prot_L-elsbetiae_contig9349.18347.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9349.18347.1
Unique Nameprot_L-elsbetiae_contig9349.18347.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length143
Homology
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: D7G5S1_ECTSI (Putaive LSm10 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S1_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 3.940e-60
Identity = 104/144 (72.22%), Postives = 117/144 (81.25%), Query Frame = 0
Query:    1 RSGGRPRTTKKKTQPLERTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKIL--GKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQMLKPKPSRAPP 142
            R+G RP+  +KKT PLE+TLAILIQSMRG K+VVE+KND EISGILEETDR+MK     LA   L   + G    LSMVDVRQTNPDGSV+KM+VVLVQG+MIRYVHIPD+VDAI NLQ HMRTMDQQGY R MLKPK S+APP
Sbjct:    4 RAGNRPQPRQKKTSPLEKTLAILIQSMRGNKIVVEMKNDAEISGILEETDRNMKAATVWLAAYGLTCSRAGPAPSLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQGYHRNMLKPKLSQAPP 147          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A6H5JYY5_9PHAE (Sm domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY5_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.540e-40
Identity = 75/107 (70.09%), Postives = 83/107 (77.57%), Query Frame = 0
Query:   36 LKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQMLKPKPSRAPP 142
            +KND EISGILEETDR+M                   +LSMVDVRQTNPDGSV+KM+VVLVQG+MIRYVHIPD+VDAI NLQ HMRTMDQQGYRR MLKPK S+APP
Sbjct:    1 MKNDAEISGILEETDRNM-------------------NLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQGYRRNMLKPKTSQAPP 88          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A5D6XV54_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV54_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.790e-11
Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = 0
Query:   18 RTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQ 125
            R+L +L++S+ G +V V+LKND  + G++ E    M                   D +MVD  +T P+G++ +M+ V V GR I YVHIPD ++  ++LQ + R + Q
Sbjct:   42 RSLLLLLKSLVGLRVRVDLKNDATVEGVVAEVVHDM-------------------DFTMVDACETKPNGAMVRMDEVFVMGRTILYVHIPDRINLTQHLQQYTRMVRQ 130          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A1V9ZKH8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKH8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.840e-10
Identity = 41/120 (34.17%), Postives = 63/120 (52.50%), Query Frame = 0
Query:   18 RTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQD--HMRTMDQQGYRRQMLKP 135
            RTL I++QSM G +V +ELK +  + G +EE    M                   D+ +  VRQ  P G V + + + V G+MI YVHIPD V+   +++D  HM   +++ Y+R + KP
Sbjct:    8 RTLLIVLQSMLGMEVTIELKTEHVLVGTVEEVTEGM-------------------DVRLSHVRQVGPSGRVLEFDELYVMGKMILYVHIPDRVNINAHMKDYVHMVERNKKMYKRAVRKP 108          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: W4H8K5_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8K5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 8.140e-10
Identity = 37/124 (29.84%), Postives = 65/124 (52.42%), Query Frame = 0
Query:   18 RTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQMLKPKPSRAP 141
            R++ +L+QSM G  V +ELK +  + G +EE      D R                  + +V+QT+P G++  ++ V V G+MI +VH+PD ++   +L+D+M+ +D+     Q    KP+  P
Sbjct:    6 RSVVVLLQSMLGMDVKIELKTEYVLEGRVEEVGEGNMDVR------------------LTNVKQTSPQGAIVHLDEVFVMGKMILFVHLPDRLNVAVHLRDYMQMVDKNRSMYQRSTRKPATTP 111          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A8K1CIL4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIL4_PYTOL)

HSP 1 Score: 62.4 bits (150), Expect = 1.040e-9
Identity = 36/116 (31.03%), Postives = 63/116 (54.31%), Query Frame = 0
Query:   10 KKKTQPLERTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQ 125
            KK+ +P  R+L +L++S+ G +V ++LKND  + GI+EE    M                   D +++D  +T P+G   ++  V V G+ + YVHIPD ++  ++LQ + R + Q
Sbjct:   14 KKRRRP--RSLLLLLKSLAGLRVRIDLKNDCVVEGIVEEVLHDM-------------------DFTLLDACETKPNGRTVRLEEVFVMGKTVLYVHIPDRINISQHLQQYNRMIRQ 108          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A024UUS1_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUS1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.610e-9
Identity = 37/120 (30.83%), Postives = 63/120 (52.50%), Query Frame = 0
Query:   18 RTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQG--YRRQMLKP 135
            R++ +L+QSM G  V +ELK +  + G +EE      D R                  +  V+QT+P G++  ++ V V G+MI +VH+PD ++   +L+D+M  +D+    Y+R   KP
Sbjct:    6 RSVVLLLQSMLGMDVKIELKTEYTLEGRVEEVGEGNMDVR------------------LTGVKQTSPQGAIVHLDEVFVMGKMILFVHLPDRLNVAAHLRDYMHLVDKNKNLYQRSTRKP 107          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: T1IY48_STRMM (Sm domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IY48_STRMM)

