mRNA_L-elsbetiae_contig9277.18283.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9277.18283.1
Unique NamemRNA_L-elsbetiae_contig9277.18283.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9277.18283.1 vs. uniprot
Match: D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.500e-21
Identity = 58/116 (50.00%), Postives = 77/116 (66.38%), Query Frame = -1
Query:  180 PRIISSSITAS--AMVNREKREALRGAEEGIFDLLAEDLTSVLWAELLKFPLEHAALRGDRSLAQRLVRAGENMGDALHAATRGGHEEIVKDLLDNGASVASKEASWDGRAPLHHA 521
            PR   S  T S  A+ N + R AL+GAE   FDL +E LT+  WAE+L+FPLE AA +G+ +L Q+L+RAG +MG ALHAA R GH E+V +LL++GA V+ K+    G  PL  A
Sbjct:    3 PRGFFSRHTCSQNALANEQGRRALKGAEGETFDLFSEVLTTHGWAEMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAAVRYGHAEVVTNLLEHGACVSIKDTR--GSTPLQVA 116          
BLAST of mRNA_L-elsbetiae_contig9277.18283.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.240e-16
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = -1
Query:  189 DLLAEDLTSVLWAELLKFPLEHAALRGDRSLAQRLVRAGENMGDALHAATRGGHEEIVKDLLDNGASVASKEASWDGRAPL 431
            D + E LTS   AELL+  LEHAA +G++ LAQRLVRAG  +GDALH A  GGH EIV DLL++ AS+A+ +   DGR PL
Sbjct:    3 DFIFEILTSQQLAELLRALLEHAAAKGNKDLAQRLVRAGAEIGDALHRAVDGGHREIVSDLLESEASLAATD--MDGRTPL 81          
BLAST of mRNA_L-elsbetiae_contig9277.18283.1 vs. uniprot
Match: D8LTQ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ8_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 3.550e-10
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = -1
Query:  216 SAMVNREKREALRGAEEGIFDL--LAEDLTSVLWAELLKFPLEHAALRGDRSLAQRLVRAGENMGDALHAATRGGHEEIVKDLLDNGASVASKE 491
            + +V+ E+R  L G  E I  L  L  +LT+ +W E L+ P E AA  G+  LA  L++AG   G+ + AA R GH  +V +LL +GASVASK+
Sbjct:    5 AVLVSEEQRCMLDGMGEEILQLVSLQNELTAEVWGEWLQVPFERAAAYGEVELATMLLKAGAK-GNGVAAAARNGHRRVVSELLQHGASVASKD 97          
BLAST of mRNA_L-elsbetiae_contig9277.18283.1 vs. uniprot
Match: A0A6H5KTD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD7_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.960e-9
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = -1
Query:  108 VLWAELLKFPLEHAALRGDRSLAQRLVRAGENMGDALHAATRGGHEEIVKDLLDNGASVASKEASWDGRAPLHHAAHRGETKVVQLLLLKGDDKDAIDN 404
            V+W E L+ P E AA  G+  +A  L++AG   G+ + +A R GH  ++ +LL +GASVASK+                  +VV+ LL++G D D+ D+
Sbjct:    2 VVWGEWLQVPFERAAAHGEVHVATVLLKAGAK-GNGVASAARNGHRRVISELLQHGASVASKDR-----------------RVVRTLLIEGADPDSFDS 82          
BLAST of mRNA_L-elsbetiae_contig9277.18283.1 vs. uniprot
Match: UPI001BF9A9A8 (uncharacterized protein n=1 Tax=Lentinula edodes TaxID=5353 RepID=UPI001BF9A9A8)

