prot_L-elsbetiae_contig9274.18281.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9274.18281.1
Unique Nameprot_L-elsbetiae_contig9274.18281.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length248
Homology
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BLAST of mRNA_L-elsbetiae_contig9274.18281.1 vs. uniprot
Match: D8LSG0_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.310e-26
Identity = 70/126 (55.56%), Postives = 88/126 (69.84%), Query Frame = 0 
Query:   74 PSASPPAP-WLDVLLGLEVADSAGTKASRAAVIVGEVREMEAKELALLQRLHKVEANMTLEGYATFRSASFRSSSVAYADLEALQEQHLKQRWRRQERSEEEEEAHQQELADLAMNGYFVSNLLQE 198
            P A+  AP WL VL+GL + + AGT A+RA+V+V E R+MEAKELA+LQRL K++  +TL+ Y  FR A  RSSS AYA LEALQ Q+L++            E HQQELADLAMNG FVS+LL +
Sbjct:  439 PRAAAAAPAWLGVLVGLGMPEFAGTGAARASVVVREARDMEAKELAVLQRLQKLKPEVTLDDYTAFRGAGLRSSSPAYASLEALQGQYLRR----------PPEDHQQELADLAMNGSFVSDLLAQ 554
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9274.18281.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSG0_ECTSI3.310e-2655.56PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 109..129
NoneNo IPR availableCOILSCoilCoilcoord: 168..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9274contigL-elsbetiae_contig9274:4716..6569 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9274.18281.1mRNA_L-elsbetiae_contig9274.18281.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9274 4714..6569 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9274.18281.1 ID=prot_L-elsbetiae_contig9274.18281.1|Name=mRNA_L-elsbetiae_contig9274.18281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=248bp
GEGEDAAAAQAVSTANGAVTPATLSSTDITTTTKTRRKSRQKSTKQQRKQ
KQQQDNAETAKEGANDGMGTNTPPSASPPAPWLDVLLGLEVADSAGTKAS
RAAVIVGEVREMEAKELALLQRLHKVEANMTLEGYATFRSASFRSSSVAY
ADLEALQEQHLKQRWRRQERSEEEEEAHQQELADLAMNGYFVSNLLQEGC
GPTEPATAAEPSTPTPAPQKSSLSPTATSEAGKGSLTNGGNDRIAKGE
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