mRNA_L-elsbetiae_contig920.18225.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: D8LC03_ECTSI (HET-R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC03_ECTSI) HSP 1 Score: 476 bits (1226), Expect = 1.120e-156 Identity = 338/686 (49.27%), Postives = 408/686 (59.48%), Query Frame = 1 Query: 1 SLSPYPYKRRGFLRRKSAPPTARAFDVGVDSIIRRGSTGTRPLPRTPTFTNEMCGSRDSPMRDSRRGSAPSS-RSASPNKRPWYPAGCRPSSGESGRNGSDDHESTYVVHPTFRHLFDKTANGSDAGG---ARGQNDRGVCGG--GGGVDGRLLRQHRIAVPDAGVGG-SPHPSPQTA-TTAPPRSETDRKARSATGERRRKTANAHLSTKQKNIADNKRQDKPTG------------------------------------SRLTPNDRLPRRKVRNEGRFIEKREGHQHDVYREPVAMVRDRVRDLQSRGKPRSQQNGLSVDD----RGRVGPVFPSSAVFTGHSEQVLALAQHKDVMFSAAADGTAKAWDTYSQQCLATYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAQPLHVIDLHSAVRDLVVVGSFLAVATSNPAIEVIDLNRMKPHGTLEGHIMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVWGRVGGGSDVG--EWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIWAPSTRIGEVNGMDVTD----GGGETASEQHQQHQRWECVGGVRGAAGAVGTVLMHEEALAFGTSESLIARFPLQLCMPKR 1896 S SP PYKRRG LRR P R FD+ +S STG RP T + + SP +S SAP + RS SP+KRPWYPA RPSS ++G +G+DD S YVVHP+FRHLF + A+ S A +R +G G GGGV G R VGG P S T TT RSE + AT R R H S + + + +R+D TG +RL ND R++ + ++ + Q + VA +R RVRD+Q+R +PR Q+ G + RG P SSAVF GHSEQVLALA+ +D++FSA+ADGTAKAWDT SQQCLATY XXXXXXXXXXXXXXXX TAQ L V+DL SAVRD+V+VG FLAVATSNP IE+++L RM+ HGTLEGH++AVSALASL + LLVSGSHDTF+RVWDPDT +AVL GHGGT+GA+CT+ W P A R E E+LIVSGSGD + RVWG+ G G D G EW CRAVLEGHRHGVWA +G SLSG FATGGGDATVK+WAP+T +G + + G GE+ + WE VGGVRG AGAVG VL+ E+AL FGTSE+LIARFPLQLCMP R Sbjct: 36 STSPNPYKRRGLLRRIDPQPQ-RKFDIDRNS----SSTGVRPPSLTSPTSTSVAPGGGSPSWNSL--SAPGTPRSNSPSKRPWYPASRRPSSRDNGESGADD--SAYVVHPSFRHLFTERAHSSSANDPSRSRQVYSQGPHHGASGGGVSGGENSGRRPGTAVFSVGGWDPSYSSSTKETTVARRSERPGEVEPATAGRWR---GVHFSKAKHSPPEQQRRDTTTGIGSAPDASSRQRGGERASFSPTDRWSGFGSKSDASPARLRSNDHRSPREMGGQRPYVGRETVEQEGAPLKTVAAMRGRVRDMQARRRPRRQERGGRMPPADSRRGEGDPKLRSSAVFIGHSEQVLALARCEDILFSASADGTAKAWDTCSQQCLATYKGHHGAVWGMQVTGRXXXXXXXXXXXXXXXXETAQSLSVLDLRSAVRDVVMVGDFLAVATSNPGIEIVELKRMRRHGTLEGHLLAVSALASLEGENLLVSGSHDTFIRVWDPDTLTSKAVLGGHGGTVGAICTVSW--PQGGHDHAKRAAE-----EALIVSGSGDGTARVWGQQGVG-DKGQREWTCRAVLEGHRHGVWAVYGSSLSGAFATGGGDATVKLWAPTTTNNAEHGNEEAERGNLGSGESRHQXXXXXXXWELVGGVRGTAGAVGAVLIDEQALVFGTSEALIARFPLQLCMPAR 701
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A6H5JEV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV4_9PHAE) HSP 1 Score: 145 bits (367), Expect = 2.280e-34 Identity = 135/370 (36.49%), Postives = 179/370 (48.38%), Query Frame = 1 Query: 1 SLSPYPYKRRGFLRRKSAPPTARAFDVGVDSIIRRGSTGTRPLPRTPTFTNEMCGSRDSPMRDSRRGSAPSS-RSASPNKRPWYPAGCRPSSGESGRNGSDDHESTYVVHPTFRHLFDKTANGSDAGGARGQND-------RGVCGGGGGVDGRLLRQHRIAVPDAGVGGSPHPSPQTATTAPPRSETDRKARSATGERRRKTANAHLSTKQKNIADNKRQD------------------------KPTGSRL---TPNDRLPRRKVRNEGR----------FIEKREGHQHDVYREPVAMVRDRVRDLQSRGKPRSQQNGLSV---DDRGRVGPVFPSSAVFTGHSEQVLALAQHKDVMFSAAADGTAK 