mRNA_L-elsbetiae_contig939.18383.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig939.18383.1
Unique NamemRNA_L-elsbetiae_contig939.18383.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig939.18383.1 vs. uniprot
Match: D7G0F5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0F5_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 6.200e-51
Identity = 95/128 (74.22%), Postives = 103/128 (80.47%), Query Frame = 2 
Query:  113 AATVLPSILDALTCLDNTARNGAEQAFNGLKDGQPEDLVYGLLEGIGSKHLAPHVRGLAAVLLRRALLVDEPSLWDCLPPAADMGQGHRGIEGRGG-------QRELQACLLQILSDEGDPSVRRKVG 475
            AA ++ S+L ALT  DN+ARN AEQAFN LK  QPE L+YGLLEGIGSKHL PHVRGLAAVLLRRALLV+EP+LWDCLP A+DMG GH   EG GG       QRELQACLLQILSDEGD SVRRKVG
Sbjct:   47 AAPIVVSLLHALTSADNSARNRAEQAFNELKQSQPEALLYGLLEGIGSKHLPPHVRGLAAVLLRRALLVEEPTLWDCLPAASDMGSGHGASEGGGGAEVGKMGQRELQACLLQILSDEGDASVRRKVG 174
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BLAST of mRNA_L-elsbetiae_contig939.18383.1 vs. uniprot
Match: A0A1V9YJA6_9STRA (Importin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJA6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.420e-8
Identity = 46/113 (40.71%), Postives = 61/113 (53.98%), Query Frame = 2 
Query:  134 ILDALTCLDNTARNGAEQAFNGLKDGQPEDLVYGLLEGIGSKHLAPHVRGLAAVLLRRALLVDEPSLWDCLPPAADMGQGHRGIEGRGGQRELQACLLQILSDEGDPSVRRKV 472
            +L +L   DN  RN AE  F G+K      L++ LL+ I S   +  +RGLAAVLLRR LL DE SLW C    A              Q  ++  LLQ+L+ E +PS+RRK+
Sbjct:    9 MLWSLMSPDNAERNQAESMFEGMKADSDGTLLH-LLQVIRSP-ASDDLRGLAAVLLRRVLLRDEVSLW-CNATNAT-------------QHSVKNDLLQVLTHEANPSIRRKL 105
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BLAST of mRNA_L-elsbetiae_contig939.18383.1 vs. uniprot
Match: A0A3M7L2Y6_AUXPR (TOG domain-containing protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7L2Y6_AUXPR)

HSP 1 Score: 58.5 bits (140), Expect = 5.160e-7
Identity = 41/111 (36.94%), Postives = 57/111 (51.35%), Query Frame = 2 
Query:  131 SILDALTCLDNTARNGAEQAFNGLKDGQPEDLVYGLLEGIGSKHLAPHVRGLAAVLLRRALLVDEPSLWDCLPPAADM----GQGHRGIEGRGGQRELQACLLQILSDEGD 451
            ++L  L   +N  R+ AEQAF  LK   P+  V GL++G+ S    P  R L AVLLR+ L+ DEPSLW  L PA+ +     +   G+    G  EL   + Q +    D
Sbjct:   37 ALLQGLLSSENEVRSQAEQAFTELKK-YPDTCVPGLVQGLRSNP-DPASRSLCAVLLRKVLVRDEPSLWTGLSPASKVCDLVSELAAGVLEESGWPELLPFMFQCIQSGED 145
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig939.18383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0F5_ECTSI6.200e-5174.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1V9YJA6_9STRA4.420e-840.71Importin-like protein n=1 Tax=Achlya hypogyna TaxI... [more]
A0A3M7L2Y6_AUXPR5.160e-736.94TOG domain-containing protein n=3 Tax=Auxenochlore... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig939contigL-elsbetiae_contig939:3010..7424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue2.8e-44
Seed eggNOG ortholog2880.D7G0F5
