mRNA_L-elsbetiae_contig9209.18230.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9209.18230.1
Unique NamemRNA_L-elsbetiae_contig9209.18230.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: A0A6H5JJ70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ70_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 1.780e-65
Identity = 203/415 (48.92%), Postives = 239/415 (57.59%), Query Frame = 1
Query:   10 VWAECTGGLVGVMSGDGTVCCLEACGLCGGEGCSDVEGT-AETDCCVNDIRETGRTCGVDGVIAPCAIDPD-------------APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDA-----------------------------------PAPGSISTCSNGYPGFQSNEACCSEFCGQCGGTGCGALGSADCCFDNIIAGDRVCDVNAFEAPCIIVDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSR-EVEVPTTAPVSAGDGDGGDAPSEXXXXXXXXAETPAPTVEACAEGLEGHRHGIICCPLGCGQCGGSGCENLPGGETACCSEYILRMGERCSDEVLAPCIIG 1104
            V AEC  G+ G++S +  VCC+ ACG+CGG GCSDVEGT   +DCCV+DI ++  TCGVD  +APC +DPD             AP XXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXX                 P A                                   P  G+ S C NGYPG+QSNEACCSEFCGQCGG+GCG LGSA CC+DNII+   VC V+  EAPCII++ T  PLA G T AP+ A              XXXXXXXXXXXXXXXXXXXXXXXXX      VSR +V VPT +P  +        PS           TPAP+   C +G+EG RHG+ CC + CGQCGG+GCENL GG + CCS  +L     CS+  +APC++G
Sbjct:    3 VEAECVAGVEGILSSNEEVCCIAACGMCGGSGCSDVEGTDGGSDCCVDDILDSDVTCGVDDGVAPCIVDPDIITTPSATEAATPAPAXXXXXXXXXXXXXXXXXXXXXXXTTTAPGQXXXXXXXXIAPSSTSPTESLTATAQPAAAPVVVAAPXXXXXXXXXXXXXXXXXXXAGSFTPVAPVAGASSYCENGYPGWQSNEACCSEFCGQCGGSGCGELGSATCCYDNIISAGLVCGVDVLEAPCIIINYTPAPLAEGVT-APATAXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXVATESPVSRGDVGVPTPSPGGSEAPQESVPPSVTPPVGGAVGTTPAPSAPECDDGIEGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSESGVAPCVLG 411          
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: D7G8G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G7_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 1.240e-51
Identity = 204/420 (48.57%), Postives = 233/420 (55.48%), Query Frame = 1
Query:   88 LCGGEGCSDVEGTAETDCCVNDIRETGRTCGVDGVIAPCAIDPD----------------------------------------APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD----------------------------PDAPAPGSISTCSNGYPGFQSNEACCSEFCGQCGGTGCGALGSADCCFDNIIAGDRVCDVNAFEAPCIIVDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSREVEVPTTAPVSAG-------DGDGGDAPSEXXXXXXXX------AETPAPTVEACAEGLEGHRHGIICCPLGCGQCGGSGCENLPGGETACCSEYILRMGERCSDEVLAPCIIG 1104
            +CGG GCSDV+GT  ++CCV+ I ++  TCGVD  +APC +DPD                                        AP         XXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                             P AP  G+ S C NGY G+Q+NEACCSEFCGQCGG+GCG LGSA CCFDNII   +VC V+  EAPCII++ T  PLA GET AP PA T            XXXXXXXXXXXXXXXXXXXXXXXXX     X        T +PVS G          G +AP E   XXXXX        TPAP+   CA+G+EG RHG+ CC + CGQCGG+GCE L GG   CCS  +L     CS+   APC++G
