mRNA_L-elsbetiae_contig9257.18269.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9257.18269.1
Unique NamemRNA_L-elsbetiae_contig9257.18269.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9257.18269.1 vs. uniprot
Match: A0A6H5KJD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD5_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 8.580e-41
Identity = 62/83 (74.70%), Postives = 68/83 (81.93%), Query Frame = 1
Query:   10 QVIVALKVLASGCCFQDAASCTLMSRTTAEVSFHRFCEKFTEGLWDTWVQLPVGDDLDKVAEEYRKCGYPGAVGSLDCTHLAW 258
            +V+  LKVLASGCCFQD AS +LMSRTTAE SFH FCE F+EGLWDTWV+LP GD+L KV E YRKCGYPGA GS DCTH  W
Sbjct:   58 KVLGTLKVLASGCCFQDVASFSLMSRTTAETSFHHFCENFSEGLWDTWVKLPRGDELKKVEEIYRKCGYPGATGSTDCTHFRW 140          
BLAST of mRNA_L-elsbetiae_contig9257.18269.1 vs. uniprot
Match: A0A6H5L2S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2S9_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 5.140e-36
Identity = 59/79 (74.68%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   22 ALKVLASGCCFQDAASCTLMSRTTAEVSFHRFCEKFTEGLWDTWVQLPVGDDLDKVAEEYRKCGYPGAVGSLDCTHLAW 258
            AL+VLASGCCFQD AS +L SRTTAE SFH FCEKF+EGLWDTWV+L  GD L KV E YRK GYPGA GS DCTH  W
Sbjct:   21 ALEVLASGCCFQDVASFSLTSRTTAETSFHHFCEKFSEGLWDTWVKLLRGDSLKKVEEIYRKYGYPGATGSTDCTHFRW 99          
BLAST of mRNA_L-elsbetiae_contig9257.18269.1 vs. uniprot
Match: A0A6H5KHV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV5_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 9.300e-34
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 1
Query:   10 QVIVALKVLASGCCFQDAASCTLMSRTTAEVSFHRFCEKFTEGLWDTWVQLPVGDDLDKVAEEYRKCGYPGA 225
            +V+  LKVLASGCCFQD AS +LMSRTTAE SFH FCEKF+EGLWDTWV LP GD+  KV E YRKCGYPGA
Sbjct:   26 KVMGTLKVLASGCCFQDVASFSLMSRTTAETSFHHFCEKFSEGLWDTWVNLPGGDEFKKVEEIYRKCGYPGA 97          
BLAST of mRNA_L-elsbetiae_contig9257.18269.1 vs. uniprot
Match: A0A6H5KGV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV3_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.540e-32
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 1
Query:   10 QVIVALKVLASGCCFQDAASCTLMSRTTAEVSFHRFCEKFTEGLWDTWVQLPVGDDLDKVAEEYRKCGYPGA 225
            +V+  LKVLASGCCFQD AS +LMSRTTAE SFH FCEKF+EGLWDTWV+LP GD+  KV E YRKCGYPGA
Sbjct:  137 KVMGTLKVLASGCCFQDVASFSLMSRTTAETSFHHFCEKFSEGLWDTWVKLPGGDEFKKVEEIYRKCGYPGA 208          
BLAST of mRNA_L-elsbetiae_contig9257.18269.1 vs. uniprot
Match: A0A6H5KT09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT09_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.970e-30
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:   79 MSRTTAEVSFHRFCEKFTEGLWDTWVQLPVGDDLDKVAEEYRKCGYPGAVGSLDCTHLAW 258
            MSRTTAE SFH FCEKF+EGLWDTWV+LP GD+L KV E YRKCGYPGA GS DCTH  W
Sbjct:    1 MSRTTAETSFHHFCEKFSEGLWDTWVKLPRGDELKKVEEIYRKCGYPGATGSTDCTHFRW 60          
BLAST of mRNA_L-elsbetiae_contig9257.18269.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.860e-29
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   10 QVIVALKVLASGCCFQDAASCTLMSRTTAEVSFHRFCEKFTEGLWDTWVQLPVGDDLDKVAEEYRKCGYPGAVGSLDCTHLAW 258
            QV+  L+ L  G CF D A+ +LMSRTTAE SFHRFC  F  GLW TW++LP G+DL +V   YR  GYPGAVGS+DCTH+ W
Sbjct:    5 QVLGVLQALGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEDLRRVESTYRSLGYPGAVGSIDCTHVPW 87          
BLAST of mRNA_L-elsbetiae_contig9257.18269.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 9.500e-27
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   10 QVIVALKVLASGCCFQDAASCTLMSRTTAEVSFHRFCEKFTEGLWDTWVQLPVGDDLDKVAEEYRKCGYPGAVGSLDCTHLAW 258
            +V+  L+VL  G CF D A+ +LMSRTTAE SFHRFC  F  GLW TW++LP G+ L +V   YR  GYPGAVGS+DCTH+ W
Sbjct:  210 KVLGVLQVLGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEGLRRVESTYRSLGYPGAVGSIDCTHVPW 292          
BLAST of mRNA_L-elsbetiae_contig9257.18269.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.540e-24
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   10 QVIVALKVLASGCCFQDAASCTLMSRTTAEVSFHRFCEKFTEGLWDTWVQLPVGDDLDKVAEEYRKCGYPGAVGSLDCTHLAW 258
            +V+  L+VL  G CF D A  +LMSR TAE SFHRFC+ F+ GLW  WV LP G+ L KVA EY   G PGAV S+DCTH++W
Sbjct:  112 KVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKVAGEYGDMGCPGAVASVDCTHISW 194          
BLAST of mRNA_L-elsbetiae_contig9257.18269.1 vs. uniprot