Preferred nameIPO5
KEGG koko:K20222
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000060,GO:0001101,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042221,GO:0042277,GO:0042306,GO:0042307,GO:0042886,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046822,GO:0046824,GO:0046907,GO:0048518,GO:0050789,GO:0050896,GO:0051049,GO:0051050,GO:0051169,GO:0051170,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0070887,GO:0071229,GO:0071230,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0072594,GO:0090087,GO:0090316,GO:1900180,GO:1900182,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904951
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size478
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig939.18383.1prot_L-elsbetiae_contig939.18383.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig939 3010..7393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817008.0248907-CDS-L-elsbetiae_contig939:3009..32431622817008.0248907-CDS-L-elsbetiae_contig939:3009..3243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig939 3010..3243 -
1691683978.8684273-CDS-L-elsbetiae_contig939:3009..32431691683978.8684273-CDS-L-elsbetiae_contig939:3009..3243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig939 3010..3243 -
1622817008.037996-CDS-L-elsbetiae_contig939:7180..73931622817008.037996-CDS-L-elsbetiae_contig939:7180..7393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig939 7181..7393 -
1691683978.8816032-CDS-L-elsbetiae_contig939:7180..73931691683978.8816032-CDS-L-elsbetiae_contig939:7180..7393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig939 7181..7393 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817008.050551-UTR-L-elsbetiae_contig939:7393..74241622817008.050551-UTR-L-elsbetiae_contig939:7393..7424Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig939 7394..7424 -
1691683978.8939342-UTR-L-elsbetiae_contig939:7393..74241691683978.8939342-UTR-L-elsbetiae_contig939:7393..7424Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig939 7394..7424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig939.18383.1

>prot_L-elsbetiae_contig939.18383.1 ID=prot_L-elsbetiae_contig939.18383.1|Name=mRNA_L-elsbetiae_contig939.18383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
MTSPSPMGDASDQEPNGQNQEVAKQATAATVLPSILDALTCLDNTARNGA
EQAFNGLKDGQPEDLVYGLLEGIGSKHLAPHVRGLAAVLLRRALLVDEPS
LWDCLPPAADMGQGHRGIEGRGGQRELQACLLQILSDEGDPSVRRKVG*
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mRNA from alignment at L-elsbetiae_contig939:3010..7424-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig939.18383.1 ID=mRNA_L-elsbetiae_contig939.18383.1|Name=mRNA_L-elsbetiae_contig939.18383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4415bp|location=Sequence derived from alignment at L-elsbetiae_contig939:3010..7424- (Laminarionema elsbetiae ELsaHSoW15)
CACGAGCCAGTGGAGAGAGCAAAGAGCAGAGATGACGTCTCCTAGCCCGA