Sbjct:    1 MCGGSGCSDVDGTRGSECCVDHILDSDVTCGVDDGVAPCIVDPDIITTPSAAEAATPAXXXXXXXXXXXXXXXXXXXTPSMTTTAPGPTATPSMTXXXXXXXXXXXPTPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTPVAPVAGATSNCENGYAGWQNNEACCSEFCGQCGGSGCGELGSATCCFDNIINAGKVCGVDVLEAPCIIINFTPAPLAEGETAAPLPAPTS--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXVAETEXXXXXXXXATESPVSRGGVGTPTSSPGGSEAPQESVAXXXXXPVGGGVGTTPAPSTPECADGIEGFRHGVACCSVSCGQCGGTGCEYLEGGALECCSHDVLTTNSSCSETGEAPCVLG 412          
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.580e-16
Identity = 75/219 (34.25%), Postives = 90/219 (41.10%), Query Frame = 1
Query:   16 AECTGGLVGVMSGDGTVCCLEACGLCGGEGCSDVEGT-AETDCCVNDIRET--GRTCGVDGVIAPCAIDPDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDAPAPGSISTCSNGYPGFQSNEACCSEFCGQCGGTGCGAL----GSADCCFDNIIAGDRVCDVNAFEAPCIIVDITEPP-LAPGETRAP 648
            + C+ G+ GV  GD  VCCLEACG CGGEGC  + GT   +DCC + I+E   G  CG     APC +    P                                                            AP + STCSNG  G+Q    CC E CG+CGG GCG +    GS +CC   I+A   VC     EAPCII   T  P +  G T AP
Sbjct:  290 STCSNGIPGVSDGD--VCCLEACGQCGGEGCGAIAGTNGASDCCPDTIKEESGGVFCGE----APCVMAGFTPSPLNPAFDGTA-------------------------------------------------APVAPSTCSNGIAGYQDGAICCLEICGRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCG----EAPCIIEGYTPAPAVVGGGTTAP 449          
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: A0A6H5JSA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.730e-15
Identity = 61/186 (32.80%), Postives = 77/186 (41.40%), Query Frame = 1
Query:   16 AECTGGLVGVMSGDGTVCCLEACGLCGGEGCSDVEGT-AETDCCVNDIRET--GRTCGVDGVIAPCAIDPDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDAPAPGSISTCSNGYPGFQSNEACCSEFCGQCGGTGCGAL----GSADCCFDNIIA 552
            + C+ G+ GV   DG VCCLEACG CGG GC  + GT   +DCC + I+E   G  CG     APC ++   P                                                            AP + STCSNG PG+Q    CC E CG+CGG GCG +    GS +CC  +I+A
Sbjct:    4 STCSNGIPGVS--DGEVCCLEACGQCGGVGCGAIAGTNGASDCCPDTIKEESGGVFCGE----APCVMEGFTPSPLNPALDGTA-------------------------------------------------APVAPSTCSNGIPGYQDGVICCLEICGRCGGDGCGTIPGTGGSDNCCPSDILA 134          
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.500e-14
Identity = 80/256 (31.25%), Postives = 98/256 (38.28%), Query Frame = 1
Query:  415 SISTCSNGYPGFQSNEA-CCSEFCGQCGGTGCGALGSA------DCCFDNIIAGDRVCDVNAFEAPCIIVDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSREVEVPTTAPVSAG-DGD---GGDAPS------EXXXXXXXXAETPAPTV---EACAEGLEG-HRHGIICCPLGCGQCGGSGCENLPG----GETACCSEYILRMGERCSDEVLAPCIIGT 1107
            S  TCSNG  G  +N   CC   CGQCGGTGC   G+A       CC   + A D  CD    EAPCII                       P+PSP  A                                          T+  +AG DG    GG   +      E          +PAP+    E C+ G+EG   +G++CCPLGCGQCGG+GC         G  +CC   I    E C +   APCIIG+
Sbjct:  189 SARTCSNGLEGIDANGVVCCPLACGQCGGTGCNTSGAAFGLDGSSCCGGGVKASDEYCD-ETNEAPCIIGS--------------------RPTPSPTSANTCSNGLEGIDGNGVVCCPLGCGQCGGTGC-----------NTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGSSPAPSPTPSETCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCIIGS 412          
