mRNA_L-elsbetiae_contig9274.18281.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9274.18281.1
Unique NamemRNA_L-elsbetiae_contig9274.18281.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9274.18281.1 vs. uniprot
Match: D8LSG0_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.310e-26
Identity = 70/126 (55.56%), Postives = 88/126 (69.84%), Query Frame = 1 
Query:  220 PSASPPAP-WLDVLLGLEVADSAGTKASRAAVIVGEVREMEAKELALLQRLHKVEANMTLEGYATFRSASFRSSSVAYADLEALQEQHLKQRWRRQERSEEEEEAHQQELADLAMNGYFVSNLLQE 594
            P A+  AP WL VL+GL + + AGT A+RA+V+V E R+MEAKELA+LQRL K++  +TL+ Y  FR A  RSSS AYA LEALQ Q+L++            E HQQELADLAMNG FVS+LL +
Sbjct:  439 PRAAAAAPAWLGVLVGLGMPEFAGTGAARASVVVREARDMEAKELAVLQRLQKLKPEVTLDDYTAFRGAGLRSSSPAYASLEALQGQYLRR----------PPEDHQQELADLAMNGSFVSDLLAQ 554
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9274.18281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSG0_ECTSI3.310e-2655.56PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9274contigL-elsbetiae_contig9274:4714..6569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size746
Cds size744
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9274.18281.1prot_L-elsbetiae_contig9274.18281.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9274 4716..6569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816998.8645535-CDS-L-elsbetiae_contig9274:4715..48651622816998.8645535-CDS-L-elsbetiae_contig9274:4715..4865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9274 4716..4865 -
1691683972.1776736-CDS-L-elsbetiae_contig9274:4715..48651691683972.1776736-CDS-L-elsbetiae_contig9274:4715..4865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9274 4716..4865 -
1622816998.8742263-CDS-L-elsbetiae_contig9274:5506..57251622816998.8742263-CDS-L-elsbetiae_contig9274:5506..5725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9274 5507..5725 -
1691683972.1892576-CDS-L-elsbetiae_contig9274:5506..57251691683972.1892576-CDS-L-elsbetiae_contig9274:5506..5725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9274 5507..5725 -
1622816998.8849561-CDS-L-elsbetiae_contig9274:6194..65691622816998.8849561-CDS-L-elsbetiae_contig9274:6194..6569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9274 6195..6569 -
1691683972.1987865-CDS-L-elsbetiae_contig9274:6194..65691691683972.1987865-CDS-L-elsbetiae_contig9274:6194..6569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9274 6195..6569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9274.18281.1

