mRNA_L-elsbetiae_contig9209.18230.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: A0A6H5JJ70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ70_9PHAE) HSP 1 Score: 224 bits (570), Expect = 1.780e-65 Identity = 203/415 (48.92%), Postives = 239/415 (57.59%), Query Frame = 1 Query: 10 VWAECTGGLVGVMSGDGTVCCLEACGLCGGEGCSDVEGT-AETDCCVNDIRETGRTCGVDGVIAPCAIDPD-------------APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDA-----------------------------------PAPGSISTCSNGYPGFQSNEACCSEFCGQCGGTGCGALGSADCCFDNIIAGDRVCDVNAFEAPCIIVDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSR-EVEVPTTAPVSAGDGDGGDAPSEXXXXXXXXAETPAPTVEACAEGLEGHRHGIICCPLGCGQCGGSGCENLPGGETACCSEYILRMGERCSDEVLAPCIIG 1104 V AEC G+ G++S + VCC+ ACG+CGG GCSDVEGT +DCCV+DI ++ TCGVD +APC +DPD AP XXXXXXXXXXXXXXXXXXXXXXX XXXXXXXX P A P G+ S C NGYPG+QSNEACCSEFCGQCGG+GCG LGSA CC+DNII+ VC V+ EAPCII++ T PLA G T AP+ A XXXXXXXXXXXXXXXXXXXXXXXXX VSR +V VPT +P + PS TPAP+ C +G+EG RHG+ CC + CGQCGG+GCENL GG + CCS +L CS+ +APC++G Sbjct: 3 VEAECVAGVEGILSSNEEVCCIAACGMCGGSGCSDVEGTDGGSDCCVDDILDSDVTCGVDDGVAPCIVDPDIITTPSATEAATPAPAXXXXXXXXXXXXXXXXXXXXXXXTTTAPGQXXXXXXXXIAPSSTSPTESLTATAQPAAAPVVVAAPXXXXXXXXXXXXXXXXXXXAGSFTPVAPVAGASSYCENGYPGWQSNEACCSEFCGQCGGSGCGELGSATCCYDNIISAGLVCGVDVLEAPCIIINYTPAPLAEGVT-APATAXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXVATESPVSRGDVGVPTPSPGGSEAPQESVPPSVTPPVGGAVGTTPAPSAPECDDGIEGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSESGVAPCVLG 411
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: D7G8G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G7_ECTSI) HSP 1 Score: 187 bits (476), Expect = 1.240e-51 Identity = 204/420 (48.57%), Postives = 233/420 (55.48%), Query Frame = 1 Query: 88 LCGGEGCSDVEGTAETDCCVNDIRETGRTCGVDGVIAPCAIDPD----------------------------------------APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD----------------------------PDAPAPGSISTCSNGYPGFQSNEACCSEFCGQCGGTGCGALGSADCCFDNIIAGDRVCDVNAFEAPCIIVDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSREVEVPTTAPVSAG-------DGDGGDAPSEXXXXXXXX------AETPAPTVEACAEGLEGHRHGIICCPLGCGQCGGSGCENLPGGETACCSEYILRMGERCSDEVLAPCIIG 1104 +CGG GCSDV+GT ++CCV+ I ++ TCGVD +APC +DPD AP XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P AP G+ S C NGY G+Q+NEACCSEFCGQCGG+GCG LGSA CCFDNII +VC V+ EAPCII++ T PLA GET AP PA T XXXXXXXXXXXXXXXXXXXXXXXXX X T +PVS G G +AP E XXXXX TPAP+ CA+G+EG RHG+ CC + CGQCGG+GCE L GG CCS +L CS+ APC++G Sbjct: 1 MCGGSGCSDVDGTRGSECCVDHILDSDVTCGVDDGVAPCIVDPDIITTPSAAEAATPAXXXXXXXXXXXXXXXXXXXTPSMTTTAPGPTATPSMTXXXXXXXXXXXPTPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTPVAPVAGATSNCENGYAGWQNNEACCSEFCGQCGGSGCGELGSATCCFDNIINAGKVCGVDVLEAPCIIINFTPAPLAEGETAAPLPAPTS--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXVAETEXXXXXXXXATESPVSRGGVGTPTSSPGGSEAPQESVAXXXXXPVGGGVGTTPAPSTPECADGIEGFRHGVACCSVSCGQCGGTGCEYLEGGALECCSHDVLTTNSSCSETGEAPCVLG 412
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 1.580e-16 Identity = 75/219 (34.25%), Postives = 90/219 (41.10%), Query Frame = 1 Query: 16 AECTGGLVGVMSGDGTVCCLEACGLCGGEGCSDVEGT-AETDCCVNDIRET--GRTCGVDGVIAPCAIDPDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDAPAPGSISTCSNGYPGFQSNEACCSEFCGQCGGTGCGAL----GSADCCFDNIIAGDRVCDVNAFEAPCIIVDITEPP-LAPGETRAP 648 + C+ G+ GV GD VCCLEACG CGGEGC + GT +DCC + I+E G CG APC + P AP + STCSNG G+Q CC E CG+CGG GCG + GS +CC I+A VC EAPCII T P + G T AP Sbjct: 290 STCSNGIPGVSDGD--VCCLEACGQCGGEGCGAIAGTNGASDCCPDTIKEESGGVFCGE----APCVMAGFTPSPLNPAFDGTA-------------------------------------------------APVAPSTCSNGIAGYQDGAICCLEICGRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCG----EAPCIIEGYTPAPAVVGGGTTAP 449