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.210e-14
Identity = 182/367 (49.59%), Postives = 207/367 (56.40%), Query Frame = 1
Query:   22 CTGGLVGVMSGDGTVCCLEACGLCGGEGCSDVEGTAETD-CCVNDIRETGRTCGVDGVIAPCAIDPDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDAPAPGSISTCSNGYPGFQSNEACCSEFCGQCGGTGC----GALGSADCCFDNIIAGDRVCDVNAFEAPCIIVDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSREVEVPTTAPVSAGDGDGGDAPSEXXXXXXXXAETPAPTVEACAEGLEGHRHGIICCPLGCGQCGGSGCENLPGGETA--CCSEYILRMGERCSDEVLAPCII 1101
            C+ G  G+ SG+   CCL  CG CGG  C  + G    D CC +DI E G  C +  + APC ++  AP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+P         TCSNG+PG QS  ACC   CG CGG+ C    G LG+ +CC  +I+    +C + A EAPC I +                       P+P     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          XXXXXXXX     PT   C+ G  G + G  CC   CG CGGS C+   GG  A  CC   I+  GE CS  + APC I
Sbjct:  524 CSNGFPGIQSGN--ACCLAECGGCGGSDCDALGGGLGADNCCESDIVERGELCSI-ALEAPCYLEEPAPEPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEP-------TDTCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVEHGELCSI-ALEAPCYIDE-----------------------PTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------XXXXXXXXXXXXEPT-GMCSNGFPGIQSGNACCLAECGACGGSDCDEFGGGLGADNCCESDIVEHGELCSIALEAPCYI 844          
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 4.820e-10
Identity = 112/379 (29.55%), Postives = 135/379 (35.62%), Query Frame = 1
Query:   22 CTGGLVGVMSGDGTVCCLEACGLCGGEGCSDV---EGTAETDCCVNDIRETGRTCGVDGVIAPCAID--PDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDAPAPGSISTCSNGYPGFQSNEA-CCSEFCGQCGGTGCGALGSAD------CCFDNIIAGDRVCDVNAFEAPCIIVDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSREVEVPTTAPVSAGDGDGGDAPSEXXXXXXXXAETPAPTVEACAEGLEG-HRHGIICCPLGCGQCGGSGCENLPGGE----TACCSEYILRMGERCSDEVLAPCIIGT 1107
            C+ G  G + G+G VCC   CG C G GCS      G   + CC   I+ +G  C   GV APC     PDA   XXXXXXXXXXXXXX                                                + TCS+G  G   N   CC   CGQC G+GC   G+A+      CC   I +    CD     APCI                                                                          +AP      D GD    XXXXXXXX       V  C++G+EG   +G++CCPLGCGQC GSGC           ++CC   I   G  C D  +APCI G+
Sbjct:  270 CSDGTEG-LDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGV-APCIYGSAPDAGDDXXXXXXXXXXXXXX------------------------------------------------VGTCSDGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGV-APCIY------------------------------------------------------------------------GSAP------DAGDDXXXXXXXXXXXXXX----VGTCSDGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGRIKSSGNYCDDTGVAPCIYGS 515          
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.810e-9
Identity = 107/384 (27.86%), Postives = 129/384 (33.59%), Query Frame = 1