HSP 1 Score: 57.8 bits (138), Expect = 2.580e-6
Identity = 40/117 (34.19%), Postives = 54/117 (46.15%), Query Frame = -1
Query:  111 ELLKFPLEHAALRGDRSLAQRLVRAGENMGDA------LHAATRGGHEEIVKDLLDNGASVA--------SKEASWD---------GRAPLHHAAHRGETKVVQLLLLKGDDKDAID 392
            E   + L  AA  G++ LA+  +  G+ +         LHAA  GGHE++VK LLD+GA V         S E + D         G  PLH AA  G   V+  LL++G   D  D
Sbjct:   22 EFPNYDLHSAAASGNQGLAEYALARGQPVNSVVDGVLPLHAACAGGHEQVVKLLLDHGADVNAARLPRRYSNEKNRDSSAPIVGTTGSTPLHFAAANGNKNVIITLLMRGAHADRRD 138          
BLAST of mRNA_L-elsbetiae_contig9277.18283.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.670e-6
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = -1
Query:  189 LAEDLTSVLWAELLKFPLEHAALRGDRSLAQRLVRAGENMGDALHAATRGGHEEIVKDLLDNGASVASKEASWDGRAPL 425
            +AE  T   WA  L   + +AA +G   L Q+LV+AG  +G A+HAA   G +++   LL NGAS+     ++DG  PL
Sbjct:    1 MAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLVKAGAEIGVAMHAAALRGDQDVANSLLQNGASIND---TFDGFTPL 76          
BLAST of mRNA_L-elsbetiae_contig9277.18283.1 vs. uniprot
Match: A0A8H5MCG0_9AGAR (Uncharacterized protein n=1 Tax=Gymnopus confluens TaxID=206315 RepID=A0A8H5MCG0_9AGAR)

HSP 1 Score: 56.6 bits (135), Expect = 6.380e-6
Identity = 39/117 (33.33%), Postives = 53/117 (45.30%), Query Frame = -1
Query:  111 ELLKFPLEHAALRGDRSLAQRLVRAGENMGDAL------HAATRGGHEEIVKDLLDNGASV------------ASKEAS-----WDGRAPLHHAAHRGETKVVQLLLLKGDDKDAID 392
            E   + L  AA  G+  L +  +  G+ +   L      HAA  GGH+++VK L+D+GA V             S+EAS       G  PLH AA  G   V+  LLL+G   D  D
Sbjct:   22 EFPNYDLHSAAASGNLGLVEYALARGQPVNSVLDGVLPLHAACSGGHDQVVKLLIDHGADVNAARLPRRYSNEKSREASVPIAGTTGSTPLHFAAAHGNKNVITTLLLRGAHPDRRD 138          
BLAST of mRNA_L-elsbetiae_contig9277.18283.1 vs. uniprot
Match: A0A5C3KTB3_9AGAR (Ankyrin (Fragment) n=1 Tax=Coprinopsis marcescibilis TaxID=230819 RepID=A0A5C3KTB3_9AGAR)

HSP 1 Score: 53.1 bits (126), Expect = 8.030e-6
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = -1
Query:  111 LHAATRGGHEEIVKDLLDNGASV------------ASKEAS-----WDGRAPLHHAAHRGETKVVQLLLLKGDDKDAID 296
            +HAA+ GGH ++VK L+++GA V             +++AS       G  PLH AA  G T+VV LLLL G   D  D
Sbjct:   20 IHAASAGGHPQVVKKLIEHGADVNAPRLPRRYFSDRNRDASAPIVGTSGSTPLHFAAANGNTEVVTLLLLHGAHPDLED 98          
BLAST of mRNA_L-elsbetiae_contig9277.18283.1 vs. uniprot
Match: UPI0015FFBC35 (poly [ADP-ribose] polymerase tankyrase-1-like isoform X2 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0015FFBC35)

HSP 1 Score: 55.5 bits (132), Expect = 8.620e-6
Identity = 42/124 (33.87%), Postives = 65/124 (52.42%), Query Frame = -1
Query:   99 AEEGIFDLLAEDLTSVLWAELLKFPLE--HAALRGDRSLAQR--LVRAGENM---GDALHAATRGGHEEIVKDLLDNGASVASKEASWDGRAPLHHAAHRGETKVVQLLLLKGDDKDAIDNREH 449
            +E G  + +AED+  +L +  +   +E  +AAL     +  +    + G  +   G AL  ATR GH ++V+ LL  GASV  +  S    APLH AA +G T++V LL+  G   D  DN ++
Sbjct:    2 SENGDPNEMAEDVNELLLSAAMDGSVEGVNAALEAGADINYKPGFKQPGNRITSTGTALFNATRDGHVDVVRLLLREGASVVQRFGSL---APLHVAALKGYTEIVDLLVQHGATVDIRDNWDY 122          
BLAST of mRNA_L-elsbetiae_contig9277.18283.1 vs. uniprot
Match: UPI0009E25153 (ankyrin-1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E25153)

