459 3364..3507 -
1691683982.7501755-CDS-L-elsbetiae_contig9459:3363..35071691683982.7501755-CDS-L-elsbetiae_contig9459:3363..3507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9459 3364..3507 -
1622817013.3946116-CDS-L-elsbetiae_contig9459:4032..41301622817013.3946116-CDS-L-elsbetiae_contig9459:4032..4130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9459 4033..4130 -
1691683982.7587767-CDS-L-elsbetiae_contig9459:4032..41301691683982.7587767-CDS-L-elsbetiae_contig9459:4032..4130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9459 4033..4130 -
1622817013.410418-CDS-L-elsbetiae_contig9459:4870..49601622817013.410418-CDS-L-elsbetiae_contig9459:4870..4960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9459 4871..4960 -
1691683982.7667513-CDS-L-elsbetiae_contig9459:4870..49601691683982.7667513-CDS-L-elsbetiae_contig9459:4870..4960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9459 4871..4960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9459.18447.1

>prot_L-elsbetiae_contig9459.18447.1 ID=prot_L-elsbetiae_contig9459.18447.1|Name=mRNA_L-elsbetiae_contig9459.18447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MERHQGDFEAVKRTLLEKEDALTRGTGSFLMADTIERFRGCSTRRPATNE
TSKRREGLGQRSRARRGTATDSDPFQYGNCNADRLLREGARRQELLVHAK
TRSNIFCRRKGYEPGDFLEHRAGGGGFRSSTDRGRGENSDRSAAAAAIAA
ESRRKVHRH
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mRNA from alignment at L-elsbetiae_contig9459:2430..4960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9459.18447.1 ID=mRNA_L-elsbetiae_contig9459.18447.1|Name=mRNA_L-elsbetiae_contig9459.18447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2531bp|location=Sequence derived from alignment at L-elsbetiae_contig9459:2430..4960- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAACGGCACCAGGGGGACTTCGAGGCGGTAAAGCGCACACTTTTGGA
GAAGGAGGACGCCCTGACGAGAGGAACGGGTTCGTTTCTGGTGAGTTTGC
TCCCCATGGTGTGACCGAATTGAACACGGCGTGCAAAAAGGACTACGAAG
CCGTTGTCAGCTGGTTCAGAGAACTCATTATCGCACATCACAATTAACCC
ACGAGGCACGGCATACTCGCTGCGGATGACTATCCCGCTTTTTCTTCATG
ACCTGTTGTATTCACAACAAGTGCTACACCCCCAAGTCCACACTAACACT
ACTTTGTTTCTTAATCCCACGGCGCGTATGTTCAACTTGGCGAACACATG
CGTTTAGCTGTATTCCGAGCATGATGGTAGGATCGTGTCTGGTCGAAACC
GTATACCTTCTCCGCCCGGCATTGCCGAGTAGCAAGATCCAAGCTTGTAC
GCCACAGTATTCAAATCACAGCTGCATGTAGATTTCTCTTGCTCGATGGC
ACCTTGTCTTCACGAAGACGATTATCGGTCAGTGTGGCTAAAGCCGAGTC
TGGCAACCGGTCGGCTCGTACTTTAGTTTTCCTCTGGTAAAATCCGCGCT
CGACACATATTGATTGGTTGCCCAAACACTTCACTTGCTGGTGTTACAGG
ACTGCCAGCTAGTAAACAAGGTCGATCAATTTTGGGGAAGAGACAGGGAA
GCAGTTCTATCCCACCTTTCAGTCGCTAAAATCTGTGAAGACGTATGATA
TGTGCTTCACCTGCCGTTCGTCAACCGTGCCATATATTTCTATGTTCTGT
CAATGAATGCTAAATTTCCACCTCGAGGAGATGGCGGATACAATTGAGCG
ATTCCGTGGATGCTCGACGAGAAGGCCGGCGACAAACGAAACCTCGAAGA
GAAGAGAAGGGCTAGGCCAAAGGTCTAGGTAAATCCAAATCATGTCACCA
AAAGGGTCTCACTTTGACATAACTTTTCAATCTCGCACCCTGCAGTGACG
CGTTCAATAAATGCCGCCCCCGAAGGAGGCGAGGAGGACTACCCTAACCC