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: A0A6H5JSA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 6.730e-15 Identity = 61/186 (32.80%), Postives = 77/186 (41.40%), Query Frame = 1 Query: 16 AECTGGLVGVMSGDGTVCCLEACGLCGGEGCSDVEGT-AETDCCVNDIRET--GRTCGVDGVIAPCAIDPDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDAPAPGSISTCSNGYPGFQSNEACCSEFCGQCGGTGCGAL----GSADCCFDNIIA 552 + C+ G+ GV DG VCCLEACG CGG GC + GT +DCC + I+E G CG APC ++ P AP + STCSNG PG+Q CC E CG+CGG GCG + GS +CC +I+A Sbjct: 4 STCSNGIPGVS--DGEVCCLEACGQCGGVGCGAIAGTNGASDCCPDTIKEESGGVFCGE----APCVMEGFTPSPLNPALDGTA-------------------------------------------------APVAPSTCSNGIPGYQDGVICCLEICGRCGGDGCGTIPGTGGSDNCCPSDILA 134
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.500e-14 Identity = 80/256 (31.25%), Postives = 98/256 (38.28%), Query Frame = 1 Query: 415 SISTCSNGYPGFQSNEA-CCSEFCGQCGGTGCGALGSA------DCCFDNIIAGDRVCDVNAFEAPCIIVDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSREVEVPTTAPVSAG-DGD---GGDAPS------EXXXXXXXXAETPAPTV---EACAEGLEG-HRHGIICCPLGCGQCGGSGCENLPG----GETACCSEYILRMGERCSDEVLAPCIIGT 1107 S TCSNG G +N CC CGQCGGTGC G+A CC + A D CD EAPCII P+PSP A T+ +AG DG GG + E +PAP+ E C+ G+EG +G++CCPLGCGQCGG+GC G +CC I E C + APCIIG+ Sbjct: 189 SARTCSNGLEGIDANGVVCCPLACGQCGGTGCNTSGAAFGLDGSSCCGGGVKASDEYCD-ETNEAPCIIGS--------------------RPTPSPTSANTCSNGLEGIDGNGVVCCPLGCGQCGGTGC-----------NTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGSSPAPSPTPSETCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCIIGS 412
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 2.210e-14 Identity = 182/367 (49.59%), Postives = 207/367 (56.40%), Query Frame = 1 Query: 22 CTGGLVGVMSGDGTVCCLEACGLCGGEGCSDVEGTAETD-CCVNDIRETGRTCGVDGVIAPCAIDPDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDAPAPGSISTCSNGYPGFQSNEACCSEFCGQCGGTGC----GALGSADCCFDNIIAGDRVCDVNAFEAPCIIVDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSREVEVPTTAPVSAGDGDGGDAPSEXXXXXXXXAETPAPTVEACAEGLEGHRHGIICCPLGCGQCGGSGCENLPGGETA--CCSEYILRMGERCSDEVLAPCII 1101 C+ G G+ SG+ CCL CG CGG C + G D CC +DI E G C + + APC ++ AP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+P TCSNG+PG QS ACC CG CGG+ C G LG+ +CC +I+ +C + A EAPC I + P+P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXX PT C+ G G + G CC CG CGGS C+ GG A CC I+ GE CS + APC I Sbjct: 524 CSNGFPGIQSGN--ACCLAECGGCGGSDCDALGGGLGADNCCESDIVERGELCSI-ALEAPCYLEEPAPEPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEP-------TDTCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVEHGELCSI-ALEAPCYIDE-----------------------PTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------XXXXXXXXXXXXEPT-GMCSNGFPGIQSGNACCLAECGACGGSDCDEFGGGLGADNCCESDIVEHGELCSIALEAPCYI 844
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 4.820e-10 Identity = 112/379 (29.55%), Postives = 135/379 (35.62%), Query Frame = 1 Query: 22 CTGGLVGVMSGDGTVCCLEACGLCGGEGCSDV---EGTAETDCCVNDIRETGRTCGVDGVIAPCAID--PDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDAPAPGSISTCSNGYPGFQSNEA-CCSEFCGQCGGTGCGALGSAD------CCFDNIIAGDRVCDVNAFEAPCIIVDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSREVEVPTTAPVSAGDGDGGDAPSEXXXXXXXXAETPAPTVEACAEGLEG-HRHGIICCPLGCGQCGGSGCENLPGGE----TACCSEYILRMGERCSDEVLAPCIIGT 1107 C+ G G + G+G VCC CG C G GCS G + CC I+ +G C GV APC PDA XXXXXXXXXXXXXX + TCS+G G N CC CGQC G+GC G+A+ CC I + CD APCI +AP D GD XXXXXXXX V C++G+EG +G++CCPLGCGQC GSGC ++CC I G C D +APCI G+ Sbjct: 270 CSDGTEG-LDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGV-APCIYGSAPDAGDDXXXXXXXXXXXXXX------------------------------------------------VGTCSDGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGV-APCIY------------------------------------------------------------------------GSAP------DAGDDXXXXXXXXXXXXXX----VGTCSDGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGRIKSSGNYCDDTGVAPCIYGS 515
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 9.810e-9 Identity = 107/384 (27.86%), Postives = 129/384 (33.59%), Query Frame = 1 Query: 22 CTGGLVGVMSGDGTVCCLEACGLCGGEGCS---DVEGTAETDCCVNDIRETGRTCGVDGVIAPCAIDPDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDAPAPGSISTCSNGYPGFQSNEA-CCSEFCGQCGGTGCGALGSAD------CCFDNIIAGDRVCDVNAFEAPCIIVDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSREVEVPTTAPVSAGDGDGGDAPSEXXXXXXXXAETPAPT-------VEACAEGLEG-HRHGIICCPLGCGQCGGSGC--ENLPGGETA--CCSEYILRMGERCSDEVLAPCIIGT 1107 C+ G+ G+ G+G VCC CG C G GCS G + CC I+ +G C GV APC I AP XXXXXXXXXX I TCS+G G N CC CGQC G+GC G+A+ CC I + CD APCI G AP+ XXXXXX V C++G+EG +G++CCPLGCGQC GSGC G T+ CC I G C D +APCI G+ Sbjct: 470 CSDGIEGI-DGNGVVCCPLGCGQCAGSGCSIAGAANGLTSSSCCGGGIKSSGNYCDDTGV-APC-IYGSAPDTDXXXXXXXXXX---------------------------------------------------IGTCSDGIEGIDGNGVVCCPLGCGQCAGSGCSIAGAANGLTSSSCCGGGIKSSGNYCDDTGV-APCIY------------------------------------------------------------------------------------GSAPNADDXXXXXXXXXXXXXXXXXXXDVGTCSDGIEGIDGNGVVCCPLGCGQCAGSGCGAAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGS 714
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: D7FZM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI) HSP 1 Score: 62.8 bits (151), Expect = 2.500e-8 Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1 Query: 16 AECTGGLVGVMSGDGTVCCLEACGLCGGEGCSDVEGTA-ETDCCVNDIRETGRTCGVDGVIAPCAI 210 + C+ GL G DG CCL CGLCGG+GC V GTA +DCC + I + R CG D ++APC I Sbjct: 5 STCSNGLPGYQ--DGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSARVCGGD-IVAPCII 67
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 66.2 bits (160), Expect = 3.970e-8 Identity = 71/255 (27.84%), Postives = 93/255 (36.47%), Query Frame = 1 Query: 397 DAPAPGSISTCSNGYPGFQSNEA-CCSEFCGQCGGTGCGALGSAD------CCFDNIIAGDRVCDVNAFEAPCII-----VDITEPPLAPGETRAPSPAATLAPSPSPPVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSREVEVPTTAPVSAGDG-DGGDAPSEXXXXXXXXAETPAPTVEACAEGLEG-HRHGIICCPLGCGQCGGSGCENLPG----GETACCSEYILRMGERCSDEVLAPCIIGT 1107 D+ + TCS+G G N CC CGQC G GCG GSA+ CC + + CD + EAPCII D + A ET+ S + + AP G D D SE A + C++G EG +G++CCP+GCGQC G GC G +CC + +G C D APCIIG+ Sbjct: 328 DSESADETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGGGVKSLGLYCD-DTNEAPCIIGSRPDTDDVDSESA-DETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGSRPDTDDVDSES-----------ADETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGS 569 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9209.18230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9209.18230.1 >prot_L-elsbetiae_contig9209.18230.1 ID=prot_L-elsbetiae_contig9209.18230.1|Name=mRNA_L-elsbetiae_contig9209.18230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=369bp MRRVWAECTGGLVGVMSGDGTVCCLEACGLCGGEGCSDVEGTAETDCCVNback to top mRNA from alignment at L-elsbetiae_contig9209:1371..6409- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9209.18230.1 ID=mRNA_L-elsbetiae_contig9209.18230.1|Name=mRNA_L-elsbetiae_contig9209.18230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5039bp|location=Sequence derived from alignment at L-elsbetiae_contig9209:1371..6409- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9209:1371..6409- >mRNA_L-elsbetiae_contig9209.18230.1 ID=mRNA_L-elsbetiae_contig9209.18230.1|Name=mRNA_L-elsbetiae_contig9209.18230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2214bp|location=Sequence derived from alignment at L-elsbetiae_contig9209:1371..6409- (Laminarionema elsbetiae ELsaHSoW15)back to top |