Query:   22 CTGGLVGVMSGDGTVCCLEACGLCGGEGCS---DVEGTAETDCCVNDIRETGRTCGVDGVIAPCAIDPDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDAPAPGSISTCSNGYPGFQSNEA-CCSEFCGQCGGTGCGALGSAD------CCFDNIIAGDRVCDVNAFEAPCIIVDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSREVEVPTTAPVSAGDGDGGDAPSEXXXXXXXXAETPAPT-------VEACAEGLEG-HRHGIICCPLGCGQCGGSGC--ENLPGGETA--CCSEYILRMGERCSDEVLAPCIIGT 1107
            C+ G+ G+  G+G VCC   CG C G GCS      G   + CC   I+ +G  C   GV APC I   AP   XXXXXXXXXX                                                   I TCS+G  G   N   CC   CGQC G+GC   G+A+      CC   I +    CD     APCI                                                                                     G AP+   XXXXXX              V  C++G+EG   +G++CCPLGCGQC GSGC       G T+  CC   I   G  C D  +APCI G+
Sbjct:  470 CSDGIEGI-DGNGVVCCPLGCGQCAGSGCSIAGAANGLTSSSCCGGGIKSSGNYCDDTGV-APC-IYGSAPDTDXXXXXXXXXX---------------------------------------------------IGTCSDGIEGIDGNGVVCCPLGCGQCAGSGCSIAGAANGLTSSSCCGGGIKSSGNYCDDTGV-APCIY------------------------------------------------------------------------------------GSAPNADDXXXXXXXXXXXXXXXXXXXDVGTCSDGIEGIDGNGVVCCPLGCGQCAGSGCGAAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGS 714          
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: D7FZM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.500e-8
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   16 AECTGGLVGVMSGDGTVCCLEACGLCGGEGCSDVEGTA-ETDCCVNDIRETGRTCGVDGVIAPCAI 210
            + C+ GL G    DG  CCL  CGLCGG+GC  V GTA  +DCC + I  + R CG D ++APC I
Sbjct:    5 STCSNGLPGYQ--DGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSARVCGGD-IVAPCII 67          
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.970e-8
Identity = 71/255 (27.84%), Postives = 93/255 (36.47%), Query Frame = 1
Query:  397 DAPAPGSISTCSNGYPGFQSNEA-CCSEFCGQCGGTGCGALGSAD------CCFDNIIAGDRVCDVNAFEAPCII-----VDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSREVEVPTTAPVSAGDG-DGGDAPSEXXXXXXXXAETPAPTVEACAEGLEG-HRHGIICCPLGCGQCGGSGCENLPG----GETACCSEYILRMGERCSDEVLAPCIIGT 1107
            D+ +     TCS+G  G   N   CC   CGQC G GCG  GSA+      CC   + +    CD +  EAPCII      D  +   A  ET+  S                                               +    +    AP   G   D  D  SE            A   + C++G EG   +G++CCP+GCGQC G GC         G  +CC   +  +G  C D   APCIIG+
Sbjct:  328 DSESADETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGGGVKSLGLYCD-DTNEAPCIIGSRPDTDDVDSESA-DETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGSRPDTDDVDSES-----------ADETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGS 569          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JJ70_9PHAE1.780e-6548.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8G7_ECTSI1.240e-5148.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZM1_ECTSI1.580e-1634.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSA0_9PHAE6.730e-1532.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC43_9PHAE1.500e-1431.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ68_ECTSI2.210e-1449.59WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FIS5_ECTSI4.820e-1029.55FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JYT7_9PHAE9.810e-927.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZM0_ECTSI2.500e-850.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G651_ECTSI3.970e-827.84Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9209contigL-elsbetiae_contig9209:1371..6409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue4.2e-17