966 S+S PYKRRG LRR+ P R FD+ +S S G RP T + + +SP +S S P + RS SPNKRPWYPAG RPSS +SG +G+DD S YVVHP+FRHLF ++A+ S A G GGG R+ AV G G + S T TT +SE + A R R AH S + N + + ++ PTG + +D P R RN+ R + E+ Q EPVA +R RVRD+Q+RG+PR ++ G + D R G S+VF GHS+QVLALA+ +D++FSA+ADGTAK Sbjct: 36 SMSSNPYKRRGLLRRRDPQPQ-RKFDIDRNS----SSAGVRPPLLTSPVSTSVAPGGESPSWNSL--SVPGTPRSNSPNKRPWYPAGRRPSSRDSGESGADD--SAYVVHPSFRHLFTESAHSSGANDPSRSRQVYSQGPHHGSSRGGGSXXENSGRRPGTAVFSVGGGDPSYSSSTTETTVARQSERSGEVEPAAAGRWR---GAHFSKAEHNPREQQHRNTTTTGIGSAPDASSRQRGGERASFSPTGRSSVFGSESDASPPRPRRNDHRSPREMGGQRPYAERETVEQGGAPLEPVAAMRSRVRDMQARGRPRRKERGGRMPPADSRRGEGDPRLRSSVFIGHSKQVLALARREDILFSASADGTAK 393
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: UPI001FB17D18 (transducin beta-like protein 3 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB17D18) HSP 1 Score: 76.6 bits (187), Expect = 8.950e-11 Identity = 54/190 (28.42%), Postives = 88/190 (46.32%), Query Frame = 1 Query: 1120 VIDLHSAVRDLVVVGS---FLAVATSNPAIEVIDLNRMKPHGTLEGH---IMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVWGRVG-GGSDVGEWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIW 1668 +I + + D+ +G F+AVATS + V +L M L GH ++ + + + +TL+V+GS D +R+W+ +TG+C V +GH G +GAV AFS HR +SGS D +++VW G DV +AV+ H + + + +G D T +W Sbjct: 351 LIGFNEEIVDMKFLGESEKFIAVATSVEQVRVYELASMSCSYVLSGHKDIVLCLDTCVTSSGETLIVTGSKDNTVRLWEANTGNCIGVGAGHMGAVGAV----------AFSKKHRN---------FFISGSSDRTLKVWNLDGTSDDDVNNLKAKAVVAAHDKDINSVAVAPNDSLACSGSQDRTACVW 521
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A484MYH9_9ASTE (Utp13 domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484MYH9_9ASTE) HSP 1 Score: 75.1 bits (183), Expect = 2.860e-10 Identity = 56/192 (29.17%), Postives = 85/192 (44.27%), Query Frame = 1 Query: 1120 VIDLHSAVRDLVVVGS---FLAVATSNPAIEVIDLNRMKPHGTLEGH---IMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVW---GRVGGGSDVGEWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIW 1668 ++ + + D+ +G FLAVATS + V DL M L GH ++ + S + TL+V+GS D +R+WDP T HC + GH G +GA+ AFS H VSGS D +++VW G + +V +AV+ H + + + +G D T IW Sbjct: 349 LVGYNEEIADMKFLGEDEQFLAVATSVEQVRVYDLTSMSCTYVLTGHTEIVLCLDTCTSSSGRTLVVTGSKDNSVRLWDPLTTHCIGIGVGHMGAVGAI----------AFSKKHMN---------FFVSGSSDRTLKVWSLDGLLDNNEEVFNLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACIW 521