HSP 1 Score: 55.8 bits (133), Expect = 1.100e-5
Identity = 47/145 (32.41%), Postives = 69/145 (47.59%), Query Frame = -1
Query:  132 ISSSITASAMVNREKREALRGAEEGIFDLLAEDLTSVLWAELLKF------PLEHAALRGDRSLAQRLVRAGE--NMGDALHA----------ATRGGHEEIVKDLLDNGASVASKEASWDGRAPLHHAAHRGETKVVQLLLLKG 512
            +  SI  +   N  KR  L  A       +AE L  V  +E   +      PL HAA      + Q L+ AG   N   AL+A          A++ G  +  + L+ NGA +  K  S +G++PLH+AA +G TKV++LLL +G
Sbjct:   43 LQKSINETVEQNPCKRIGLHQACRDGLPCVAERLIRVSASECNAYDGDGLTPLHHAARGNHVQIIQLLLNAGADINFPAALNAGCAYMTPLICASKFGSLDACRLLIQNGAHITKK--SCNGQSPLHYAARKGHTKVLELLLKEG 185          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9277.18283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LL12_ECTSI1.500e-2150.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXK5_9PHAE1.240e-1658.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTQ8_ECTSI3.550e-1042.55Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KTD7_9PHAE5.960e-935.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001BF9A9A82.580e-634.19uncharacterized protein n=1 Tax=Lentinula edodes T... [more]
D7G981_ECTSI3.670e-639.24Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A8H5MCG0_9AGAR6.380e-633.33Uncharacterized protein n=1 Tax=Gymnopus confluens... [more]
A0A5C3KTB3_9AGAR8.030e-639.24Ankyrin (Fragment) n=1 Tax=Coprinopsis marcescibil... [more]
UPI0015FFBC358.620e-633.87poly [ADP-ribose] polymerase tankyrase-1-like isof... [more]
UPI0009E251531.100e-532.41ankyrin-1-like n=1 Tax=Orbicella faveolata TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9277contigL-elsbetiae_contig9277:271..872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size602
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9277.18283.1prot_L-elsbetiae_contig9277.18283.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9277 289..831 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816998.9242592-UTR-L-elsbetiae_contig9277:270..2881622816998.9242592-UTR-L-elsbetiae_contig9277:270..288Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9277 271..288 +
1691683972.2093015-UTR-L-elsbetiae_contig9277:270..2881691683972.2093015-UTR-L-elsbetiae_contig9277:270..288Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9277 271..288 +
1622816998.947939-UTR-L-elsbetiae_contig9277:831..8721622816998.947939-UTR-L-elsbetiae_contig9277:831..872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9277 832..872 +
1691683972.232933-UTR-L-elsbetiae_contig9277:831..8721691683972.232933-UTR-L-elsbetiae_contig9277:831..872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9277 832..872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816998.937389-CDS-L-elsbetiae_contig9277:288..8311622816998.937389-CDS-L-elsbetiae_contig9277:288..831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9277 289..831 +
1691683972.2226417-CDS-L-elsbetiae_contig9277:288..8311691683972.2226417-CDS-L-elsbetiae_contig9277:288..831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9277 289..831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9277.18283.1

