mRNA_L-elsbetiae_contig9270.18280.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9270.18280.1
Unique NamemRNA_L-elsbetiae_contig9270.18280.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9270.18280.1 vs. uniprot
Match: D7G548_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G548_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.650e-37
Identity = 69/82 (84.15%), Postives = 70/82 (85.37%), Query Frame = 1
Query:    1 VCGARIENYLLEKQRVVRQAKGERNFHIFYQLCTSGIAAHLELGGPEHFRYLSESGCVSVAGINDHKDFAEVEEVRQRNGVG 246
            VCGARIENYLLEKQRVV QAKGERNFHIFYQLCTS IAAHLELG PEHFRYL ESGCVSV GIND KDF EVEE   + G G
Sbjct:  218 VCGARIENYLLEKQRVVAQAKGERNFHIFYQLCTSEIAAHLELGAPEHFRYLRESGCVSVPGINDQKDFVEVEEAFTKLGFG 299          
BLAST of mRNA_L-elsbetiae_contig9270.18280.1 vs. uniprot
Match: A0A6H5KSK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK5_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.190e-36
Identity = 68/82 (82.93%), Postives = 69/82 (84.15%), Query Frame = 1
Query:    1 VCGARIENYLLEKQRVVRQAKGERNFHIFYQLCTSGIAAHLELGGPEHFRYLSESGCVSVAGINDHKDFAEVEEVRQRNGVG 246
            VCGARIENYLLEKQRVV QAKGERNFHIFYQLC S IAAHLELG PEHFRYL ESGCVSV GIND KDF EVEE   + G G
Sbjct:  280 VCGARIENYLLEKQRVVAQAKGERNFHIFYQLCMSEIAAHLELGAPEHFRYLRESGCVSVPGINDQKDFVEVEEAFTKLGFG 361          
BLAST of mRNA_L-elsbetiae_contig9270.18280.1 vs. uniprot
Match: A0A836C908_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C908_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.190e-28
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 VCGARIENYLLEKQRVVRQAKGERNFHIFYQLCTSG-IAAHLELGGPEHFRYLSESGCVSVAGINDHKDFAEVEEVRQRNGV 243
            +CGARIENYLLEKQRVV QAKGERN+H+FYQLC S  +A  L LG PEHFRYL  SGC +V GI+D +DF EVEE     G+
Sbjct:  383 ICGARIENYLLEKQRVVAQAKGERNYHVFYQLCASATVAPSLALGAPEHFRYLRASGCTAVPGIDDARDFREVEEALDALGL 464          
BLAST of mRNA_L-elsbetiae_contig9270.18280.1 vs. uniprot
Match: A0A507CEC0_9FUNG (Non-specific serine/threonine protein kinase n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CEC0_9FUNG)

HSP 1 Score: 90.5 bits (223), Expect = 2.320e-19
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    7 GARIENYLLEKQRVVRQAKGERNFHIFYQLCTSGIAAH---LELGGPEHFRYLSESGCVSVAGINDHKDFAEVEEVRQRNGVG 246
            G +I +YLLEK RVV+Q  GERNFHIFYQ+     +A    L+L GPE++RYL++S CV V+G+ND  DF EV +  +  G+G
Sbjct:  723 GGKILDYLLEKSRVVQQQSGERNFHIFYQILAGSSSAEKSQLQLFGPEYYRYLNQSNCVKVSGVNDASDFKEVRDAMKSVGLG 805          
BLAST of mRNA_L-elsbetiae_contig9270.18280.1 vs. uniprot
Match: A0A7R9UA42_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA42_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.750e-18
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 VCGARIENYLLEKQRVVRQAKGERNFHIFYQLCTSGIAAHLELGGPEHFRYLSESGCVSVAGINDHKDFAEV 216
            +CG +IENYLLEK RV  Q  GERNFHIFYQLC +       LG P  FRYL++SGC +V  ++D  DF++V
Sbjct:  289 ICGCKIENYLLEKCRVTFQQAGERNFHIFYQLCKARQGEQYGLGDPTWFRYLNQSGCTTVRNVDDVDDFSKV 360          
BLAST of mRNA_L-elsbetiae_contig9270.18280.1 vs. uniprot
Match: A0A2R5GW22_9STRA (Myosin-11 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW22_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.320e-17
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 VCGARIENYLLEKQRVVRQAKGERNFHIFYQLCTSGIAAHLELGGPEHFRYLSESGCVSVAGINDHKDFAEVEEVRQRNGV 243
            + GARI+N+LLEK RVVRQ +GERN+H+FYQL TS   +   LG  E F YL+ SGC +V G++D  ++  + +  +  G+
Sbjct:  419 ISGARIDNFLLEKSRVVRQGRGERNYHVFYQLLTSNRVSEFGLGSMESFAYLNGSGCYTVDGVDDRNEYQVLLQAFEEMGI 499          
BLAST of mRNA_L-elsbetiae_contig9270.18280.1 vs. uniprot
Match: L8H9I8_ACACA (Myosin-1, putative n=3 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H9I8_ACACA)

