mRNA_L-elsbetiae_contig9349.18347.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: D7G5S1_ECTSI (Putaive LSm10 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S1_ECTSI) HSP 1 Score: 191 bits (485), Expect = 3.940e-60 Identity = 104/144 (72.22%), Postives = 117/144 (81.25%), Query Frame = 1 Query: 1 RSGGRPRTTKKKTQPLERTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKIL--GKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQMLKPKPSRAPP 426 R+G RP+ +KKT PLE+TLAILIQSMRG K+VVE+KND EISGILEETDR+MK LA L + G LSMVDVRQTNPDGSV+KM+VVLVQG+MIRYVHIPD+VDAI NLQ HMRTMDQQGY R MLKPK S+APP Sbjct: 4 RAGNRPQPRQKKTSPLEKTLAILIQSMRGNKIVVEMKNDAEISGILEETDRNMKAATVWLAAYGLTCSRAGPAPSLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQGYHRNMLKPKLSQAPP 147
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A6H5JYY5_9PHAE (Sm domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY5_9PHAE) HSP 1 Score: 139 bits (351), Expect = 1.540e-40 Identity = 75/107 (70.09%), Postives = 83/107 (77.57%), Query Frame = 1 Query: 106 LKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQMLKPKPSRAPP 426 +KND EISGILEETDR+M +LSMVDVRQTNPDGSV+KM+VVLVQG+MIRYVHIPD+VDAI NLQ HMRTMDQQGYRR MLKPK S+APP Sbjct: 1 MKNDAEISGILEETDRNM-------------------NLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQGYRRNMLKPKTSQAPP 88
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A5D6XV54_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV54_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 3.790e-11 Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = 1 Query: 52 RTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQ 375 R+L +L++S+ G +V V+LKND + G++ E M D +MVD +T P+G++ +M+ V V GR I YVHIPD ++ ++LQ + R + Q Sbjct: 42 RSLLLLLKSLVGLRVRVDLKNDATVEGVVAEVVHDM-------------------DFTMVDACETKPNGAMVRMDEVFVMGRTILYVHIPDRINLTQHLQQYTRMVRQ 130
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A1V9ZKH8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKH8_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.840e-10 Identity = 41/120 (34.17%), Postives = 63/120 (52.50%), Query Frame = 1 Query: 52 RTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQD--HMRTMDQQGYRRQMLKP 405 RTL I++QSM G +V +ELK + + G +EE M D+ + VRQ P G V + + + V G+MI YVHIPD V+ +++D HM +++ Y+R + KP Sbjct: 8 RTLLIVLQSMLGMEVTIELKTEHVLVGTVEEVTEGM-------------------DVRLSHVRQVGPSGRVLEFDELYVMGKMILYVHIPDRVNINAHMKDYVHMVERNKKMYKRAVRKP 108
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: W4H8K5_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8K5_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 8.140e-10 Identity = 37/124 (29.84%), Postives = 65/124 (52.42%), Query Frame = 1 Query: 52 RTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQMLKPKPSRAP 423 R++ +L+QSM G V +ELK + + G +EE D R + +V+QT+P G++ ++ V V G+MI +VH+PD ++ +L+D+M+ +D+ Q KP+ P Sbjct: 6 RSVVVLLQSMLGMDVKIELKTEYVLEGRVEEVGEGNMDVR------------------LTNVKQTSPQGAIVHLDEVFVMGKMILFVHLPDRLNVAVHLRDYMQMVDKNRSMYQRSTRKPATTP 111
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A8K1CIL4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIL4_PYTOL) HSP 1 Score: 62.4 bits (150), Expect = 1.040e-9 Identity = 36/116 (31.03%), Postives = 63/116 (54.31%), Query Frame = 1 Query: 28 KKKTQPLERTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQ 375 KK+ +P R+L +L++S+ G +V ++LKND + GI+EE M D +++D +T P+G ++ V V G+ + YVHIPD ++ ++LQ + R + Q Sbjct: 14 KKRRRP--RSLLLLLKSLAGLRVRIDLKNDCVVEGIVEEVLHDM-------------------DFTLLDACETKPNGRTVRLEEVFVMGKTVLYVHIPDRINISQHLQQYNRMIRQ 108
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A024UUS1_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUS1_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.610e-9 Identity = 37/120 (30.83%), Postives = 63/120 (52.50%), Query Frame = 1 Query: 52 RTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQG--YRRQMLKP 405 R++ +L+QSM G V +ELK + + G +EE D R + V+QT+P G++ ++ V V G+MI +VH+PD ++ +L+D+M +D+ Y+R KP Sbjct: 6 RSVVLLLQSMLGMDVKIELKTEYTLEGRVEEVGEGNMDVR------------------LTGVKQTSPQGAIVHLDEVFVMGKMILFVHLPDRLNVAAHLRDYMHLVDKNKNLYQRSTRKP 107
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: T1IY48_STRMM (Sm domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IY48_STRMM) HSP 1 Score: 61.6 bits (148), Expect = 2.340e-9 Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 1 Query: 55 TLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVD 333 TL L++S+ K +ELKN++ ++G +E D M ++ M DV P+GS+KK +QGR +RYVHIPD+VD Sbjct: 12 TLVCLVKSLEKKATTIELKNESSVTGNIESVDAYM-------------------NVQMNDVVFLAPNGSLKKFQTFFIQGRQVRYVHIPDDVD 85
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A1Y1HWH1_KLENI (Sm domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWH1_KLENI) HSP 1 Score: 61.2 bits (147), Expect = 3.020e-9 Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 1 Query: 28 KKKTQPLERTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDA 336 KKK + ER+L +IQ++ G KV+VELKND + G+LEE D M ++ + D Q N G ++ ++ +QGR IR++HIP V+ Sbjct: 3 KKKGRASERSLICVIQALVGMKVLVELKNDVTVKGVLEECDLGM-------------------NIVIKDAIQENLQGIKTELALMFIQGRRIRFIHIPKSVNV 86
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: UPI0003F08E1D (uncharacterized protein LOC100367675 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08E1D) HSP 1 Score: 62.8 bits (151), Expect = 7.110e-9 Identity = 34/117 (29.06%), Postives = 63/117 (53.85%), Query Frame = 1 Query: 49 ERTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQML 399 E TL L+Q++ GK V+EL+N++ ++G+++ D M ++ M DV N DG V ++ VQG+MIR+V IPDEV+ + ++ + + ++ R++ + Sbjct: 29 ENTLICLLQALTGKSTVIELRNESTVTGVIDSVDAYM-------------------NVFMSDVEFVNADGQVMILSNFFVQGKMIRFVQIPDEVNIVTAIKSQLSSWQERRTRKERV 126 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9349.18347.1 >prot_L-elsbetiae_contig9349.18347.1 ID=prot_L-elsbetiae_contig9349.18347.1|Name=mRNA_L-elsbetiae_contig9349.18347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp RSGGRPRTTKKKTQPLERTLAILIQSMRGKKVVVELKNDTEISGILEETDback to top mRNA from alignment at L-elsbetiae_contig9349:3534..6032- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9349.18347.1 ID=mRNA_L-elsbetiae_contig9349.18347.1|Name=mRNA_L-elsbetiae_contig9349.18347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2499bp|location=Sequence derived from alignment at L-elsbetiae_contig9349:3534..6032- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9349:3534..6032- >mRNA_L-elsbetiae_contig9349.18347.1 ID=mRNA_L-elsbetiae_contig9349.18347.1|Name=mRNA_L-elsbetiae_contig9349.18347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig9349:3534..6032- (Laminarionema elsbetiae ELsaHSoW15)back to top |