>prot_L-elsbetiae_contig9274.18281.1 ID=prot_L-elsbetiae_contig9274.18281.1|Name=mRNA_L-elsbetiae_contig9274.18281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=248bp
GEGEDAAAAQAVSTANGAVTPATLSSTDITTTTKTRRKSRQKSTKQQRKQ
KQQQDNAETAKEGANDGMGTNTPPSASPPAPWLDVLLGLEVADSAGTKAS
RAAVIVGEVREMEAKELALLQRLHKVEANMTLEGYATFRSASFRSSSVAY
ADLEALQEQHLKQRWRRQERSEEEEEAHQQELADLAMNGYFVSNLLQEGC
GPTEPATAAEPSTPTPAPQKSSLSPTATSEAGKGSLTNGGNDRIAKGE
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mRNA from alignment at L-elsbetiae_contig9274:4714..6569-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9274.18281.1 ID=mRNA_L-elsbetiae_contig9274.18281.1|Name=mRNA_L-elsbetiae_contig9274.18281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1856bp|location=Sequence derived from alignment at L-elsbetiae_contig9274:4714..6569- (Laminarionema elsbetiae ELsaHSoW15)
GGAGAAGGAGAGGATGCGGCGGCGGCACAAGCTGTAAGTACCGCTAACGG
TGCCGTCACCCCCGCGACGCTGTCGTCTACGGATATCACGACAACAACAA
AGACGAGACGAAAATCACGCCAGAAATCGACCAAGCAACAACGGAAACAA
AAGCAGCAGCAAGACAACGCCGAGACGGCTAAGGAAGGCGCGAACGACGG
TATGGGCACCAACACTCCCCCCTCCGCCTCGCCGCCGGCGCCTTGGCTCG
ACGTTCTTCTCGGGCTTGAGGTGGCGGACTCTGCGGGGACGAAGGCTTCC
CGGGCCGCTGTCATCGTGGGGGAAGTGAGAGAGATGGAGGCTAAGGAACT
GGCGTTGCTCCAACGCTTGCACAAGGTGGGTGAGTGGGCGAGTGCCGATG
GGCGTGTGGGTACCCAGCCAGGGGCTGTAGGAGGGGGGTCACCCCTTTTT
TCGTGTCATGTCAGGATCAAATCGTGCCTTAGATGGCCCCCGAGTAGCGG
TTTGCGGGGCACCTCAGGAGCGGGGTGTGTGCTGGTGGTCGGGTCAGGTC
CCTTGATGAGCTGGATGGGTCCTACTCCACGCCACCTTGGCGATGGACCT
ATGCACGCGTGTGCCTTCTTTGTTGAGGAGCTGATCCGCCCCGCACAACC
TATTTTTCATCGTTGCTTTTTTGTGATCTCAATCCAACATCAAACCCACG
CGTGTTGCTGTTGTTTTGCTGGTGGTTAAAAAAAAACACCACGGAATTGG
CTTAGATGGCATCCGAGTGGGGAGAGAGGGGGTAAGGCGCTTTGTTTGGT
TGACGCTGGCAGTGTCCTATATTTTTAATTTGTTGTCCAACCAGGTTGAG
GCGAACATGACCCTCGAGGGATACGCCACATTCCGCAGCGCCAGCTTCCG
CAGTTCTTCGGTGGCCTACGCTGACCTAGAGGCGCTCCAGGAGCAGCACC
TGAAGCAGCGGTGGCGGCGGCAAGAGCGGTCGGAGGAGGAGGAGGAGGCC
CACCAGCAAGAGCTTGCCGACCTCGCCATGAACGGATATTTTGTGTCGAA
TCTCCTCCAAGAGGTGAGGGGGGAACTTAGCAACCCGCCGGTCGAGGGGC
TACATAACGCGTATTGTATCGCCCTTAACAGATTGACTGTTGTGGCCTAC
CTTCTTCTTTTTTTTGGGGGGGGGGGGGGGGGGGCGGAGGGGGAGTTGTA
GAGAGCCTTTGGATGAAAGGGCCTCGCCATTCCACGAGACCTGCGTGCAT
CGAAGTTTGTCTTTCCTTGGAGAAAGTGATAGGAGTATATTGTGTTGTGT
GTGTGAATTCTCGGGTGATTGCGATGACGAAAAACGCCGGGATCTCCTCG
CCGTTTTGTTGGTGCGGTGTGGCTCGTGGTACGAGCCGAGCCTAGATCTG