HSP 1 Score: 85.5 bits (210), Expect = 1.330e-17
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 VCGARIENYLLEKQRVVRQAKGERNFHIFYQLCTSGI----AAHLELGGPEHFRYLSESGCVSVAGINDHKDFAEVEEVRQR 234
            +CGA   NYLLEK RVV Q KGERNFHIFYQL  +G+     A   L   EH+ Y++ SGC+++ G++D KDF EV+E   R
Sbjct:  249 ICGASTVNYLLEKSRVVYQIKGERNFHIFYQL-VAGLDQETLAKWNLKSAEHYNYINTSGCITIDGVDDAKDFEEVKEAMVR 329          
BLAST of mRNA_L-elsbetiae_contig9270.18280.1 vs. uniprot
Match: A0A152A126_9MYCE (Class VII unconventional myosin n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A126_9MYCE)

HSP 1 Score: 82.8 bits (203), Expect = 1.180e-16
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 VCGARIENYLLEKQRVVRQAKGERNFHIFYQLCTSGIAAH----LELGGPEHFRYLSESGCVSVAGINDHKDFAEV 216
            + GARI NYLLEK R+V QAK ERN+HIFYQL  +G++      L LG PE + YL++SGC+ +  IND +DF  V
Sbjct:  173 ISGARIINYLLEKSRIVNQAKSERNYHIFYQLL-AGLSDEQKQKLSLGEPEEYHYLNQSGCIRIENINDVEDFEHV 247          
BLAST of mRNA_L-elsbetiae_contig9270.18280.1 vs. uniprot
Match: UPI000644AF01 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644AF01)

HSP 1 Score: 82.4 bits (202), Expect = 1.560e-16
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    7 GARIENYLLEKQRVVRQAKGERNFHIFYQLCTSGIAA---HLELGGPEHFRYLSESGCVSVAGINDHKDFAEVEEVRQRNGV 243
            G R+ NYLLEK RVV Q KGERNFHIFYQL +   A     L L  P+ ++YL+ SGC SV G++D+++F +V +  +  GV
Sbjct:  164 GGRVTNYLLEKSRVVYQTKGERNFHIFYQLLSGASAQMKNELRLESPDKYQYLASSGCYSVDGVDDNQEFQDVLKAMKVIGV 245          
BLAST of mRNA_L-elsbetiae_contig9270.18280.1 vs. uniprot
Match: M4BFN1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFN1_HYAAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.590e-16
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    7 GARIENYLLEKQRVVRQAKGERNFHIFYQLCTSGIAA-----HLELGGPEHFRYLSESGCVSVAGINDHKDFAEVEEVRQRNGV 243
            G ++ NYLLEK RVV+  KGERNFHIFYQ+      A     HL+ GGPE ++YL  SGC  V  +ND ++F E     Q  G+
Sbjct:  189 GGKVTNYLLEKSRVVKPGKGERNFHIFYQMVAGLSPAAKQKLHLDQGGPESYQYLEASGCYDVDDVNDAQEFEETMAAMQHVGI 272          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9270.18280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G548_ECTSI1.650e-3784.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSK5_9PHAE1.190e-3682.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C908_9STRA5.190e-2867.07P-loop containing nucleoside triphosphate hydrolas... [more]
A0A507CEC0_9FUNG2.320e-1951.81Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7R9UA42_9STRA2.750e-1855.56Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2R5GW22_9STRA1.320e-1746.91Myosin-11 n=1 Tax=Hondaea fermentalgiana TaxID=231... [more]
L8H9I8_ACACA1.330e-1752.44Myosin-1, putative n=3 Tax=Acanthamoeba castellani... [more]
A0A152A126_9MYCE1.180e-1653.95Class VII unconventional myosin n=1 Tax=Tieghemost... [more]
UPI000644AF011.560e-1650.00hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
M4BFN1_HYAAE1.590e-1647.62Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9270contigL-elsbetiae_contig9270:6568..7735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue6.7e-32
Seed eggNOG ortholog2880.D7G548
KEGG koko:K21868
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0015629,GO:0016459,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816998.7772982-CDS-L-elsbetiae_contig9270:6567..66601622816998.7772982-CDS-L-elsbetiae_contig9270:6567..6660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9270 6568..6660 +
1691683972.1295655-CDS-L-elsbetiae_contig9270:6567..66601691683972.1295655-CDS-L-elsbetiae_contig9270:6567..6660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9270 6568..6660 +
1622816998.7879748-CDS-L-elsbetiae_contig9270:7582..77351622816998.7879748-CDS-L-elsbetiae_contig9270:7582..7735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9270 7583..7735 +
1691683972.1414785-CDS-L-elsbetiae_contig9270:7582..77351691683972.1414785-CDS-L-elsbetiae_contig9270:7582..7735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9270 7583..7735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9270.18280.1prot_L-elsbetiae_contig9270.18280.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9270 6568..7735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9270.18280.1