TAAACTAGAACTAGATTCCCGTCCCCTCCCTGCCCGAGTTCGTACGACAG
AGGTTTCAATCATCGTCGTTATAGAGGGCTAGGCATATTCCCCCACGATT
TCCCTGACCACCATACTCCCACGATTCACTCTTAAGCTGTTGCATGGTGT
CATTGCTCTATCAGGGCTGTGATTGAAAGAACCCTGACACATCAGTTTGC
CTCTGTAGCTGATTGATTCTCTGCGTTGCCGATGAAATGAAAATCGGATA
TTACCTGCTCTCCGTTGATAGTCTGAATGCACGATCCCTTTGATCTTCAA
CACGAAGCATGTCGTTGCATCAGAAGGTCACGCGGGCGTCTGAAAGTGAT
CATCGTAAGTATTCCCTTCGAAACAGGCCGGTGCTGGGGAAAACCGTATC
GAGAGCTAGACGAGGGACGGCTACCGATTCAGACCCCTTCCAGTACGGCA
ATTGCAACGCTGACAGGCTCCTGAGAGAGGGGGCGAGGAGACAAGAGCTG
CTCGTGCACGCCAAGACTAGGAGCAATATCTTCTGCAGGCGAAAGGGGTA
CGGATGAACGATGAATCCCGCAAATAAATTCCTTTGAAAAAACGTGTAAA
AACGATAGCTAAAGTGTACTAGTACTGAGTTGACGTGCGTAAACAGACGC
GTAAAAGGTGCGCAGATTGAGTCCAACAATGAGAAGCGGGGTGGAGAGGG
CACGGCACCCGATTTGATATCAAAGTGCGTGTAGTATCCACCTTGAACAA
GCGGCACTGTATAATGCGAGGGGAAATGAGTCAAAGGAGTGCACGTCTCT
GAGTCAACTGCATTTAGACTAGCTGCATATCTAGCTGTCTTATATACGCA
CCGATAAAATCAGCAAGCTACCAAATAGAACAGCCCTCGATTGCTTCTTC
ACCTCCGCGACCTTGCTACCTTCCCATACACCCATGATTGTTTTAACCCT
TAAGCATTATCTTCTCTTCCACCATCATAGAGCGGCATTGCATTGCGAAC
TTCTTCTGCCCTCGCTCTCGGTTAAATCTTCTTTTTTGCGGTTCGAAAGC
TTCCAGGAGTTTGTTGCGAAACGCGGGCTACATCGTCCACTTCCCTCGAA
CTCGTAGTGAGGTGGCAACATTCCACCTGGGGCACCTTGTGACGGCCCTT
CTCAATCAAGATTCCCACTTTCGAACTTATACATACATACGTAGTAGCAC
TGCCGTTGCAAAGTACATGTCAATCAATCAAATTTATGAAGCCTTTTGCA
TTGAATAATATTTTAGTCGCCTTCTGTCTAACGGAAATACTTTTCCATTG
TGCCGCAAATACATGGGTTTTGTTCTCAACAAGCAGGTACGAGCCCGGTG
ATTTCCTCGAGCACCGTGCGGGTGGTGGCGGCTTCAGAAGCAGCACTGAC
AGGGGCAGGGGGGAAAACTCCGATCGTTCTGCTGCTGCGGCTGCCATTGC
CGCCGAGTCTCGCCGGAAGGTGCACCGCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9459:2430..4960-

>mRNA_L-elsbetiae_contig9459.18447.1 ID=mRNA_L-elsbetiae_contig9459.18447.1|Name=mRNA_L-elsbetiae_contig9459.18447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig9459:2430..4960- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAACGGCACCAGGGGGACTTCGAGGCGGTAAAGCGCACACTTTTGGA
GAAGGAGGACGCCCTGACGAGAGGAACGGGTTCGTTTCTGATGGAACGGC
ACCAGGGGGACTTCGAGGCGGTAAAGCGCACACTTTTGGAGAAGGAGGAC
GCCCTGACGAGAGGAACGGGTTCGTTTCTGATGGCGGATACAATTGAGCG
ATTCCGTGGATGCTCGACGAGAAGGCCGGCGACAAACGAAACCTCGAAGA
GAAGAGAAGGGCTAGGCCAAAGGTCTAGATGGCGGATACAATTGAGCGAT
TCCGTGGATGCTCGACGAGAAGGCCGGCGACAAACGAAACCTCGAAGAGA
AGAGAAGGGCTAGGCCAAAGGTCTAGAGCTAGACGAGGGACGGCTACCGA
TTCAGACCCCTTCCAGTACGGCAATTGCAACGCTGACAGGCTCCTGAGAG
AGGGGGCGAGGAGACAAGAGCTGCTCGTGCACGCCAAGACTAGGAGCAAT
ATCTTCTGCAGGCGAAAGGGAGCTAGACGAGGGACGGCTACCGATTCAGA
CCCCTTCCAGTACGGCAATTGCAACGCTGACAGGCTCCTGAGAGAGGGGG
CGAGGAGACAAGAGCTGCTCGTGCACGCCAAGACTAGGAGCAATATCTTC
TGCAGGCGAAAGGGGTACGAGCCCGGTGATTTCCTCGAGCACCGTGCGGG
TGGTGGCGGCTTCAGAAGCAGCACTGACAGGGGCAGGGGGGAAAACTCCG
ATCGTTCTGCTGCTGCGGCTGCCATTGCCGCCGAGTCTCGCCGGAAGGTG
CACCGCCACGTACGAGCCCGGTGATTTCCTCGAGCACCGTGCGGGTGGTG
GCGGCTTCAGAAGCAGCACTGACAGGGGCAGGGGGGAAAACTCCGATCGT
TCTGCTGCTGCGGCTGCCATTGCCGCCGAGTCTCGCCGGAAGGTGCACCG
CCAC
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