AGCTCTGTTCCCTATCGTTGCCTGGACGGCTTCTTCCGTTCGTCCGTCTG
TCAAGTTTATTGTGGGGTGTTGTCGAATACCTGGTGGCGTTTTTGTGTTG
TGGCGGCTGGAAGGGTTGGTTGATGGTGGGGGGGGCTCTCGTGTAGGCCA
TAAAGGACAGAGGTGTTAATTTGAAGAGGAGAAAAACAGAACCAAGGCAA
ACGACACCATTTCAACGCTTTCCCTCGCTTTTTTCAGGTAGGTATATGTT
TCTCACCCTTCCCTGTCTCCTGTCTTTGTATCCCACCCCCACCTTCTCGT
CCAGGGTTGCGGACCTACTGAGCCTGCCACCGCTGCGGAACCGTCAACAC
CCACGCCGGCTCCACAAAAATCTTCGCTTTCGCCGACCGCCACTTCTGAG
GCCGGCAAGGGCAGCCTCACCAACGGAGGCAACGACCGCATCGCTAAAGG
TGAAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9274:4714..6569-

>mRNA_L-elsbetiae_contig9274.18281.1 ID=mRNA_L-elsbetiae_contig9274.18281.1|Name=mRNA_L-elsbetiae_contig9274.18281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1488bp|location=Sequence derived from alignment at L-elsbetiae_contig9274:4714..6569- (Laminarionema elsbetiae ELsaHSoW15)
GGAGAAGGAGAGGATGCGGCGGCGGCACAAGCTGTAAGTACCGCTAACGG
TGCCGTCACCCCCGCGACGCTGTCGTCTACGGATATCACGACAACAACAA
AGACGAGACGAAAATCACGCCAGAAATCGACCAAGCAACAACGGAAACAA
AAGCAGCAGCAAGACAACGCCGAGACGGCTAAGGAAGGCGCGAACGACGG
TATGGGCACCAACACTCCCCCCTCCGCCTCGCCGCCGGCGCCTTGGCTCG
ACGTTCTTCTCGGGCTTGAGGTGGCGGACTCTGCGGGGACGAAGGCTTCC
CGGGCCGCTGTCATCGTGGGGGAAGTGAGAGAGATGGAGGCTAAGGAACT
GGCGTTGCTCCAACGCTTGCACAAGGGAGAAGGAGAGGATGCGGCGGCGG
CACAAGCTGTAAGTACCGCTAACGGTGCCGTCACCCCCGCGACGCTGTCG
TCTACGGATATCACGACAACAACAAAGACGAGACGAAAATCACGCCAGAA
ATCGACCAAGCAACAACGGAAACAAAAGCAGCAGCAAGACAACGCCGAGA
CGGCTAAGGAAGGCGCGAACGACGGTATGGGCACCAACACTCCCCCCTCC
GCCTCGCCGCCGGCGCCTTGGCTCGACGTTCTTCTCGGGCTTGAGGTGGC
GGACTCTGCGGGGACGAAGGCTTCCCGGGCCGCTGTCATCGTGGGGGAAG
TGAGAGAGATGGAGGCTAAGGAACTGGCGTTGCTCCAACGCTTGCACAAG
GTTGAGGCGAACATGACCCTCGAGGGATACGCCACATTCCGCAGCGCCAG
CTTCCGCAGTTCTTCGGTGGCCTACGCTGACCTAGAGGCGCTCCAGGAGC
AGCACCTGAAGCAGCGGTGGCGGCGGCAAGAGCGGTCGGAGGAGGAGGAG
GAGGCCCACCAGCAAGAGCTTGCCGACCTCGCCATGAACGGATATTTTGT
GTCGAATCTCCTCCAAGAGGTTGAGGCGAACATGACCCTCGAGGGATACG
CCACATTCCGCAGCGCCAGCTTCCGCAGTTCTTCGGTGGCCTACGCTGAC
CTAGAGGCGCTCCAGGAGCAGCACCTGAAGCAGCGGTGGCGGCGGCAAGA
GCGGTCGGAGGAGGAGGAGGAGGCCCACCAGCAAGAGCTTGCCGACCTCG
CCATGAACGGATATTTTGTGTCGAATCTCCTCCAAGAGGGTTGCGGACCT
ACTGAGCCTGCCACCGCTGCGGAACCGTCAACACCCACGCCGGCTCCACA
AAAATCTTCGCTTTCGCCGACCGCCACTTCTGAGGCCGGCAAGGGCAGCC
TCACCAACGGAGGCAACGACCGCATCGCTAAAGGTGAAGGTTGCGGACCT
ACTGAGCCTGCCACCGCTGCGGAACCGTCAACACCCACGCCGGCTCCACA
AAAATCTTCGCTTTCGCCGACCGCCACTTCTGAGGCCGGCAAGGGCAGCC
TCACCAACGGAGGCAACGACCGCATCGCTAAAGGTGAA
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