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: UPI000900F5E6 (transducin beta-like protein 3 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000900F5E6) HSP 1 Score: 73.6 bits (179), Expect = 8.660e-10 Identity = 56/192 (29.17%), Postives = 83/192 (43.23%), Query Frame = 1 Query: 1120 VIDLHSAVRDLVVVGS---FLAVATSNPAIEVIDLNRMKPHGTLEGH---IMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVW---GRVGGGSDVGEWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIW 1668 ++ + + D+ +G FLAVATS + V DL M L GH ++ + S +E L+V+GS D +R+WD T HC V GH G +GAV AFS H VSGS D +++VW G + +V +A + H + + + +G D T IW Sbjct: 349 LVGYNEEIADMKFLGEDEQFLAVATSVEQVRVYDLTTMSCAYVLAGHTEIVLCLDTCVSTSERPLIVTGSKDNSVRLWDSQTKHCIGVGVGHMGAVGAV----------AFSKKHHN---------FFVSGSSDRTLKVWSLDGLLNDTEEVFNLKAKATVAAHDKDINSLAVAPNDSLVCSGSQDRTACIW 521
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A1X6NN76_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NN76_PORUM) HSP 1 Score: 70.9 bits (172), Expect = 2.240e-9 Identity = 58/193 (30.05%), Postives = 78/193 (40.41%), Query Frame = 1 Query: 1126 DLHSAVRDLVVVGSFLAVATSNPAIEVIDLNRMKPHGTLEGHIMAVSALASLN------------EDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVWGRVGGGSDVGEWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIW 1668 +L S+ ++LVV GS + + V D +R + L GH +VS + + + +VSGS D LRVWD D G C AVL GH + VC + G +VSGS D +RVW D G C AVLEGH H V + + G A +W Sbjct: 188 ELRSSEKNLVVSGS------DDGTLRVWDADRGECVAVLNGHSCSVSCVCVVEVGGGGDGVDCGCKVQRVVSGSDDHTLRVWDADRGECVAVLKGHSDKVMCVCVVE--------VGXXXXXXXXXXKVQRVVSGSADHMLRVW-------DAGRGECVAVLEGHSHWVRCVCVVEVGGXXXXXXXAARRSVW 359
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A0K9NPY2_ZOSMR (Transducin/WD40 repeat-like superfamily protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NPY2_ZOSMR) HSP 1 Score: 71.6 bits (174), Expect = 3.290e-9 Identity = 55/174 (31.61%), Postives = 81/174 (46.55%), Query Frame = 1 Query: 1165 SFLAVATSNPAIEVIDLNRMKPHGTLEGH---IMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVW---GRVGGGSDVGEWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIW 1668 +FLAVAT+ I V DL+ M L GH ++ + AS++ TL+V+GS D +R+WD +T +C + +GH G +GAV AFS R VSGS D ++++W G G V RAV+ H + + + +G D T IW Sbjct: 360 NFLAVATNLEQIRVYDLSSMSCSYVLVGHTDIVLCLDTCASIHGATLVVTGSKDNNVRLWDTETRNCIGIGTGHTGAVGAV----------AFSKKTRN---------FFVSGSSDRTLKIWTLDGLPEDGQQV-NLKTRAVVAAHDKDINSLAVSPNDSLLCSGSQDRTACIW 513
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A068UYA8_COFCA (Utp13 domain-containing protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068UYA8_COFCA) HSP 1 Score: 70.1 bits (170), Expect = 8.440e-9 Identity = 59/192 (30.73%), Postives = 83/192 (43.23%), Query Frame = 1 Query: 1120 VIDLHSAVRDLVVVGS---FLAVATSNPAIEVIDLNRMKPHGTLEGHIMAVSALASL---NEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVWGRVG---GGSDVGEWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIW 1668 +I + + D+ +G FLAV+TS + V DL M L GH V L + TL+V+GS D +RVWD ++ C V GH G +GA+ AFS HR VSGS D +++VW G G DV +AV+ H + + + +G D T IW Sbjct: 151 LIGYNEEIADMKFLGEEEQFLAVSTSVEHVRVYDLASMSCAYVLAGHTDIVLCLDTCVLGTGRTLVVTGSKDNSVRVWDAESKCCIGVGIGHMGAVGAI----------AFSRKHRN---------FFVSGSSDRTLKVWSLDGLPDGAEDVPNLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACIW 323