TGGGGGACGCCTCAGACCAAGAGCCAAACGGACAAAATCAAGAAGTAGCG
AAGCAGGCAACAGCAGCAACGGTGTTACCCTCGATCCTCGACGCCCTCAC
CTGCCTCGATAACACGGCCCGCAACGGTGCAGAGCAGGCGTTCAACGGGC
TCAAGGACGGCCAGCCGGAAGATCTCGTGTATGGCCTGCTGGAGGTCAGT
GCGAGCCCTCTGTCTTGGGGGTTTTGCTTTCAAGAGTATGGCACTGCGCA
GTAAAATGTTGGATCGTTCCACATACGTATTTTGTTCCCGCACACACACA
CGGCGCGCGATCCTCGAAGGCCACTCAAATTGGGGTCACCCGCGCGCCGT
GTGGACTTTTTTGTGGGGGTCGGTCGGATAGGGGCAGCCAGTGGTTGCCG
TCGTGCCCTCGCCAAGCGTCAGGGGCGTGCATGTGCTTGCGTGTGTTTGC
CTTGCCGTTTTAGCTGCATCGTTTCACGTGCGTTTCTCACCGACAGCGAT
TCTCGCTCTCTCATGCTCTCCTGGAAAAAAAAAAAAAAAACCGCCCTTCA
AATCCGTTGGAGTTGAGGAAGCGCCGTTACCCCTCCCCACCCAAGNNNNN
NNNNGCCTTGCCGTTTTAGCTGCATCGTTTCACGTGCGTTTCTCACCGAC
AGCAATTCTCGCTCTCTCATGCTCAACAAAAAAAAAAAAAAAAAACAGCA
CTCCAAATATGTTGAAGTTAAGTAACAGCAGTTACCGTTCTCCACCCAAG
CATCGCGCAAGGAGGGCAGCTCTTCTTTAACGGCTCGATGTGCGTGTGGA
GCTCGCGACTCTGTACAGCCGGTGTGACCTATTTCCTGTGGCCGAAGGCA
ATTTCCTCAATTCGTACATAGGTATCATTTATTTTCGTAGATGGATATGC
ACCGCTCGACTACCGTAGGTGACACAAGATACCACACCCCCTGGACGATT
TTCAAAGCTCGATTTCTCCGTAACGGAGAGGGTGTCAGCCCCAAACGACA
CATCTTCGGACAGCCCTCGACCAGATCTTTCCAACGCCACCCCCTTTCGG
CACTGGCACTCTTCTTGCTAGGGAGGAATCGAGCTTTGAAAATCTGTTCA
GGGGATGTGGTGCCTTGCGTCACCTACGGTACTGCCGTCTAGGCAGGAGT
ACACATATACATGTACCATCGGAGGTTGGGTTTCACACTGATGATAAAAA
TGGTACTATTTATCGTACTGCCAACACGATGATTTACAGATGACACTCAG
ATCCAGAAGGCACACACGTGACCGACCCAACCCACGCAACCCCAACCCCA
ACCCTAACCCTAACCCTAACCCGCCGCGAACGCGGTGTGTAACCAGTACT
GCACCATCGACAGCGAGTTTGCTGTGTTTGTGCATAGGATACATATGTAG
ACGGCGGTTGCGAACACGGTCGCCGGGGATGCTCGGGTGCTCTGAGGTGT
AGGCCGGCCTGGCCCTGTTTGAACACGTCAACCCGCATGCATCATGTGCC
GGATTTTACAAGGCTGTTCGGCTGGATGTGTTTCTACATCATCGCACACT
AGTAGTAGTAGTGTACACAAGTGCAAACCCCTTCTCTCCTGCCCCTCTCC
CGCCCCGGAAGAGAGCGAGTGATCCCTATCTACGCGGAGAAAAGGGACCA
CCAAATAGCACAGCAGTAGCAGCAGGGTGCAGTAGCTTTGACGAAAACGT
GGAGCCTTTTGAAAAGCGGTTTATATTATCCAGGTAGGGGTATGTATTGA
ATCGTGGTGCATAAACGACCGAACCCTTCTCGCGGCGGTGGTGGCACCAG
ACGTCTCTTAGCGATTTCGCCCCACGAGGCACATGGCTATAAGTGGGGTT
ATTCTTGCAGAGAGAGGCCCCCGTGCTCCCCTCTGGCTACCAGACAGTAG
TAAGAACTATCAGTACACTAACCTACCCTATCCATAACATACTTTGAAGT
CTTCGACCTCACCGTCGACAAGGGAAAGGGATGGCTGAACCCTTCTCGCG
ACGAAAGTTTTATGGAAGAACCGCAGACGGGGGGAGTGGGGGCCTTGAGA
AAAGAACCCTTCTGTGTGACCACGGTTCAGTACCTTGGCAAGTTGTCCTC
GTGACCAGGGAGCCCATCGAGCACTGGAAATAAAGGTGAAAAAGAAAAAA
AGAAAAAAAGAAATATTTTACACAGCGCTGGGTTCAGCACAAACCACGTT
CAACAAATCAATATCATACTTCGGTATGTATGATATGACATCTATGTAGC
ACAGCGCGTCTCTCGCATGAAAGTTAGCGAAAAGCGCCGATTACCGCGTA
CGGCCGTGCAGCAGAGGACCCCCGTCTCTCCGGAGACGGTTCCCTGTCTC
CACTCCGTACCCGGCGGCGGTCTTTCGAAGCCTTCCTTGCAAACCATCGC
GAGTTGAGCTGTTTGTTTTCCAAACTCGCGAGAACAAAGGGCGGGATACC
TCGACCACCTTGAGAGAGGTAAGAAAGGGTGCACCGCGATCTCAACTCTC
GAAAGAGAGCCGCGCCAGACGAAACCCCAGCACACCAACAGACACCGCCT
TCGGCTCTGCCGCGCCCCTTTCCCGCGTCCCCCTCACCCCGCCCATCCCC
CAACCCCCCCCCCCCGGCCCCATTTTGCGCGGCTGGGGGGCGGGGGGGGG
CGGGGGGGGGGGGGGGGGTTGCATGCGGGTTTTGCGCGCGTGCGGTAGAA
CTCCGTGCCGGATCTCGGTCACGTTGATGCGCACATATTTTTTGCCTTTC
TCGGACGAACTCAGAAAAATCCGAAAATACTGGTGCATACTACATTACGT
ACACACTCAACACAGAGTTATTATTTTCTACGCCGAGTCCAGAACTGGAG
CATTGTTTATATTTGGGCTGCGGCCAGTCTCGTTGACAAAATTTATATCA
ACCACGGAGTATTTACGTAAACGGTACAAACCTATCTTTTTTAGGGTTGA
CAGGAAGGTGGTGACTCCGCAACACCTCTATACTCCTCTGTTTTTCCTCT
CCGGCCAGGCCGCCGATACCATAATTAAATCAGATGGGCAAAACCACAAT
GGTAAAAACAGATCTCACGCGGTTGCTGACACACAAACACGCACGCGCAG
GCACAGGGATCGCGGCTCGCAGGTGCCAGGGCATCTTGCCGGAGTACTAA
ACCCTGAACACACAGAAAGGCTTCTTTTCCCCAAGGCCCCCACTAACTAC
CCCCTCTTCTGCGATGCTTGCCTAACATTTTTGTCGCGAGAAGGATTCAG
CCGTCCCTTTCCCTCGTCGACGGTGAGGTCAAAGTTCGTACAAGCATACT
TGCATACATGCACATGTACAAGTTCCCCTTTTCAGACGTTGCTCATGAAC
GGAACCATTCAGGGGGTGAAGCAAGAGAACAGACCAGGCGTCCGATACCT
GCTTGCTGCACTGCCCGACTATGACCGTTTTCAATTTTAAAACGGTTAAT
GCACCGGGGGGGGGGAGAGAATGTTGCGCTGGCGTGCGCGCGCGTGTGTG
TGTGTTTTGCCATCGTCGGAAATGGCACACAGAGAACAACCAGAAAAGAA
CAGCTGCTATTTATCAAGAACCTGATACTTGCCGACTACAGGTCGGGTTG
CGCCACGCTATTTATGAGGTTGCCGAGCGAGTGGCGTACGTCGCACGTGG
CGTGACATCAGTGCGTGTCGCACTAAAGAGCCAGAACTGGCGTAGGTCGC
CACGTGCGTCGCCAGCTTGAAAAGCCTCCTGAAAAGCCTGGTTCCAGTGC
GTGGCTTGACCGGCACAGCCCGCAGACCCTGCACCCCCAGGGAAAACCGA
ATCCATCTAAAAGTCATGCATACACCCTTCTGACGCTCAGTACTTCAAAG
AGCCTAAGTCTCATGCAAAGCCGCGTTTTTTCTGGCGTTTTACATATGTA
GCACTACAGCAGGAAAAACATTAAAATCCTTAACGAGACGCACAGATTAG
ACGACGTCTTCTCTATACATGCGTGCAAACATAACATTCATCGCTGTGGT
GGAAAGAAGAAGCAACTGCTGCCGATCGATGTCTGACGTTCAGGAAAGAG
CGCGCGCACCTCAAAAAACATTATTATTATGTTGTCTCCGGCACGTGCGT
TTTTGTCGGTTCCGCTGCTCTCACACTCCAGGGCATCGGGTCGAAGCACC
TCGCCCCCCACGTGCGAGGTCTGGCGGCCGTTCTGCTGAGGCGAGCCCTC
CTTGTCGACGAGCCGAGCCTGTGGGACTGCCTCCCGCCGGCGGCGGACAT
GGGGCAGGGGCACCGTGGTATCGAAGGGCGGGGCGGGCAGCGGGAGCTGC
AGGCGTGCCTGCTGCAGATACTGTCCGACGAGGGAGACCCGTCCGTGAGG
AGGAAGGTCGGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig939:3010..7424-

>mRNA_L-elsbetiae_contig939.18383.1 ID=mRNA_L-elsbetiae_contig939.18383.1|Name=mRNA_L-elsbetiae_contig939.18383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig939:3010..7424- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGTCTCCTAGCCCGATGGGGGACGCCTCAGACCAAGAGCCAAACGG
ACAAAATCAAGAAGTAGCGAAGCAGGCAACAGCAGCAACGGTGTTACCCT
CGATCCTCGACGCCCTCACCTGCCTCGATAACACGGCCCGCAACGGTGCA
GAGCAGGCGTTCAACGGGCTCAAGGACGGCCAGCCGGAAGATCTCGTGTA
TGGCCTGCTGGAGATGACGTCTCCTAGCCCGATGGGGGACGCCTCAGACC
AAGAGCCAAACGGACAAAATCAAGAAGTAGCGAAGCAGGCAACAGCAGCA
ACGGTGTTACCCTCGATCCTCGACGCCCTCACCTGCCTCGATAACACGGC
CCGCAACGGTGCAGAGCAGGCGTTCAACGGGCTCAAGGACGGCCAGCCGG
AAGATCTCGTGTATGGCCTGCTGGAGGGCATCGGGTCGAAGCACCTCGCC
CCCCACGTGCGAGGTCTGGCGGCCGTTCTGCTGAGGCGAGCCCTCCTTGT
CGACGAGCCGAGCCTGTGGGACTGCCTCCCGCCGGCGGCGGACATGGGGC
AGGGGCACCGTGGTATCGAAGGGCGGGGCGGGCAGCGGGAGCTGCAGGCG
TGCCTGCTGCAGATACTGTCCGACGAGGGAGACCCGTCCGTGAGGAGGAA
GGTCGGTTGAGGCATCGGGTCGAAGCACCTCGCCCCCCACGTGCGAGGTC
TGGCGGCCGTTCTGCTGAGGCGAGCCCTCCTTGTCGACGAGCCGAGCCTG
TGGGACTGCCTCCCGCCGGCGGCGGACATGGGGCAGGGGCACCGTGGTAT
CGAAGGGCGGGGCGGGCAGCGGGAGCTGCAGGCGTGCCTGCTGCAGATAC
TGTCCGACGAGGGAGACCCGTCCGTGAGGAGGAAGGTCGGTTGA
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