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_002960.1
Exons6
Model size1108
Cds size1107
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9209.18230.1prot_L-elsbetiae_contig9209.18230.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9209 1371..6409 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816994.231967-CDS-L-elsbetiae_contig9209:1370..14911622816994.231967-CDS-L-elsbetiae_contig9209:1370..1491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9209 1371..1491 -
1691683968.521843-CDS-L-elsbetiae_contig9209:1370..14911691683968.521843-CDS-L-elsbetiae_contig9209:1370..1491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9209 1371..1491 -
1622816994.248238-CDS-L-elsbetiae_contig9209:2161..22251622816994.248238-CDS-L-elsbetiae_contig9209:2161..2225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9209 2162..2225 -
1691683968.533481-CDS-L-elsbetiae_contig9209:2161..22251691683968.533481-CDS-L-elsbetiae_contig9209:2161..2225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9209 2162..2225 -
1622816994.2617357-CDS-L-elsbetiae_contig9209:2684..31131622816994.2617357-CDS-L-elsbetiae_contig9209:2684..3113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9209 2685..3113 -
1691683968.5431612-CDS-L-elsbetiae_contig9209:2684..31131691683968.5431612-CDS-L-elsbetiae_contig9209:2684..3113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9209 2685..3113 -
1622816994.2713401-CDS-L-elsbetiae_contig9209:4132..42101622816994.2713401-CDS-L-elsbetiae_contig9209:4132..4210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9209 4133..4210 -
1691683968.553609-CDS-L-elsbetiae_contig9209:4132..42101691683968.553609-CDS-L-elsbetiae_contig9209:4132..4210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9209 4133..4210 -
1622816994.2816825-CDS-L-elsbetiae_contig9209:4787..50751622816994.2816825-CDS-L-elsbetiae_contig9209:4787..5075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9209 4788..5075 -
1691683968.5640948-CDS-L-elsbetiae_contig9209:4787..50751691683968.5640948-CDS-L-elsbetiae_contig9209:4787..5075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9209 4788..5075 -
1622816994.2945578-CDS-L-elsbetiae_contig9209:6282..64091622816994.2945578-CDS-L-elsbetiae_contig9209:6282..6409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9209 6283..6409 -
1691683968.5738442-CDS-L-elsbetiae_contig9209:6282..64091691683968.5738442-CDS-L-elsbetiae_contig9209:6282..6409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9209 6283..6409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9209.18230.1

