mRNA_L-elsbetiae_contig9391.18385.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: D7G547_ECTSI (GYF_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G547_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 2.920e-16 Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1 Query: 1 MNQEWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLSMAPSLHARVT 183 M + WYYVD AT QQGP ++ EL +L+A S +T STL W+DG WS LS PSLHA+VT Sbjct: 1 MAEAWYYVDDATNAQQGPCTIPELERLYASSSVTDSTLFWKDGQADWSALSALPSLHAQVT 61
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: A0A290XH41_9GAMM (GYF_2 domain-containing protein n=1 Tax=Luteimonas chenhongjianii TaxID=2006110 RepID=A0A290XH41_9GAMM) HSP 1 Score: 55.8 bits (133), Expect = 2.380e-7 Identity = 37/86 (43.02%), Postives = 47/86 (54.65%), Query Frame = 1 Query: 13 WYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPL-SMAPSLHAR---VTLAWRAFRSR-STTLAGEGTHDIGGG 255 WYY+DG T++GP + L +L L STL WRDGL AW+PL +A L+ R V R F+SR + AG H GGG Sbjct: 54 WYYLDGGN-TRRGPITAAALRQLRQRGRLDDSTLPWRDGLPAWTPLRGLAQKLNWRRACVRGRRRTFKSRPAPETAGAALHPAGGG 138
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: A0A7V8GKR8_9GAMM (Transporter n=1 Tax=Pseudoxanthomonas broegbernensis TaxID=83619 RepID=A0A7V8GKR8_9GAMM) HSP 1 Score: 55.8 bits (133), Expect = 7.080e-7 Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1 Query: 10 EWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLS 153 EWYY D Q QQGP + EL +LF + +TLVWRDGL W PLS Sbjct: 3 EWYYADRQRQ-QQGPVAAAELARLFQSGQVDAATLVWRDGLPEWRPLS 49
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: UPI00167AC23C (GYF domain-containing protein n=1 Tax=Roseibacillus persicicus TaxID=454148 RepID=UPI00167AC23C) HSP 1 Score: 52.8 bits (125), Expect = 3.430e-6 Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 1 Query: 13 WYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLSMAPSLHARV 180 WY+ TQ QGP +++ K + L+GSTLVWR+G+ W+PLS P L++ Sbjct: 2 WYFESNGTQ--QGPEDSEQIQKRLSNGELSGSTLVWREGMGDWTPLSQVPELNSHT 55
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: A0A2A3LLB4_9GAMM (Transporter n=1 Tax=Xanthomonadaceae bacterium NML93-0399 TaxID=2032565 RepID=A0A2A3LLB4_9GAMM) HSP 1 Score: 52.8 bits (125), Expect = 8.880e-6 Identity = 35/95 (36.84%), Postives = 46/95 (48.42%), Query Frame = 1 Query: 10 EWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPL-----SMAP--SLHARVTLAWRAFRSRSTTLAGEGTHDIGGGIHAATP 273 +WYY D A +QGP + L L+ + G+TLVW DGL+AW+PL S+ P + H T A S + TL D G H A P Sbjct: 3 DWYYAD-ADNARQGPLPPETLRDLYQRGEVHGATLVWHDGLDAWTPLRDCLQSLTPGAAAHDDATTRATAAASSAQTLT-----DADGRQHIAAP 91
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: A0A653LZW0_9GAMM (Uncharacterized protein n=1 Tax=Luteimonas sp. 9C TaxID=2653148 RepID=A0A653LZW0_9GAMM) HSP 1 Score: 52.8 bits (125), Expect = 9.010e-6 Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 1 Query: 10 EWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPL 150 EWYY D T T+QGP + L +L L TL+WRDGLEAW+PL Sbjct: 3 EWYYAD-TTNTRQGPITTPALLQLRQQGTLGDDTLLWRDGLEAWTPL 48
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: A0A543E6A7_9GAMM (Putative RDD family membrane protein YckC n=2 Tax=unclassified Pseudoxanthomonas TaxID=2645906 RepID=A0A543E6A7_9GAMM) HSP 1 Score: 51.6 bits (122), Expect = 2.230e-5 Identity = 25/51 (49.02%), Postives = 30/51 (58.82%), Query Frame = 1 Query: 13 WYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLSMAPS 165 WYY D Q +QGPF+ ELG + L +LVWR+GLE W PLS S Sbjct: 4 WYYADAQGQ-RQGPFTAGELGGHVRQARLDAQSLVWREGLEDWQPLSTLAS 53
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: UPI00131B3E10 (DUF4339 domain-containing protein n=1 Tax=Streptomyces sp. NRRL WC-3549 TaxID=1463925 RepID=UPI00131B3E10) HSP 1 Score: 48.9 bits (115), Expect = 2.350e-5 Identity = 21/54 (38.89%), Postives = 31/54 (57.41%), Query Frame = 1 Query: 7 QEWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLSMAPSL 168 QE +++ G TQQGP+ L L + LTG+TL+W++G+ W P P L Sbjct: 21 QEQWFI-GVNGTQQGPYDRTALAGLVSAGTLTGTTLMWKEGMSGWQPADQVPDL 73
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: UPI0017862C35 (RDD family protein n=1 Tax=Pseudoxanthomonas sp. PXM01 TaxID=2769295 RepID=UPI0017862C35) HSP 1 Score: 51.2 bits (121), Expect = 3.030e-5 Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 Query: 10 EWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLS 153 +WYY D +QGPFS +EL + L ++LVWRDGL+ W PLS Sbjct: 3 QWYYADAGGH-RQGPFSAEELESHVRHARLHAASLVWRDGLQEWQPLS 49
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Match: A0A2W5LD81_9GAMM (Transporter n=3 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A2W5LD81_9GAMM) HSP 1 Score: 50.8 bits (120), Expect = 4.140e-5 Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 1 Query: 10 EWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLS 153 +WYY D + Q +QGPFS +EL + L ++LVWR+GL+ W PLS Sbjct: 3 QWYYADASGQ-RQGPFSAEELEGHVRHARLGAASLVWREGLQDWQPLS 49 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9391.18385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9391.18385.1 >prot_L-elsbetiae_contig9391.18385.1 ID=prot_L-elsbetiae_contig9391.18385.1|Name=mRNA_L-elsbetiae_contig9391.18385.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp MNQEWYYVDGATQTQQGPFSVDELGKLFAISGLTGSTLVWRDGLEAWSPLback to top mRNA from alignment at L-elsbetiae_contig9391:5378..5695- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9391.18385.1 ID=mRNA_L-elsbetiae_contig9391.18385.1|Name=mRNA_L-elsbetiae_contig9391.18385.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig9391:5378..5695- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9391:5378..5695- >mRNA_L-elsbetiae_contig9391.18385.1 ID=mRNA_L-elsbetiae_contig9391.18385.1|Name=mRNA_L-elsbetiae_contig9391.18385.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig9391:5378..5695- (Laminarionema elsbetiae ELsaHSoW15)back to top |