mRNA_L-elsbetiae_contig9391.18385.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9391.18385.1
Unique NamemRNA_L-elsbetiae_contig9391.18385.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: D7G547_ECTSI (GYF_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G547_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.920e-16
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    1 MNQEWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLSMAPSLHARVT 183
            M + WYYVD AT  QQGP ++ EL +L+A S +T STL W+DG   WS LS  PSLHA+VT
Sbjct:    1 MAEAWYYVDDATNAQQGPCTIPELERLYASSSVTDSTLFWKDGQADWSALSALPSLHAQVT 61          
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: A0A290XH41_9GAMM (GYF_2 domain-containing protein n=1 Tax=Luteimonas chenhongjianii TaxID=2006110 RepID=A0A290XH41_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 2.380e-7
Identity = 37/86 (43.02%), Postives = 47/86 (54.65%), Query Frame = 1
Query:   13 WYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPL-SMAPSLHAR---VTLAWRAFRSR-STTLAGEGTHDIGGG 255
            WYY+DG   T++GP +   L +L     L  STL WRDGL AW+PL  +A  L+ R   V    R F+SR +   AG   H  GGG
Sbjct:   54 WYYLDGGN-TRRGPITAAALRQLRQRGRLDDSTLPWRDGLPAWTPLRGLAQKLNWRRACVRGRRRTFKSRPAPETAGAALHPAGGG 138          
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: A0A7V8GKR8_9GAMM (Transporter n=1 Tax=Pseudoxanthomonas broegbernensis TaxID=83619 RepID=A0A7V8GKR8_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 7.080e-7
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1
Query:   10 EWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLS 153
            EWYY D   Q QQGP +  EL +LF    +  +TLVWRDGL  W PLS
Sbjct:    3 EWYYADRQRQ-QQGPVAAAELARLFQSGQVDAATLVWRDGLPEWRPLS 49          
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: UPI00167AC23C (GYF domain-containing protein n=1 Tax=Roseibacillus persicicus TaxID=454148 RepID=UPI00167AC23C)

HSP 1 Score: 52.8 bits (125), Expect = 3.430e-6
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 1
Query:   13 WYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLSMAPSLHARV 180
            WY+    TQ  QGP   +++ K  +   L+GSTLVWR+G+  W+PLS  P L++  
Sbjct:    2 WYFESNGTQ--QGPEDSEQIQKRLSNGELSGSTLVWREGMGDWTPLSQVPELNSHT 55          
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: A0A2A3LLB4_9GAMM (Transporter n=1 Tax=Xanthomonadaceae bacterium NML93-0399 TaxID=2032565 RepID=A0A2A3LLB4_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 8.880e-6
Identity = 35/95 (36.84%), Postives = 46/95 (48.42%), Query Frame = 1
Query:   10 EWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPL-----SMAP--SLHARVTLAWRAFRSRSTTLAGEGTHDIGGGIHAATP 273
            +WYY D A   +QGP   + L  L+    + G+TLVW DGL+AW+PL     S+ P  + H   T    A  S + TL      D  G  H A P
Sbjct:    3 DWYYAD-ADNARQGPLPPETLRDLYQRGEVHGATLVWHDGLDAWTPLRDCLQSLTPGAAAHDDATTRATAAASSAQTLT-----DADGRQHIAAP 91          
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: A0A653LZW0_9GAMM (Uncharacterized protein n=1 Tax=Luteimonas sp. 9C TaxID=2653148 RepID=A0A653LZW0_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 9.010e-6
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 1
Query:   10 EWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPL 150
            EWYY D  T T+QGP +   L +L     L   TL+WRDGLEAW+PL
Sbjct:    3 EWYYAD-TTNTRQGPITTPALLQLRQQGTLGDDTLLWRDGLEAWTPL 48          
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: A0A543E6A7_9GAMM (Putative RDD family membrane protein YckC n=2 Tax=unclassified Pseudoxanthomonas TaxID=2645906 RepID=A0A543E6A7_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-5
Identity = 25/51 (49.02%), Postives = 30/51 (58.82%), Query Frame = 1
Query:   13 WYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLSMAPS 165
            WYY D   Q +QGPF+  ELG     + L   +LVWR+GLE W PLS   S
Sbjct:    4 WYYADAQGQ-RQGPFTAGELGGHVRQARLDAQSLVWREGLEDWQPLSTLAS 53          
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: UPI00131B3E10 (DUF4339 domain-containing protein n=1 Tax=Streptomyces sp. NRRL WC-3549 TaxID=1463925 RepID=UPI00131B3E10)

HSP 1 Score: 48.9 bits (115), Expect = 2.350e-5
Identity = 21/54 (38.89%), Postives = 31/54 (57.41%), Query Frame = 1
Query:    7 QEWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLSMAPSL 168
            QE +++ G   TQQGP+    L  L +   LTG+TL+W++G+  W P    P L
Sbjct:   21 QEQWFI-GVNGTQQGPYDRTALAGLVSAGTLTGTTLMWKEGMSGWQPADQVPDL 73          
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: UPI0017862C35 (RDD family protein n=1 Tax=Pseudoxanthomonas sp. PXM01 TaxID=2769295 RepID=UPI0017862C35)

HSP 1 Score: 51.2 bits (121), Expect = 3.030e-5
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1
Query:   10 EWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLS 153
            +WYY D     +QGPFS +EL      + L  ++LVWRDGL+ W PLS
Sbjct:    3 QWYYADAGGH-RQGPFSAEELESHVRHARLHAASLVWRDGLQEWQPLS 49          
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: A0A2W5LD81_9GAMM (Transporter n=3 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A2W5LD81_9GAMM)