>prot_L-elsbetiae_contig9209.18230.1 ID=prot_L-elsbetiae_contig9209.18230.1|Name=mRNA_L-elsbetiae_contig9209.18230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=369bp
MRRVWAECTGGLVGVMSGDGTVCCLEACGLCGGEGCSDVEGTAETDCCVN
DIRETGRTCGVDGVIAPCAIDPDAPPDTPAPSAASTVGATVSTLAPAAAP
VAAPVAAPVDAPAAAPVAAPVQAPVQAPIADPDAPAPGSISTCSNGYPGF
QSNEACCSEFCGQCGGTGCGALGSADCCFDNIIAGDRVCDVNAFEAPCII
VDITEPPLAPGETRAPSPAATLAPSPSPPVAGAAPPTSTPAAAPETAAAT
EAPAAEAAAATAAPVSREVEVPTTAPVSAGDGDGGDAPSEAPAAAGEPAE
TPAPTVEACAEGLEGHRHGIICCPLGCGQCGGSGCENLPGGETACCSEYI
LRMGERCSDEVLAPCIIGT
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mRNA from alignment at L-elsbetiae_contig9209:1371..6409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9209.18230.1 ID=mRNA_L-elsbetiae_contig9209.18230.1|Name=mRNA_L-elsbetiae_contig9209.18230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5039bp|location=Sequence derived from alignment at L-elsbetiae_contig9209:1371..6409- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTCGCGTTTGGGCAGAGTGCACGGGCGGGCTGGTAGGGGTCATGTC CGGCGACGGGACCGTGTGCTGCCTTGAGGCGTGCGGGCTTTGCGGCGGCG AGGGCTGCTCTGACGTGGAGGGCACAGGTGAGGCGGGGCCTATCCTTTTT TGGCGCTTTGCTTTCTCGATTTCTCGACCACAGCAGCCACAGCAGTCCAA GTCGGTGCCCTGTTTTCTGTTTCCCCTCTTTTTTTTTCACCTCGTTTTTT TTCTCCCAAAAGGGTGCACAGGTAGTTGTCTGTCTCTCTCGCACGCACGC GCGGTGCGTGCGCGCGCGCGCGCGCCTTAGGGGAGTCCGTGCTGCGCCTT GGGGGGGGGTGTCATGCAGTAGATACCTGTCGACGGTGCCGTGCCGAGTT CTTGTGCGGGCCGTGGGTCGAGGTCGCGGTCCGACACGGCGGTGTTGTTG ATAGTTTAGTTAAGATAAGTTAAAGCAACGACGACAACAAGACAATCCCC GCGTGGGAGGTCCTCCCACGAGAGAAACATGCCAGCCATTCTGCGCTCTG GCCACACACACACACACCAGAGGCGTGCTCCTTCCCACAATAATACCGGT TTTGTCTTGCCGCGTCCATCTCGGGGGGAAGGACTCGCGTTGCTGTTTGC CTCGTTGAAACTGGGGAAAAGAACGTACTGCTGTAACACATACATACGTT GTCTGCGAGGTGCGGTGATGGAGGGCACGCGAAACCAGAGCTGTGTTCCT GGTGTTTGTTTCCCGCACGCACCCCAAGCAAGCGCTCTCTTGCTGCTTCT AGCTCGCCACGCACCCGTGCGGGTGCTGCCCGTCCACCACCTTCGCCAAA CACCTCCACCCACAGCTCCTTGTAGACGTTTTGCGTGTAACATCTGGAGC GTAAATCGTCCCTCCAACTACGTATGGCACCTATTATCGCCATGTTTGTG GATGCCGTTGTTGTTTGGTCCCTAATGGCGTTGAAACGTGCGACAGGCTG CCCTCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCGTGTTTTGGGTTGGTGGTGGTTTTTTCTCCCCTG TCGGGGGGAAACGGGCCCCGGGGCCCCCCCCCCCCCCCCCCCCCCCCCCC GGCCTCTCGGCCCCATCGTGCTGGCTGGGCCGAAACGACCGCCGCATCTG CGATCGAGGCAGGCTGCCCTCACCCACCCCCCCCCCGACGCTCCCTCTGT ACCTCTCTCCCTCCGTCCGCCTGCTGTTTTCCGCCTGCCTGCTGACTTTA ATTCTTCCCCCGATCGATCGAACGACGAGAGCAGCGGAAACCGACTGCTG CGTCAACGACATCCGGGAGACCGGGCGAACGTGCGGGGTCGACGGCGTGA TCGCCCCGTGCGCGATCGACCCTGACGCTCCCCCCGACACGCCGGCGCCT AGCGCCGCATCGACGGTTGGGGCGACGGTATCTACCCTGGCTCCCGCGGC TGCTCCGGTTGCTGCTCCGGTTGCTGCTCCCGTGGATGCTCCCGCGGCTG CCCCCGTGGCTGCCCCGGTGCAGGCCCCGGTGCAGGCCCCGATAGCTGAT CCGGACGCTCCGGCCCCTGGTTGTGAGTGTAGCGGCTGCGTTTCGGGTTG AGAGAGTATGTATGGGTGAGGTGTTGCAATTTTTTAGTTTTTGTTCCGTT TATTTCCGGTGCTGCTGTGTGGTGTGTTTGCGCTATTTACGAGTATGAGG ATGACCCTCTGTCGTTTGATTGGGTTTTTTCGCCCCCGGATTGGCCAGTG CCCCGAGTGGCGACGCCGCTGTGGAGGGCAGGCGGGCAGGTTGATTGACC CTTGTTTGGTTGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGCGGGGGGG TTGCAGCCTCCCTCGCGGACTCTCTGCCCGTGGTGCCCTCGCCTCACCTC ACGCCTCCGGCGTTCCCTCGACCATGTTGTTCGTCCACGCTCCTCTTCTC GTGTGTTCTTGCCAGAGTTATATCAAGCGCCCGGCGCTCGGCCCCAAGCG TGCTTGCCTTGCTAATACTGTCGGTTGTATGTCCTCCTCGACCCTCCCCC CCGAACACCTGCTGAACTGAACTGAACTGTGCTGTGCTGTGCTGTGCTGT CACGGCAAAATCCATCAACCGCCCCTTCGCGATACGTACACACGTGCAGC GATATCTACCTGCTCGAACGGCTACCCAGGATTTCAGTCCAATGAGGCGT GCTGCTCGGAGTTCTGCGGACAGTGCGGTGGGTTGGGTTTTGCTCTCGAG GTTTTGGGCGTGCATGCATACATGACTCGTTGCCATTTTGCATGTGTCTG CCTGTTGTTTCTCGCATGAATGGGCTCGTATGTAGAGAGGTCTAAATCGC AAAATCCAGCCTCAATTTCTGATGAGGGTATTCTTGTCAGCGGGCGCTGT CTGTACGTCACAATCTCCCCGCACACACATATGCAACATCTGCTCCTCCC ATGAATATATTCCGATACACAAGATGGCAACTATACTGTCTTGTTGAGCC TGTTATTAATACCAGGGGAGATATCACTATACAAATGCCCAGGATAGAAA CAAACCACTCGATTACAACGCCACTGTGTGTACGTGTGTACCCTCACAAA AGGAATACGACTGGACTCAAGAGACAAAAAAAAATCACCAGTCACAGAAA GAACCCTGTACGTATGTAGATATTTACCTAGCAAAAACCACCGAATCACG GCCTGTGGTATCAAAAGTGCTGGGGTCATCAAAAGTTCTGAAAACACACA CGCAACACAGCAGGAGATGTACGGACGCGTGTCTGCGATGATGACACCCC CCCCCCCTCTACGGGGCACAACACCAAAGGGGCGATGTAGGTAGCAGCGA CCTCGAGAAATGATCGTTTTTTTTTTGTTTGGACGAGAGCGGGTCCGATA GGTGCGCGTCACAATATGGAAACGCTGCCTCTAAATAGGGGCGACGATGC AGTAGATACAGCACTGGCGGCTGACATACCCCCACCTCCCCACGATCTCA TGCGTCACCCCCCACGTAACGACGGCAGGCCTCCTTTTTTTTGTCTGGAC GTTTCACGTGCCTTTCCGCCCGCAAAACGCGCTCCCCAGCTTTTGCGCCA ACCTATGCATGTAGCGCACCCACACCCACCCCCACACGCTCACGCACGCA TAATCCAGCACAAAAAAAAAAAAACTCACACATTTCCCCACCGACCGCCT CCCACGCACAAAACACGAACACAAACAACCATGCCTGCCACACCAGGAGG CACCGGATGCGGGGCACTGGGATCGGCCGACTGCTGCTTCGACAACATCA TCGCCGGGGACCGTGTCTGCGACGTCAACGCGTTCGAGGCCCCGTGCATC ATCGTCGACATCACCGAGCCCCCCCTGGCGCCGGGGGAGACCCGCGCGCC GTCCCCTGCCGCGACGCTCGCGCCCTCTCCTTCCCCCCCCGTAGCGGGGG CGGCGCCGCCGACTTCGACACCGGCGGCGGCACCGGAAACGGCGGCAGCG ACGGAAGCTCCGGCGGCGGAGGCGGCGGCGGCTACGGCGGCCCCGGTGTC CCGCGAGGTCGAGGTGCCCACGACGGCGCCGGTGTCGGCTGGGGACGGGG ACGGGGGTGACGCGCCGTCGGAGGCGCCCGCTGCGGCCGGAGAACCGGCG GAGACACCGGCGCCAACCGTCGAAGGTGGGCGCATTTTTGTTTTGTTGTT GCTGAGCTGCGTCGTGCATGCTGTAAGTGAGTTTTTTGTAAGGGCTAGGG GGCTGGGGGGGGGGAAGTAGGCGGGTTTTCCTTTTGTTTTGTTCGCTCTC GGCCTTCTTTCTCCGCTGAAACTCTATTATGTAGTCGTTCGCTTTTTTTT TTCTGTTTGAAATTTTGTCTTGCTAATCTTGCAGCCCCGTTCCCCCTTTT CTGCCCAGCTGTGGCCTTGCCCCCTCCTGTACATGTACATACGCAAATAC TGATTGTCCCATGGTTTTTACAAGAGACACCCCACGCCCTCGTTCGCGTC TGTCTGGCCCCTCGTTTTCGTGTCTCGAAATCGACGTTTTCCAATACATG CGTGCACGGACGTACGTACGTACGTCTCATGTTTCATCTTTTTCATTAAT GCATATCTTTTTTGCCGCGTTTTCCTTTCCTCAGCCTGCGCCGAAGGGTT GGAGGGCCACCGACACGGGATCATTTGCTGTCCTCTCGGATGCGGCCAGT AAGTGAAAATGCAAACGTCGAGCGTAGTAAATACTTCTATGTCCATCATA AGTTACGCACCTTACAATAAAAGTGTTTGTTTTTTTTGGTCTCGGATATT TATGCGGGGATTTCATTCAGTCCACGAGGCTGCTCTTCTTTTTGGTCGAG GTTAAGGTTTGAACCGCCGTATTCGGCCCAAAAAATACTGATACTATAGG CGCCCTAGAGGACCGTCTAGACATGCGTCTGCATCGACCACCTATCTATG TATGTGTCCGTAAAAACGGTTCTTTCAGTTTATCTTAGCTGCTAGTTTAG GCCTTTTAAGGCCACTTCTCTTTGTCGTAAAAATGTTGTTACGTAAAAGT GGGTGCTTGACGTGCTGCTGTAAGCGCGCCCCCTTTTTGAATTAATGTAT ACAAATGTCAGCAATCTTCGTACAGTCTGTGAAAGAAGTCGTTCCAGAGG GAGGGGGACTGTTGTAGGCGTATTGTACTAACCCCCTGTTTCCCATCCCA GAATAAAATCAGTAGTTCAATTAAAAACCGGTCATAATTTATGTGATTTT ACTTCGTAGGTAGTCTATGTATTTAGATATTATTGAAATATTTTTCAACA TCGTAACATATGTGGCACTTTTTTTTTCGTGAACTGCTGTATGTATGCAC TGTTATTGAAACTATGAGGTGCGGAGGCTCGGGGTGTGAGAACCTCCCCG GCGGGGAGACGGCTTGCTGCTCGGAATACATCCTTCGCATGGGCGAGAGG TGCAGCGACGAGGTTCTTGCACCGTGCATCATTGGCACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9209:1371..6409-

