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Homology
BLAST of mRNA_L-elsbetiae_contig945.18441.1 vs. uniprot
Match: D7G552_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G552_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 4.890e-9 Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 517 AMKKNGDEFMARVSSAQGGKPLDEETCRVLREMWARREVQAGVPNFGAGGKEGLDNGLFYVTLRRENAP 723
A ++ D+ AR+ Q G+ L +ETC +L +MW + E++ G +FG G + G+DNGLFY L R+NAP
Sbjct: 15 ANEERRDDVRARILRCQHGQALAKETCDILVDMWHKGELKDGTDSFGDGSR-GIDNGLFYGFLSRDNAP 82
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 732 |
| Cds size | 711 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817012.7580502-CDS-L-elsbetiae_contig945:20045..20276 | 1622817012.7580502-CDS-L-elsbetiae_contig945:20045..20276 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig945 20046..20276 - |
| 1691683982.36948-CDS-L-elsbetiae_contig945:20045..20276 | 1691683982.36948-CDS-L-elsbetiae_contig945:20045..20276 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig945 20046..20276 - |
| 1622817012.776142-CDS-L-elsbetiae_contig945:20412..20714 | 1622817012.776142-CDS-L-elsbetiae_contig945:20412..20714 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig945 20413..20714 - |
| 1691683982.3832154-CDS-L-elsbetiae_contig945:20412..20714 | 1691683982.3832154-CDS-L-elsbetiae_contig945:20412..20714 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig945 20413..20714 - |
| 1622817012.7873383-CDS-L-elsbetiae_contig945:20939..21053 | 1622817012.7873383-CDS-L-elsbetiae_contig945:20939..21053 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig945 20940..21053 - |
| 1691683982.3927176-CDS-L-elsbetiae_contig945:20939..21053 | 1691683982.3927176-CDS-L-elsbetiae_contig945:20939..21053 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig945 20940..21053 - |
| 1622817012.8011184-CDS-L-elsbetiae_contig945:21268..21332 | 1622817012.8011184-CDS-L-elsbetiae_contig945:21268..21332 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig945 21269..21332 - |
| 1691683982.4039187-CDS-L-elsbetiae_contig945:21268..21332 | 1691683982.4039187-CDS-L-elsbetiae_contig945:21268..21332 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig945 21269..21332 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817012.81455-UTR-L-elsbetiae_contig945:21332..21353 | 1622817012.81455-UTR-L-elsbetiae_contig945:21332..21353 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig945 21333..21353 - |
| 1691683982.4158072-UTR-L-elsbetiae_contig945:21332..21353 | 1691683982.4158072-UTR-L-elsbetiae_contig945:21332..21353 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig945 21333..21353 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig945.18441.1 >prot_L-elsbetiae_contig945.18441.1 ID=prot_L-elsbetiae_contig945.18441.1|Name=mRNA_L-elsbetiae_contig945.18441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=237bp
MGSRVPENGGEWSAGGKRARHEITISANSSEVPSAGQGPAVSCHWHTALP
DPAAVGLAAAPKALLPSPLGIPPLLPGTVRMGLGTLQKGLVQPGLQPLGP
LAFSFLAGLCPPALLPGLLPPARQPASEATGSGGRADLRSEERKKKMREA
AQRQTLRRQKERKEKAMKKNGDEFMARVSSAQGGKPLDEETCRVLREMWA
RREVQAGVPNFGAGGKEGLDNGLFYVTLRRENAPAAG back to topmRNA from alignment at L-elsbetiae_contig945:20046..21353- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig945.18441.1 ID=mRNA_L-elsbetiae_contig945.18441.1|Name=mRNA_L-elsbetiae_contig945.18441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig945:20046..21353- (Laminarionema elsbetiae ELsaHSoW15)