HSP 1 Score: 61.6 bits (148), Expect = 2.340e-9
Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 0
Query:   19 TLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVD 111
            TL  L++S+  K   +ELKN++ ++G +E  D  M                   ++ M DV    P+GS+KK     +QGR +RYVHIPD+VD
Sbjct:   12 TLVCLVKSLEKKATTIELKNESSVTGNIESVDAYM-------------------NVQMNDVVFLAPNGSLKKFQTFFIQGRQVRYVHIPDDVD 85          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A1Y1HWH1_KLENI (Sm domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWH1_KLENI)

HSP 1 Score: 61.2 bits (147), Expect = 3.020e-9
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 0
Query:   10 KKKTQPLERTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDA 112
            KKK +  ER+L  +IQ++ G KV+VELKND  + G+LEE D  M                   ++ + D  Q N  G   ++ ++ +QGR IR++HIP  V+ 
Sbjct:    3 KKKGRASERSLICVIQALVGMKVLVELKNDVTVKGVLEECDLGM-------------------NIVIKDAIQENLQGIKTELALMFIQGRRIRFIHIPKSVNV 86          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: UPI0003F08E1D (uncharacterized protein LOC100367675 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08E1D)

HSP 1 Score: 62.8 bits (151), Expect = 7.110e-9
Identity = 34/117 (29.06%), Postives = 63/117 (53.85%), Query Frame = 0
Query:   17 ERTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQML 133
            E TL  L+Q++ GK  V+EL+N++ ++G+++  D  M                   ++ M DV   N DG V  ++   VQG+MIR+V IPDEV+ +  ++  + +  ++  R++ +
Sbjct:   29 ENTLICLLQALTGKSTVIELRNESTVTGVIDSVDAYM-------------------NVFMSDVEFVNADGQVMILSNFFVQGKMIRFVQIPDEVNIVTAIKSQLSSWQERRTRKERV 126          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5S1_ECTSI3.940e-6072.22Putaive LSm10 protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JYY5_9PHAE1.540e-4070.09Sm domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A5D6XV54_9STRA3.790e-1134.26Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A1V9ZKH8_9STRA1.840e-1034.17Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W4H8K5_9STRA8.140e-1029.84Sm domain-containing protein n=1 Tax=Aphanomyces a... [more]
A0A8K1CIL4_PYTOL1.040e-931.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024UUS1_9STRA1.610e-930.83Sm domain-containing protein n=1 Tax=Aphanomyces i... [more]
T1IY48_STRMM2.340e-935.48Sm domain-containing protein n=1 Tax=Strigamia mar... [more]
A0A1Y1HWH1_KLENI3.020e-934.95Sm domain-containing protein n=1 Tax=Klebsormidium... [more]
UPI0003F08E1D7.110e-929.06uncharacterized protein LOC100367675 n=1 Tax=Sacco... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 24..53
e-value: 2.8E-5
score: 23.7
NoneNo IPR availableGENE3D2.30.30.100coord: 70..120
e-value: 1.1E-6
score: 30.1
coord: 14..56
e-value: 7.7E-8
score: 33.8
NoneNo IPR availablePANTHERPTHR21196U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM10coord: 10..53
coord: 74..128
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 24..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9349contigL-elsbetiae_contig9349:3534..6032 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9349.18347.1mRNA_L-elsbetiae_contig9349.18347.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9349 3534..6032 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9349.18347.1 ID=prot_L-elsbetiae_contig9349.18347.1|Name=mRNA_L-elsbetiae_contig9349.18347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
RSGGRPRTTKKKTQPLERTLAILIQSMRGKKVVVELKNDTEISGILEETD
RSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRM
IRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQMLKPKPSRAPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf