mRNA_L-elsbetiae_contig9235.18253.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9235.18253.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI) HSP 1 Score: 128 bits (322), Expect = 4.230e-28 Identity = 140/427 (32.79%), Postives = 178/427 (41.69%), Query Frame = 3 Query: 3 IDRLLRAGATPANGSAGWRGCRRRTLLDAAALGGNDDVVSALLQAGCRPDVNNVSSSSRRSALYQSTVGKHEAAARRLLIYCRGRRQLRGTHQWKHSPL-----CRCCDCATR*--SGARPTHCWSQPEHSHNAPAYSTARRC*AG--------PREDCVGHVG----------HSEYRQGCSRQPWVFTAHASLL**SPG---HGE---------GPLTRRR*SQHKGPR*QLFSAGHGG*WRDSIRRCSSP*LWG*RKYCWRFVEHSTRRCFLRSGRLCSSTP*CWS*SRT*RYFRRNSSPFWR*ARQRRSPRPLEVGSRPQPEDL*RIYGIDLTAGGDNGNMDDIVGLLLRWGASEQAMNDEGKTSAGLLR--QLRDERGWKMDELEW-----ALDLLASAPADRAWRRRCLLVMLRARVDKER 1151 +DRLL+AG +G AGWRGCR R+LLDAAALGGN V+SALLQAGC PDVN V+SS+ RSALYQS +GKHEAAAR+L++ G K PL C D +GA P + + H P ++ A++ A P D GHV ++ R S VF A + HG PL G L AG D +CS + + LR G T + GS + L + + DD V +LLR GASEQA++ GK L + Q R + M + EW A++LLA APADR WRRRC L+MLR R +KER Sbjct: 48 VDRLLKAGV---DGKAGWRGCRGRSLLDAAALGGNAGVMSALLQAGCGPDVNVVASSTGRSALYQSVLGKHEAAARKLILA--GADVNFVDRADKAGPLFAAVKAGCDDLVGNLLMAGANP-NVIVRHSFGHGTPLHAAAKQGLANTASVLLSSPSTDKNGHVATVKVLLAAGADTDIRDLDSHSALVFAAQYERIDVMKALLEHGVDVNVGEDHWNPLHWAAQFNSTGCITVLLDAG-----ADIDVKCSFLDGRTSLHFAAETGNNEALLALLRRGANVHQT--------------------------------TDDGST----------ALHLVSEMEGHAPDDTVDILLRRGASEQAVDRNGKAPVDLFKRVQRRFQSARPMGDSEWPELERAIELLARAPADRTWRRRCWLIMLRERTNKER 421
BLAST of mRNA_L-elsbetiae_contig9235.18253.1 vs. uniprot
Match: A0A6H5KE43_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE43_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.040e-22 Identity = 127/388 (32.73%), Postives = 162/388 (41.75%), Query Frame = 3 Query: 3 IDRLL-RAGATPANGSAGWRGCRRRTLLDAAALGGNDDVVSALLQAGCRPDVNNVSSSSRRSALYQSTVGKHEAAARRLLIYCRGRRQLRGTHQWKHSPLCRCCDCATR*SGARPTHCWSQPEHSHNAPAYSTARRC*AGPREDCVGHVGHSEYRQGCSRQPWVFTAHASLL**SPGHGEGPLTRRR*SQHKGPR*QLFSAGHGG*WRDSIRRCSSP*---LWG*RKYCWRFVEHSTRRCFLRSGRLCSSTP*CWS*SRT*RYFRRNSSPFWR*ARQRRSPRPLEVGSRPQPEDL*RIYGIDLT--AGGDNGNMDDIVGLLLRWGASEQAMNDEGKTSAGLLRQLRDERGWKMDELEWALDLLASAPADRAWRRRCLLVMLRARVDKE 1148 +DRLL +AGA N GWRGCR RTLLDAAALGGN V+ ALLQAGC PDVN V++S+ RSALYQS VGK EAAARRL+++ G K PL G R S+AR AGPRE G V + Q Q W + ++ P R S ++ + ++ R+S Y V H T L +C++ R R++++PF AR + L + R D G A NM D V +L+RWGASEQ ++ +G T A + RAWRRRC L MLR R KE Sbjct: 89 VDRLLLKAGA---NYLEGWRGCRGRTLLDAAALGGNAHVMPALLQAGCGPDVNAVAASTGRSALYQSIVGKQEAAARRLVVF--GADVNFEDRANKAGPLIAAIQMPINWLGRRN----------------SSARCRWAGPREHGFGAVELFQDGQERPEQRWAIPSDDGVI---------PWPRVPMSTYEALPTPIAASLALALERESAATAMVKHGLVANADDGYGSFSVVHWTA---LMDHAVCAAALVDAGADIDPRSGRKDAAPFLLAARAGSNGALLALLRRGASVDQTTNNGSTALHIAANSGENMGDTVDILMRWGASEQTVDQQGSTPADVFT--------------------------RAWRRRCWLAMLRGRTKKE 417
BLAST of mRNA_L-elsbetiae_contig9235.18253.1 vs. uniprot
Match: A0A6H5JE18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE18_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.280e-21 Identity = 126/400 (31.50%), Postives = 151/400 (37.75%), Query Frame = 3 Query: 3 IDRLLRAGATPANGSAGWRGCRRRTLLDAAALGGNDDVVSALLQAGCRPDVNNVSSSSRRSALYQSTVGKHEAAARRLLIYCRGRRQLRGTHQWKHSPLCRCCDCATR*SGARPTHCWSQPEHSHNAPAYSTARRC*AGPREDCVGHVGHSEYRQGCSRQPWVFTAHASLL**SPGHGEGPLTRRR*SQHKGPR*QLFSAGHGG*WRDSIRRCSSP*LWG*RKYCWRFVEHSTRRCFLRSGRLCSSTP*CWS*SRT*RYFRRNSSPFWR*ARQRRSPRPLEVGSRPQPEDL*RIYGIDLTAGGDNGNM----------------DDIVGLLLRWGASEQAMNDEGKTSAGLLRQLRDERGWKMDELEWALDLLASAPADRAWRRRCLLVMLRARVDKERL 1154 + +LL AGA G AGW GC RTLLDAAALGGN DVV+ALL+AGC PDVN VS SSRRSA + S V HEAAAR+L+ L G + P +C +G HC S A+ AR D +G YR RQ V + P + L R + P GH ST + L +G S P R +S G N D IV LLLRW SE +++ G T A LL E+E A LLA+ PADRAWRRR LVMLRAR + ER+ Sbjct: 35 VKKLLNAGA---GGGAGWSGCHGRTLLDAAALGGNPDVVTALLRAGCLPDVNAVSVSSRRSAWHLSAVCGHEAAARKLI--------LAGADADRVDPAEKCGPLHVAAAGG---HC-SLVGDLLIGGAHPNAR--------DLLGRT--PLYRAAYMRQDMVVAVLTDM----PSTDKDILDYRELT----PLMVALQRGH----------------------------LSTNKTLLNAGADVSIRP------------RHENSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCMSNQAGAVSVAPGMFMAPGFDAIVDLLLRWEVSELTLDNAGSTPAALLSVAEGSSSRTAREVERAHALLANTPADRAWRRRSWLVMLRARTEGERV 361
BLAST of mRNA_L-elsbetiae_contig9235.18253.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI) HSP 1 Score: 109 bits (272), Expect = 1.340e-21 Identity = 133/426 (31.22%), Postives = 162/426 (38.03%), Query Frame = 3 Query: 3 IDRLLRAGATPANGSAGWRGCRRRTLLDAAALGGNDDVVSALLQAGCRPDVNNVSSSSRRSALYQSTVGKHEAAARRLLIYCRGRRQLRGTHQWKHSPLCRCCDCATR*SGARPTHCWSQPEHSHNAPAYSTARRC*AGPR-EDCVGHVG-HSEYRQGCSRQPWVFTAHAS----LL**SPGHGEGPLTRRR*SQHKGPR*QLFSAGHGG*WRDSIRRCSSP*LW------------------G*RKYCWRFVEHST-------------------RRCFLRSGRLCSSTP*CWS*SRT*RYFRRNSSPFWR*ARQRRSPRPLEVGSRPQPEDL*RIYGIDLTAGGDNGNMDDIVGLLLRWGASEQAMNDEGKTSAGLLRQLRDERGWKMDELEWALDLLASAPADRAWRRRCLLVMLRARVDKER 1151 +++LL AGA +G AGW GCR RTLLDAAALGGN DVV+ LL+AGC PDVN VS SSRRSAL+ S V HEAAAR+L+ L G A R A P D +G H G V T S +L S G PLT H L +AG R R K+ + + R+C+ S LC + S RR S P + + + + + G D IV LLLRWG SE ++ G T A LL K E+E A LLA+APADRAWRRR LVMLRAR ++ER Sbjct: 48 VEKLLNAGA---DGGAGWSGCRGRTLLDAAALGGNPDVVTTLLRAGCLPDVNVVSVSSRRSALHLSAVCGHEAAARKLI--------LAGAD-------------ANRVDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXPNARDLLGRTPLHRAAYMGQDMVVAVLTDMPSTDKDILDKS---GLSPLTVASQRGHLSTVKTLLNAGADVSMRTGHRNSXXXXXXXXXXXXXXXXXXXXXXXVNASKHGYTALHAGCAMNQAGAMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQV-----------------SGPMDKTMLHLACMTMAPG-----FDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSRKAREVERAHVLLANAPADRAWRRRSWLVMLRARTERER 424
BLAST of mRNA_L-elsbetiae_contig9235.18253.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.630e-21 Identity = 135/431 (31.32%), Postives = 181/431 (42.00%), Query Frame = 3 Query: 3 IDRLLRAGATPANGSAGWRGCRRRTLLDAAALGGNDDVVSALLQAGCRPDVNNVSSSSRRSALYQSTVGKHEAAARRLLIYCRGRRQ---------LRGTHQWKHSPLCR------CCDCATR*SGARPTHCWSQPEHSHNAPAYSTARRC*AGPREDCVGHVGHSEYRQG-----CSRQPWVFTAHASLL**SPGHGEGPLTRRR*SQHKGPR*QLFSAGHGG*WRDSIRRCSSP*LWG*RKYCWRFVEHSTRR----CFLRSGR--LCSSTP*CWS*SRT*RYFRRNSSPFWR*ARQRRSPRPLEVGSRPQPEDL*RIYGIDLTAGGDNGNMDDIVGLLLRWGASEQAMNDEGKTSAGLLR------QLRDERG------------WKMD----ELEWALDLLASAPADRAWRRRCLLVMLRARVDKER 1151 ++RLL AGA NG AGWRGCR RT+LDAAALGGN DVV+ LL +GC DVN VS SSRRSAL+ ++V HEAAA++L+I + L + +H L C + SG P H + S N ST A D + G S CS + A A + G +T + KG + + G ++R + Y + H+ L +G + P + NS L+ G + + + LT G + MD +V LLLRWGASE A+N G T + +L+ RD G + D E++ A LLA APADR WRRRC LVMLRAR ++ R Sbjct: 50 VERLLNAGA---NGGAGWRGCRGRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLIIAGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAA---SGNNRVVSTLLGN-AMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENG---GNVRATDT--------YGLTALHHARGAQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEA--------VVALLKRGGNVNDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARVLLARAPADRTWRRRCWLVMLRARAERGR 454
BLAST of mRNA_L-elsbetiae_contig9235.18253.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 3.050e-18 Identity = 120/407 (29.48%), Postives = 155/407 (38.08%), Query Frame = 3 Query: 3 IDRLLRAGATPANGSAGWRGCRRRTLLDAAALGGNDDVVSALLQAGCRPDVNNVSSSSRRSALYQSTVGKHEAAARRLLIYCRGRRQLRGTHQWKHSPLCRC----CDCATR*SGARPTHCWSQPEHSHNAPAYSTARRC*AGPREDCVGHVGHSEYRQGCSRQPWVFTAHASLL**SPGHGEGPLTRRR*SQHKGPR*QLFSAGHGG*WRDSIRRCSSP*LWG*RKYCWRFVEHSTRRCFLRSGRLCSSTP*CWS*SRT*R-----------------YFRRNSSPFWR*ARQRRSPRPLEVGSRPQPEDL*RIYG---IDLTAGGDNGNMDDIVGLLLRWGASEQAMNDEGKTSAGLLRQLRDERGWKMDELEWALDLLASAPADRAWRRRCLLVMLRARVDKER 1151 +++LL+AGA +G AGWRGC RTLLDAA GGN V+SALLQAGC PD N ++ S+ RS LYQS + +A AR L++ G K PL CD A G + + V S T +L+ G PL H L +AG R+ CS+ G + +P W+ F N L + SR D G + L +DD V LLRWGASEQA+++ +T L ++ E W+ EL+ AL+LLA APADRAWRRR LVML R KER Sbjct: 50 VNKLLKAGA---DGEAGWRGCGDRTLLDAALSGGNAGVMSALLQAGCGPDANVLAPSTGRSVLYQSILSNQKAVARELILA--GADVNIKDRAEKAGPLLAAVRAGCDDLXXXXXXXXXXXXXXXXXXXXXXXXXXA-----GMNKAKIVSVLLSS----------PMTDKDALV-----DGYTPLMVAAEQGHVATVKVLLAAGADVDVREVDYSCSAXXXXXXXXXXXXXXXXXXXXXXANEGVIDDQSPLHWAAGHNRPDCVAVLLDAGANINGRCNFLDNHXXXXXXXXXXXXEALLALLSRGARVDEKTDDGSTALHLAGHARGYKVDDTVDTLLRWGASEQAVDENDETPVDRLTEVAREVVWEWPELDRALELLARAPADRAWRRRGWLVMLHERTKKER 431
BLAST of mRNA_L-elsbetiae_contig9235.18253.1 vs. uniprot
Match: A0A6H5JY41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY41_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 5.690e-18 Identity = 122/430 (28.37%), Postives = 161/430 (37.44%), Query Frame = 3 Query: 3 IDRLLRAGATPANGSAGWRGCRRRTLLDAAALGGNDDVVSALLQAGCRPDVNNVSSSSRRSALYQSTVGKHEAAARRLLIYCRGRRQLRGTHQWKHSPLCRCCDCATR*SGARPTHCWSQPEHSHNAPAYSTARRC*AGPREDCVGHVG-HSEYRQGCSRQPWVFTAHASL-L**SPGHGEGPLTRRR*SQHKGPR*QLFSAGHGG*WRDSIRRCSSP*LWG*RKYCWRFVEHSTRRCFLRSGRLCSSTP*CWS*SRT*RYFRRNSSPFWR*ARQRRSPRPLEVGSRPQPEDL*RIYG-----------------IDLTAGGDNGN--------------------MDDIVGLLLRWGASEQAMNDEGKTSAGLLRQLRD--------ERGWKMDELEWALDLLASAPADRAWRRRCLLVMLRARVDKER 1151 ++RLL AGA +G AGWRGCR RT+LDAAALGGN DVV+ LL++ C PDVN VS SS+RSAL+ + HEAAAR L+I G + P+ R P H ++ H Y T C VG H G +R A+ + G PL + H+ L AG D+ RR + F + G + + + A + ++V + L G N N +D VGLLLRW A A++ G+T + L R +E++ AL LLA APADR WRRRC L MLRAR +ER Sbjct: 50 VERLLEAGA---DGGAGWRGCRSRTMLDAAALGGNADVVTKLLRSECVPDVNVVSVSSKRSALHLAVTWSHEAAARTLMIA--------GADNHRVDPVNR----------YTPFHVAAEGGHDDLVDNYLTGGAC--PNSRSRVGRTPLHLADGLGNNRDVSALLGDANTHMDALDNDGFSPLMLASRNGHRSTVEVLLRAG-----ADTTRRATDS---------GDFSHMAALDVAAAQGHVRVVKAILGNGGDASAVDDHGCTALHYAALHKHGGEVVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXDEAMVTLVKRGGNVNENTSNGVSVLHWACAIPRPGVDRAVGLLLRWEAFAAALDSRGETPSNHLELAAALFAGTSAAPRNSVREEIQRALVLLARAPADRTWRRRCWLAMLRARAGRER 442
BLAST of mRNA_L-elsbetiae_contig9235.18253.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 2.090e-17 Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 3 Query: 3 IDRLLRAGATPANGSAGWRGCRRRTLLDAAALGGNDDVVSALLQAGCRPDVNNVSSSSRRSALYQSTVGKHEAAARRLLI 242 ++RLL+AGA + AGWRGCR RTLLDAAALGGN DV+SAL++ G DVN V+ SSRRSAL+ +T HEAAA+RL++ Sbjct: 50 VERLLQAGA---DAGAGWRGCRGRTLLDAAALGGNADVMSALIRGGAGADVNKVTVSSRRSALHTATCCGHEAAAKRLVL 126
BLAST of mRNA_L-elsbetiae_contig9235.18253.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 3.060e-17 Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 3 Query: 3 IDRLLRAGATPANGSAGWRGCRRRTLLDAAALGGNDDVVSALLQAGCRPDVNNVSSSSRRSALYQSTVGKHEAAARRLL 239 ++ LL AGA +GSAGW+GCR RTL+DAAALGG++ VVSALL+AG +PDVN VS SS+RS+LY +TV H+ AARRL+ Sbjct: 50 VNSLLEAGA---DGSAGWKGCRGRTLIDAAALGGSEPVVSALLRAGAQPDVNVVSVSSKRSSLYTATVCGHKDAARRLI 125
BLAST of mRNA_L-elsbetiae_contig9235.18253.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 7.240e-17 Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 3 Query: 3 IDRLLRAGATPANGSAGWRGCRRRTLLDAAALGGNDDVVSALLQAGCRPDVNNVSSSSRRSALYQSTVGKHEAAARRL 236 ++ LL AGA +GSAGWRGC RTL+DAAALGG++ VVSALL+AG +PDVN VS SS+RSALY +TV HE AAR L Sbjct: 50 VNSLLEAGA---DGSAGWRGCLDRTLIDAAALGGSEPVVSALLRAGAQPDVNTVSISSKRSALYTATVCGHEHAARGL 124 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9235.18253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9235.18253.1 >prot_L-elsbetiae_contig9235.18253.1 ID=prot_L-elsbetiae_contig9235.18253.1|Name=mRNA_L-elsbetiae_contig9235.18253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=246bp MKPQRAGCLSIAGADDNYEEPTNGNTPLCAAAVIARQDSLVRDQLIAGASback to top mRNA from alignment at L-elsbetiae_contig9235:3069..6808- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9235.18253.1 ID=mRNA_L-elsbetiae_contig9235.18253.1|Name=mRNA_L-elsbetiae_contig9235.18253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3740bp|location=Sequence derived from alignment at L-elsbetiae_contig9235:3069..6808- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9235:3069..6808- >mRNA_L-elsbetiae_contig9235.18253.1 ID=mRNA_L-elsbetiae_contig9235.18253.1|Name=mRNA_L-elsbetiae_contig9235.18253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1476bp|location=Sequence derived from alignment at L-elsbetiae_contig9235:3069..6808- (Laminarionema elsbetiae ELsaHSoW15)back to top |