Match: A0A6H5KVL5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.030e-24
Identity = 48/75 (64.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   25 LKVLASGCCFQDAASCTLMSRTTAEVSFHRFCEKFTEGLWDTWVQLPVGDDLDKVAEEYRKCGYPGAVGSLDCTH 249
            LKVLASGCCFQD AS +LMSRTTAE SFH FCEKF+EGLWDTWV+LP GD+  K     ++ GY   V    C H
Sbjct:    4 LKVLASGCCFQDVASFSLMSRTTAETSFHHFCEKFSEGLWDTWVKLPGGDEFKKNTHTGKE-GYTSLVVECTCDH 77          
BLAST of mRNA_L-elsbetiae_contig9257.18269.1 vs. uniprot
Match: A0A6H5K1K5_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.680e-24
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   79 MSRTTAEVSFHRFCEKFTEGLWDTWVQLPVGDDLDKVAEEYRKCGYPGAVGSLDCTHLAW 258
            MS  TAE SFH FCEKF+  LWDTWV+LPVGD+L +V   +RK GYPGA+GS DCTH  W
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPGAIGSTDCTHFRW 60          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9257.18269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJD5_9PHAE8.580e-4174.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2S9_9PHAE5.140e-3674.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHV5_9PHAE9.300e-3476.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGV3_9PHAE1.540e-3276.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT09_9PHAE1.970e-3078.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY35_9PHAE1.860e-2960.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE9.500e-2759.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE1.540e-2457.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVL5_9PHAE4.030e-2464.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K1K5_9PHAE6.680e-2466.67Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9257contigL-elsbetiae_contig9257:7683..7940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816997.440323-CDS-L-elsbetiae_contig9257:7682..79401622816997.440323-CDS-L-elsbetiae_contig9257:7682..7940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9257 7683..7940 +
1691683970.9606838-CDS-L-elsbetiae_contig9257:7682..79401691683970.9606838-CDS-L-elsbetiae_contig9257:7682..7940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9257 7683..7940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9257.18269.1prot_L-elsbetiae_contig9257.18269.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9257 7683..7940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9257.18269.1

>prot_L-elsbetiae_contig9257.18269.1 ID=prot_L-elsbetiae_contig9257.18269.1|Name=mRNA_L-elsbetiae_contig9257.18269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
ALPQVIVALKVLASGCCFQDAASCTLMSRTTAEVSFHRFCEKFTEGLWDT
WVQLPVGDDLDKVAEEYRKCGYPGAVGSLDCTHLAW
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mRNA from alignment at L-elsbetiae_contig9257:7683..7940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9257.18269.1 ID=mRNA_L-elsbetiae_contig9257.18269.1|Name=mRNA_L-elsbetiae_contig9257.18269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=258bp|location=Sequence derived from alignment at L-elsbetiae_contig9257:7683..7940+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCTGCCGCAGGTTATTGTAGCTCTGAAGGTGTTGGCCTCTGGCTGCTG CTTCCAGGATGCGGCAAGCTGCACTCTCATGAGTCGCACCACCGCGGAAG TTTCGTTCCACCGCTTCTGCGAGAAGTTTACGGAGGGTCTGTGGGACACT TGGGTGCAGCTGCCTGTGGGCGACGACCTCGACAAGGTGGCGGAGGAGTA CCGCAAGTGCGGTTATCCCGGGGCAGTGGGATCCCTGGACTGCACACATT TGGCGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9257:7683..7940+

>mRNA_L-elsbetiae_contig9257.18269.1 ID=mRNA_L-elsbetiae_contig9257.18269.1|Name=mRNA_L-elsbetiae_contig9257.18269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig9257:7683..7940+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCTGCCGCAGGTTATTGTAGCTCTGAAGGTGTTGGCCTCTGGCTGCTG
CTTCCAGGATGCGGCAAGCTGCACTCTCATGAGTCGCACCACCGCGGAAG
TTTCGTTCCACCGCTTCTGCGAGAAGTTTACGGAGGGTCTGTGGGACACT
TGGGTGCAGCTGCCTGTGGGCGACGACCTCGACAAGGTGGCGGAGGAGTA
CCGCAAGTGCGGTTATCCCGGGGCAGTGGGATCCCTGGACTGCACACATT
TGGCGTGGGCGCTGCCGCAGGTTATTGTAGCTCTGAAGGTGTTGGCCTCT
GGCTGCTGCTTCCAGGATGCGGCAAGCTGCACTCTCATGAGTCGCACCAC
CGCGGAAGTTTCGTTCCACCGCTTCTGCGAGAAGTTTACGGAGGGTCTGT
GGGACACTTGGGTGCAGCTGCCTGTGGGCGACGACCTCGACAAGGTGGCG
GAGGAGTACCGCAAGTGCGGTTATCCCGGGGCAGTGGGATCCCTGGACTG
CACACATTTGGCGTGG
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