>prot_L-elsbetiae_contig9270.18280.1 ID=prot_L-elsbetiae_contig9270.18280.1|Name=mRNA_L-elsbetiae_contig9270.18280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
VCGARIENYLLEKQRVVRQAKGERNFHIFYQLCTSGIAAHLELGGPEHFR
YLSESGCVSVAGINDHKDFAEVEEVRQRNGVG
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mRNA from alignment at L-elsbetiae_contig9270:6568..7735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9270.18280.1 ID=mRNA_L-elsbetiae_contig9270.18280.1|Name=mRNA_L-elsbetiae_contig9270.18280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1168bp|location=Sequence derived from alignment at L-elsbetiae_contig9270:6568..7735+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTGCGGGGCGAGGATCGAGAACTACCTCTTGGAGAAGCAAAGGGTGGT TCGGCAGGCGAAGGGAGAAAGAAACTTCCACATCTTTTACCAGGTATGTG TTGTATATTATGTATGTTGTTTTGTTGTTTTTGTTGTTGTCTCACACTAT GTAGCTGTAAAGAGAGGAAAAAAAATGCCGGCCCGTGGTCGCAGAAGTAC TGGGGCCATCAAAAGATCCGGAGTCATGATGATTTGTAGTTGGTGTTGTT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTGTTATTGTTATTGT TGTTACTGTGACATTAGATGTATCCCAAGAATACCGGTCCGTGGTCGCAA AAGTACTGGAGCCATCAGAAGATCCGAAAAAATTGTGTGCATGTACTTTT GTACTGGTACGGTTGTATCGTAGGTACGGAACTACCGTAGGTGACACAAG ATACCACACCCCCTGGATCGAGTTTTAGAGCTCGATTACTCCGTAACGAA GAATGTGCCAGCTCCAAACAACACATTTTCGGACAGCCCTCGACTAGATC TTTCCAACGCCACCCCTTTCGGTACTGTCATTCTTCTCGCTGGGGAGGAA TCGAATCGAGCTTTGAAAATCTGTCCAGGGGGTGTGGTATCTTGTGTCAC CTACGGTAGAGAGGGTCTGCTCGTGCTGGCTGTGCGCACTAAATGTATGT GAACGTTGTTACTTACGTTGGCTGTTTCCCAAGAATACCAGTCTGTGGTC GCAAAAAGTACTGGAGCCACCAGAAGATCCGAAAATTTGCATGTAGCATG TACGTGTATGTTGTTTATGTATGTAGTATCGTAGGCACGGAACTAGAGAG GGTCTGCTCGTCGTGCTGGCTGTGCGCACTAAAAAGTGCCGCAACAGGCG ACGATGGGTACAGCAGTAGCCCCTCCCCCCCCCAGCCGCCGCCGCCGCCG CCGCCGCCCTTCTGACTACGCGCGATCGCGTTGTGCTCTCTCTCTTCTCT CTCGTGCCTACACAGCTGTGCACGAGCGGGATCGCGGCGCACCTGGAGCT GGGAGGCCCGGAGCATTTCCGCTACCTCTCCGAGAGCGGCTGCGTGTCCG TGGCGGGTATCAACGACCACAAGGATTTCGCGGAGGTGGAAGAGGTGAGG CAGAGGAACGGGGTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9270:6568..7735+

>mRNA_L-elsbetiae_contig9270.18280.1 ID=mRNA_L-elsbetiae_contig9270.18280.1|Name=mRNA_L-elsbetiae_contig9270.18280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig9270:6568..7735+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTGCGGGGCGAGGATCGAGAACTACCTCTTGGAGAAGCAAAGGGTGGT
TCGGCAGGCGAAGGGAGAAAGAAACTTCCACATCTTTTACCAGGTGTGCG
GGGCGAGGATCGAGAACTACCTCTTGGAGAAGCAAAGGGTGGTTCGGCAG
GCGAAGGGAGAAAGAAACTTCCACATCTTTTACCAGCTGTGCACGAGCGG
GATCGCGGCGCACCTGGAGCTGGGAGGCCCGGAGCATTTCCGCTACCTCT
CCGAGAGCGGCTGCGTGTCCGTGGCGGGTATCAACGACCACAAGGATTTC
GCGGAGGTGGAAGAGGTGAGGCAGAGGAACGGGGTGGGGCTGTGCACGAG
CGGGATCGCGGCGCACCTGGAGCTGGGAGGCCCGGAGCATTTCCGCTACC
TCTCCGAGAGCGGCTGCGTGTCCGTGGCGGGTATCAACGACCACAAGGAT
TTCGCGGAGGTGGAAGAGGTGAGGCAGAGGAACGGGGTGGGG
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