>prot_L-elsbetiae_contig9277.18283.1 ID=prot_L-elsbetiae_contig9277.18283.1|Name=mRNA_L-elsbetiae_contig9277.18283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MIIPLHHQRIPHIQHPEQYIFPQVPQTCSRLSIASLSSPLSNSNCTTFVS
PRWAAWWRGARPSHDASLEATDAPLSSRSFTISSWPPRVAACSASPIFSP
ARTNLCARLRSPRSAACSSGNFSNSAHSTEVKSSARRSNIPSSAPRSASR
FSLFTIALAVMLLLIMRGVPQPKKGTKGFV*
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mRNA from alignment at L-elsbetiae_contig9277:271..872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9277.18283.1 ID=mRNA_L-elsbetiae_contig9277.18283.1|Name=mRNA_L-elsbetiae_contig9277.18283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=602bp|location=Sequence derived from alignment at L-elsbetiae_contig9277:271..872+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCCCCGTGACATACAGATGATCATACCACTACATCACCAGCGTATCCC CCATATCCAACACCCGGAACAGTATATTTTCCCCCAAGTACCACAAACAT GCTCCCGGTTGTCTATCGCGTCTTTGTCATCCCCCTTGAGCAACAGCAAC TGCACCACCTTCGTTTCCCCTCGGTGGGCGGCATGGTGGAGAGGAGCACG GCCATCCCATGACGCTTCCTTGGAGGCGACAGATGCCCCATTGTCCAGCA GGTCCTTCACGATCTCTTCATGGCCGCCCCGAGTGGCTGCATGTAGTGCA TCCCCCATATTTTCCCCTGCCCGAACCAACCTCTGTGCGAGGCTTCGGTC GCCTCGAAGTGCGGCATGCTCGAGCGGAAATTTCAGCAACTCCGCCCACA GCACTGAGGTCAAGTCTTCGGCAAGGAGGTCGAATATCCCCTCCTCAGCT CCTCGAAGTGCTTCACGTTTCTCCCTGTTTACCATAGCGCTTGCCGTGAT GCTGCTACTTATTATGCGGGGTGTACCACAGCCAAAGAAGGGTACCAAGG GCTTCGTGTGAAGTGTGCGTGAAGCACTGAAGCAGTTACCTCGCTCGAAG GC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9277:271..872+

>mRNA_L-elsbetiae_contig9277.18283.1 ID=mRNA_L-elsbetiae_contig9277.18283.1|Name=mRNA_L-elsbetiae_contig9277.18283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig9277:271..872+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCATACCACTACATCACCAGCGTATCCCCCATATCCAACACCCGGA
ACAGTATATTTTCCCCCAAGTACCACAAACATGCTCCCGGTTGTCTATCG
CGTCTTTGTCATCCCCCTTGAGCAACAGCAACTGCACCACCTTCGTTTCC
CCTCGGTGGGCGGCATGGTGGAGAGGAGCACGGCCATCCCATGACGCTTC
CTTGGAGGCGACAGATGCCCCATTGTCCAGCAGGTCCTTCACGATCTCTT
CATGGCCGCCCCGAGTGGCTGCATGTAGTGCATCCCCCATATTTTCCCCT
GCCCGAACCAACCTCTGTGCGAGGCTTCGGTCGCCTCGAAGTGCGGCATG
CTCGAGCGGAAATTTCAGCAACTCCGCCCACAGCACTGAGGTCAAGTCTT
CGGCAAGGAGGTCGAATATCCCCTCCTCAGCTCCTCGAAGTGCTTCACGT
TTCTCCCTGTTTACCATAGCGCTTGCCGTGATGCTGCTACTTATTATGCG
GGGTGTACCACAGCCAAAGAAGGGTACCAAGGGCTTCGTGTGAATGATCA
TACCACTACATCACCAGCGTATCCCCCATATCCAACACCCGGAACAGTAT
ATTTTCCCCCAAGTACCACAAACATGCTCCCGGTTGTCTATCGCGTCTTT
GTCATCCCCCTTGAGCAACAGCAACTGCACCACCTTCGTTTCCCCTCGGT
GGGCGGCATGGTGGAGAGGAGCACGGCCATCCCATGACGCTTCCTTGGAG
GCGACAGATGCCCCATTGTCCAGCAGGTCCTTCACGATCTCTTCATGGCC
GCCCCGAGTGGCTGCATGTAGTGCATCCCCCATATTTTCCCCTGCCCGAA
CCAACCTCTGTGCGAGGCTTCGGTCGCCTCGAAGTGCGGCATGCTCGAGC
GGAAATTTCAGCAACTCCGCCCACAGCACTGAGGTCAAGTCTTCGGCAAG
GAGGTCGAATATCCCCTCCTCAGCTCCTCGAAGTGCTTCACGTTTCTCCC
TGTTTACCATAGCGCTTGCCGTGATGCTGCTACTTATTATGCGGGGTGTA
CCACAGCCAAAGAAGGGTACCAAGGGCTTCGTGTGA
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