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A1V6S4X4_9EURO (Uncharacterized protein n=1 Tax=Penicillium vulpinum TaxID=29845 RepID=A0A1V6S4X4_9EURO) HSP 1 Score: 68.9 bits (167), Expect = 9.970e-9 Identity = 63/181 (34.81%), Postives = 83/181 (45.86%), Query Frame = 1 Query: 1171 LAVATSNPAIEVIDLNRMKPHGTLEGHIMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVWGRVGGG------SDVGE---WACRAVLEGHRHGVWA--AHGLSLSGVFATGGGDATVKIWAPST 1680 + V + N I V D N TLEGH + AL LVSGS D LRVWD C V +GH T+ ++ + HP + LI+SGS DS++RVW G ++ GE + R VL GH+H V A AHG +L +G D TV++W ST Sbjct: 29 IVVGSDNSKINVYDTNTGALRATLEGHEGGIWALEY--HGNTLVSGSTDRSLRVWDIARAECTHVFNGHTSTLRSLQIL---HPVQIDQNPDGT-PVMVPEQPLIISGSRDSTLRVWKLPQPGDPQYFPAENGEECPYLIR-VLTGHQHSVRALVAHGDTL----VSGSYDNTVRVWKIST 198
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A7S4B599_CHRCT (Hypothetical protein (Fragment) n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B599_CHRCT) HSP 1 Score: 70.1 bits (170), Expect = 1.060e-8 Identity = 60/213 (28.17%), Postives = 86/213 (40.38%), Query Frame = 1 Query: 1171 LAVATSNPAIEVIDLNRMKPHGTLEGHIMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVC----------------TIFWRHPATAFSGAHRRGEAKTS---------------------GESLIVSGSGDSSVRVWGRVGGGSDVGEWACRAVLE------GHRHGVWAAHGLSLSGVFATGGGDATVKIWAPST 1680 LAVAT++ I + +++ M L GH V AL + + S S D RVWD T C A +GH +GAV W A A + E + S + L+++GS D +++VWG G G VL+ GHR GVWAA + V A+ GD T+K+W+ S+ Sbjct: 379 LAVATNSEQIRLFEVHSMSCR-LLSGHTDIVLALDVSADGHWIGSASKDLCARVWDAVTAKCVAKCAGHVEAVGAVAFGRRGAFLLXXXXXXXXXLWDLKPLAACRASGKYEKELSPRALSTVLAHSKDINTLAVAPNDRLVITGSQDRTLKVWGAADGAVATGMLPLPGVLKEVATLSGHRRGVWAAAFSPVDKVAASASGDMTIKVWSMSS 590 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig920.18225.1 >prot_L-elsbetiae_contig920.18225.1 ID=prot_L-elsbetiae_contig920.18225.1|Name=mRNA_L-elsbetiae_contig920.18225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=584bp MCGSRDSPMRDSRRGSAPSSRSASPNKRPWYPAGCRPSSGESGRNGSDDHback to top mRNA from alignment at L-elsbetiae_contig920:17107..20206- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig920.18225.1 ID=mRNA_L-elsbetiae_contig920.18225.1|Name=mRNA_L-elsbetiae_contig920.18225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3100bp|location=Sequence derived from alignment at L-elsbetiae_contig920:17107..20206- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig920:17107..20206- >mRNA_L-elsbetiae_contig920.18225.1 ID=mRNA_L-elsbetiae_contig920.18225.1|Name=mRNA_L-elsbetiae_contig920.18225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3504bp|location=Sequence derived from alignment at L-elsbetiae_contig920:17107..20206- (Laminarionema elsbetiae ELsaHSoW15)back to top |