GGAGAGCAGAGAGCAGAGAAGATGGGGAGTCGTGTGCCGGAGAATGGTGG
GGAGTGGAGTGCTGGAGGGAAGAGGGCTAGACATGGTGAGATAAGCAAAA
GCAAAGTGATGTGCCTAAAGTCTTCAGAAGCATCTCCCACCTGCCGTGTA
TCGTGCATGTGTACGATGCTCTCAAGATTGTGGATGATGGATGACCGATG
CTCCCGACATGAAATAACCCCAGCCTTTGTCAAATCGCATCTCGCACGGT
GCTGTGTATGTGCCATGTTGACTCACACCGGTGCTATTTTTGTGACACAG
AAATCACCATATCGGCAAACTCGTCCGAAGTTCCTTCTGCTGGACAGGGA
CCCGCTGTTTCTTGCCATTGGCATACTGCCCTTCCTGACCCGGCCGCCGT
TGGTCTTGCTGCCGGTGAGAAGACTTAGTTTTAAGGTGACATCTGAAGCA
GTGGTAAATTGTGTTGACCAGTCAGCTCCCTGTTACCATTTGGCCGAATG
AAAATTGGATGTGTGCCCGTGTGTCGGTGTGAGAGGAGAGAATGAGGAAC
AGATTCCATGTGTGTGACACACACACCTGACACCATTTTTTCAACTTCCC
GATGATGCTCTCTTCCCCATGTAACCCACCGCCTTCAAGCGCCAAAAGCC
CTTCTACCGAGTCCGCTTGGAATTCCACCCCTGCTGCCTGGCACCGTGCG
GATGGGGCTTGGCACATTGCAGAAGGGGCTTGTCCAACCTGGACTACAAC
CTCTTGGCCCTTTGGCCTTTTCGTTTCTGGCGGGGCTTTGTCCACCTGCG
CTACTGCCTGGACTACTGCCGCCTGCTAGACAACCGGCTTCTGAAGCAAC
GGGCTCGGGTGGAAGGGCAGACCTCAGATCGGAAGAACGAAAGAAGAAGA
TGCGCGAGGCCGCGCAACGACAGACTCTACGCCGCCAGAAGGTGCGCACA
CGTATACATGTAGTTTGCCACACACTGCACACTTTGGGAGAAAGAGTGAC
TCGGCGCCAGTTTTCTAATCTCTTATATATATATATATATATATATATCC
ACTTTCCTTCGCTCGATCCCATCTCAGGAAAGGAAGGAAAAGGCCATGAA
AAAGAACGGCGATGAGTTTATGGCACGCGTGTCTTCAGCGCAGGGCGGCA
AACCTCTAGACGAGGAGACATGTCGTGTTTTACGGGAGATGTGGGCAAGG
CGGGAAGTTCAGGCCGGCGTCCCCAACTTTGGAGCCGGTGGGAAAGAGGG
GTTGGATAATGGGCTGTTTTACGTGACACTGAGGAGAGAAAATGCGCCTG
CTGCGGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig945:20046..21353- >mRNA_L-elsbetiae_contig945.18441.1 ID=mRNA_L-elsbetiae_contig945.18441.1|Name=mRNA_L-elsbetiae_contig945.18441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1422bp|location=Sequence derived from alignment at L-elsbetiae_contig945:20046..21353- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGAGTCGTGTGCCGGAGAATGGTGGGGAGTGGAGTGCTGGAGGGAA
GAGGGCTAGACATGATGGGGAGTCGTGTGCCGGAGAATGGTGGGGAGTGG
AGTGCTGGAGGGAAGAGGGCTAGACATGAAATCACCATATCGGCAAACTC
GTCCGAAGTTCCTTCTGCTGGACAGGGACCCGCTGTTTCTTGCCATTGGC
ATACTGCCCTTCCTGACCCGGCCGCCGTTGGTCTTGCTGCCGAAATCACC
ATATCGGCAAACTCGTCCGAAGTTCCTTCTGCTGGACAGGGACCCGCTGT
TTCTTGCCATTGGCATACTGCCCTTCCTGACCCGGCCGCCGTTGGTCTTG
CTGCCGCGCCAAAAGCCCTTCTACCGAGTCCGCTTGGAATTCCACCCCTG
CTGCCTGGCACCGTGCGGATGGGGCTTGGCACATTGCAGAAGGGGCTTGT
CCAACCTGGACTACAACCTCTTGGCCCTTTGGCCTTTTCGTTTCTGGCGG
GGCTTTGTCCACCTGCGCTACTGCCTGGACTACTGCCGCCTGCTAGACAA
CCGGCTTCTGAAGCAACGGGCTCGGGTGGAAGGGCAGACCTCAGATCGGA
AGAACGAAAGAAGAAGATGCGCGAGGCCGCGCAACGACAGACTCTACGCC
GCCAGAAGCGCCAAAAGCCCTTCTACCGAGTCCGCTTGGAATTCCACCCC
TGCTGCCTGGCACCGTGCGGATGGGGCTTGGCACATTGCAGAAGGGGCTT
GTCCAACCTGGACTACAACCTCTTGGCCCTTTGGCCTTTTCGTTTCTGGC
GGGGCTTTGTCCACCTGCGCTACTGCCTGGACTACTGCCGCCTGCTAGAC
AACCGGCTTCTGAAGCAACGGGCTCGGGTGGAAGGGCAGACCTCAGATCG
GAAGAACGAAAGAAGAAGATGCGCGAGGCCGCGCAACGACAGACTCTACG
CCGCCAGAAGGAAAGGAAGGAAAAGGCCATGAAAAAGAACGGCGATGAGT
TTATGGCACGCGTGTCTTCAGCGCAGGGCGGCAAACCTCTAGACGAGGAG
ACATGTCGTGTTTTACGGGAGATGTGGGCAAGGCGGGAAGTTCAGGCCGG
CGTCCCCAACTTTGGAGCCGGTGGGAAAGAGGGGTTGGATAATGGGCTGT
TTTACGTGACACTGAGGAGAGAAAATGCGCCTGCTGCGGGGGAAAGGAAG
GAAAAGGCCATGAAAAAGAACGGCGATGAGTTTATGGCACGCGTGTCTTC
AGCGCAGGGCGGCAAACCTCTAGACGAGGAGACATGTCGTGTTTTACGGG
AGATGTGGGCAAGGCGGGAAGTTCAGGCCGGCGTCCCCAACTTTGGAGCC
GGTGGGAAAGAGGGGTTGGATAATGGGCTGTTTTACGTGACACTGAGGAG
AGAAAATGCGCCTGCTGCGGGG back to top
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