>mRNA_L-elsbetiae_contig9209.18230.1 ID=mRNA_L-elsbetiae_contig9209.18230.1|Name=mRNA_L-elsbetiae_contig9209.18230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2214bp|location=Sequence derived from alignment at L-elsbetiae_contig9209:1371..6409- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTCGCGTTTGGGCAGAGTGCACGGGCGGGCTGGTAGGGGTCATGTC
CGGCGACGGGACCGTGTGCTGCCTTGAGGCGTGCGGGCTTTGCGGCGGCG
AGGGCTGCTCTGACGTGGAGGGCACAGATGCGTCGCGTTTGGGCAGAGTG
CACGGGCGGGCTGGTAGGGGTCATGTCCGGCGACGGGACCGTGTGCTGCC
TTGAGGCGTGCGGGCTTTGCGGCGGCGAGGGCTGCTCTGACGTGGAGGGC
ACAGCGGAAACCGACTGCTGCGTCAACGACATCCGGGAGACCGGGCGAAC
GTGCGGGGTCGACGGCGTGATCGCCCCGTGCGCGATCGACCCTGACGCTC
CCCCCGACACGCCGGCGCCTAGCGCCGCATCGACGGTTGGGGCGACGGTA
TCTACCCTGGCTCCCGCGGCTGCTCCGGTTGCTGCTCCGGTTGCTGCTCC
CGTGGATGCTCCCGCGGCTGCCCCCGTGGCTGCCCCGGTGCAGGCCCCGG
TGCAGGCCCCGATAGCTGATCCGGACGCTCCGGCCCCTGGTTCGGAAACC
GACTGCTGCGTCAACGACATCCGGGAGACCGGGCGAACGTGCGGGGTCGA
CGGCGTGATCGCCCCGTGCGCGATCGACCCTGACGCTCCCCCCGACACGC
CGGCGCCTAGCGCCGCATCGACGGTTGGGGCGACGGTATCTACCCTGGCT
CCCGCGGCTGCTCCGGTTGCTGCTCCGGTTGCTGCTCCCGTGGATGCTCC
CGCGGCTGCCCCCGTGGCTGCCCCGGTGCAGGCCCCGGTGCAGGCCCCGA
TAGCTGATCCGGACGCTCCGGCCCCTGGTTCGATATCTACCTGCTCGAAC
GGCTACCCAGGATTTCAGTCCAATGAGGCGTGCTGCTCGGAGTTCTGCGG
ACAGTGCGCGATATCTACCTGCTCGAACGGCTACCCAGGATTTCAGTCCA
ATGAGGCGTGCTGCTCGGAGTTCTGCGGACAGTGCGGAGGCACCGGATGC
GGGGCACTGGGATCGGCCGACTGCTGCTTCGACAACATCATCGCCGGGGA
CCGTGTCTGCGACGTCAACGCGTTCGAGGCCCCGTGCATCATCGTCGACA
TCACCGAGCCCCCCCTGGCGCCGGGGGAGACCCGCGCGCCGTCCCCTGCC
GCGACGCTCGCGCCCTCTCCTTCCCCCCCCGTAGCGGGGGCGGCGCCGCC
GACTTCGACACCGGCGGCGGCACCGGAAACGGCGGCAGCGACGGAAGCTC
CGGCGGCGGAGGCGGCGGCGGCTACGGCGGCCCCGGTGTCCCGCGAGGTC
GAGGTGCCCACGACGGCGCCGGTGTCGGCTGGGGACGGGGACGGGGGTGA
CGCGCCGTCGGAGGCGCCCGCTGCGGCCGGAGAACCGGCGGAGACACCGG
CGCCAACCGTCGAAGGAGGCACCGGATGCGGGGCACTGGGATCGGCCGAC
TGCTGCTTCGACAACATCATCGCCGGGGACCGTGTCTGCGACGTCAACGC
GTTCGAGGCCCCGTGCATCATCGTCGACATCACCGAGCCCCCCCTGGCGC
CGGGGGAGACCCGCGCGCCGTCCCCTGCCGCGACGCTCGCGCCCTCTCCT
TCCCCCCCCGTAGCGGGGGCGGCGCCGCCGACTTCGACACCGGCGGCGGC
ACCGGAAACGGCGGCAGCGACGGAAGCTCCGGCGGCGGAGGCGGCGGCGG
CTACGGCGGCCCCGGTGTCCCGCGAGGTCGAGGTGCCCACGACGGCGCCG
GTGTCGGCTGGGGACGGGGACGGGGGTGACGCGCCGTCGGAGGCGCCCGC
TGCGGCCGGAGAACCGGCGGAGACACCGGCGCCAACCGTCGAAGCCTGCG
CCGAAGGGTTGGAGGGCCACCGACACGGGATCATTTGCTGTCCTCTCGGA
TGCGGCCACCTGCGCCGAAGGGTTGGAGGGCCACCGACACGGGATCATTT
GCTGTCCTCTCGGATGCGGCCAGTGCGGAGGCTCGGGGTGTGAGAACCTC
CCCGGCGGGGAGACGGCTTGCTGCTCGGAATACATCCTTCGCATGGGCGA
GAGGTGCAGCGACGAGGTTCTTGCACCGTGCATCATTGGCACAGTGCGGA
GGCTCGGGGTGTGAGAACCTCCCCGGCGGGGAGACGGCTTGCTGCTCGGA
ATACATCCTTCGCATGGGCGAGAGGTGCAGCGACGAGGTTCTTGCACCGT
GCATCATTGGCACA
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