HSP 1 Score: 50.8 bits (120), Expect = 4.140e-5
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 1
Query:   10 EWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLS 153
            +WYY D + Q +QGPFS +EL      + L  ++LVWR+GL+ W PLS
Sbjct:    3 QWYYADASGQ-RQGPFSAEELEGHVRHARLGAASLVWREGLQDWQPLS 49          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G547_ECTSI2.920e-1657.38GYF_2 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A290XH41_9GAMM2.380e-743.02GYF_2 domain-containing protein n=1 Tax=Luteimonas... [more]
A0A7V8GKR8_9GAMM7.080e-754.17Transporter n=1 Tax=Pseudoxanthomonas broegbernens... [more]
UPI00167AC23C3.430e-641.07GYF domain-containing protein n=1 Tax=Roseibacillu... [more]
A0A2A3LLB4_9GAMM8.880e-636.84Transporter n=1 Tax=Xanthomonadaceae bacterium NML... [more]
A0A653LZW0_9GAMM9.010e-653.19Uncharacterized protein n=1 Tax=Luteimonas sp. 9C ... [more]
A0A543E6A7_9GAMM2.230e-549.02Putative RDD family membrane protein YckC n=2 Tax=... [more]
UPI00131B3E102.350e-538.89DUF4339 domain-containing protein n=1 Tax=Streptom... [more]
UPI0017862C353.030e-547.92RDD family protein n=1 Tax=Pseudoxanthomonas sp. P... [more]
A0A2W5LD81_9GAMM4.140e-547.92Transporter n=3 Tax=Xanthomonadaceae TaxID=32033 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9391contigL-elsbetiae_contig9391:5378..5695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue5.6e-07
Seed eggNOG ortholog88036.EFJ33544
KEGG koko:K13093
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.Splicing factor U2AF-associated protein
EggNOG OGs37JT2@33090,3GBEP@35493,KOG1548@1,KOG1548@2759
COG Functional cat.A
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons1
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817008.1287785-CDS-L-elsbetiae_contig9391:5377..56951622817008.1287785-CDS-L-elsbetiae_contig9391:5377..5695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9391 5378..5695 -
1691683978.9338455-CDS-L-elsbetiae_contig9391:5377..56951691683978.9338455-CDS-L-elsbetiae_contig9391:5377..5695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9391 5378..5695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9391.18385.1prot_L-elsbetiae_contig9391.18385.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9391 5378..5695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9391.18385.1

>prot_L-elsbetiae_contig9391.18385.1 ID=prot_L-elsbetiae_contig9391.18385.1|Name=mRNA_L-elsbetiae_contig9391.18385.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MNQEWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPL
SMAPSLHARVTLAWRAFRSRSTTLAGEGTHDIGGGIHAATPASGVVVESG
SGEVKP
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mRNA from alignment at L-elsbetiae_contig9391:5378..5695-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9391.18385.1 ID=mRNA_L-elsbetiae_contig9391.18385.1|Name=mRNA_L-elsbetiae_contig9391.18385.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig9391:5378..5695- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCAAGAGTGGTACTACGTTGACGGCGCCACACAAACTCAGCAAGG TCCTTTTTCGGTGGACGAGCTCGGGAAACTGTTCGCGATCTCCGGTCTAA CCGGCTCCACGCTCGTATGGAGAGATGGGCTGGAGGCTTGGTCTCCTCTG TCAATGGCGCCTTCACTGCACGCGCGGGTCACTCTGGCATGGAGGGCCTT CCGATCTCGATCTACAACGTTGGCCGGGGAGGGGACACATGACATTGGTG GAGGGATTCATGCAGCAACGCCGGCCAGTGGAGTTGTTGTTGAGTCAGGG TCAGGTGAGGTGAAACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9391:5378..5695-

>mRNA_L-elsbetiae_contig9391.18385.1 ID=mRNA_L-elsbetiae_contig9391.18385.1|Name=mRNA_L-elsbetiae_contig9391.18385.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig9391:5378..5695- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCAAGAGTGGTACTACGTTGACGGCGCCACACAAACTCAGCAAGG
TCCTTTTTCGGTGGACGAGCTCGGGAAACTGTTCGCGATCTCCGGTCTAA
CCGGCTCCACGCTCGTATGGAGAGATGGGCTGGAGGCTTGGTCTCCTCTG
TCAATGGCGCCTTCACTGCACGCGCGGGTCACTCTGGCATGGAGGGCCTT
CCGATCTCGATCTACAACGTTGGCCGGGGAGGGGACACATGACATTGGTG
GAGGGATTCATGCAGCAACGCCGGCCAGTGGAGTTGTTGTTGAGTCAGGG
TCAGGTGAGGTGAAACCGATGAATCAAGAGTGGTACTACGTTGACGGCGC
CACACAAACTCAGCAAGGTCCTTTTTCGGTGGACGAGCTCGGGAAACTGT
TCGCGATCTCCGGTCTAACCGGCTCCACGCTCGTATGGAGAGATGGGCTG
GAGGCTTGGTCTCCTCTGTCAATGGCGCCTTCACTGCACGCGCGGGTCAC
TCTGGCATGGAGGGCCTTCCGATCTCGATCTACAACGTTGGCCGGGGAGG
GGACACATGACATTGGTGGAGGGATTCATGCAGCAACGCCGGCCAGTGGA
GTTGTTGTTGAGTCAGGGTCAGGTGAGGTGAAACCG
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