mRNA_L-elsbetiae_contig920.18225.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig920.18225.1
Unique NamemRNA_L-elsbetiae_contig920.18225.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: D8LC03_ECTSI (HET-R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC03_ECTSI)

HSP 1 Score: 476 bits (1226), Expect = 1.120e-156
Identity = 338/686 (49.27%), Postives = 408/686 (59.48%), Query Frame = 1
Query:    1 SLSPYPYKRRGFLRRKSAPPTARAFDVGVDSIIRRGSTGTRPLPRTPTFTNEMCGSRDSPMRDSRRGSAPSS-RSASPNKRPWYPAGCRPSSGESGRNGSDDHESTYVVHPTFRHLFDKTANGSDAGG---ARGQNDRGVCGG--GGGVDGRLLRQHRIAVPDAGVGG-SPHPSPQTA-TTAPPRSETDRKARSATGERRRKTANAHLSTKQKNIADNKRQDKPTG------------------------------------SRLTPNDRLPRRKVRNEGRFIEKREGHQHDVYREPVAMVRDRVRDLQSRGKPRSQQNGLSVDD----RGRVGPVFPSSAVFTGHSEQVLALAQHKDVMFSAAADGTAKAWDTYSQQCLATYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAQPLHVIDLHSAVRDLVVVGSFLAVATSNPAIEVIDLNRMKPHGTLEGHIMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVWGRVGGGSDVG--EWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIWAPSTRIGEVNGMDVTD----GGGETASEQHQQHQRWECVGGVRGAAGAVGTVLMHEEALAFGTSESLIARFPLQLCMPKR 1896
            S SP PYKRRG LRR    P  R FD+  +S     STG RP   T   +  +     SP  +S   SAP + RS SP+KRPWYPA  RPSS ++G +G+DD  S YVVHP+FRHLF + A+ S A     +R    +G   G  GGGV G      R       VGG  P  S  T  TT   RSE   +   AT  R R     H S  + +  + +R+D  TG                                    +RL  ND    R++  +  ++ +    Q     + VA +R RVRD+Q+R +PR Q+ G  +      RG   P   SSAVF GHSEQVLALA+ +D++FSA+ADGTAKAWDT SQQCLATY               XXXXXXXXXXXXXXXX TAQ L V+DL SAVRD+V+VG FLAVATSNP IE+++L RM+ HGTLEGH++AVSALASL  + LLVSGSHDTF+RVWDPDT   +AVL GHGGT+GA+CT+ W  P      A R  E     E+LIVSGSGD + RVWG+ G G D G  EW CRAVLEGHRHGVWA +G SLSG FATGGGDATVK+WAP+T     +G +  +    G GE+  +       WE VGGVRG AGAVG VL+ E+AL FGTSE+LIARFPLQLCMP R
Sbjct:   36 STSPNPYKRRGLLRRIDPQPQ-RKFDIDRNS----SSTGVRPPSLTSPTSTSVAPGGGSPSWNSL--SAPGTPRSNSPSKRPWYPASRRPSSRDNGESGADD--SAYVVHPSFRHLFTERAHSSSANDPSRSRQVYSQGPHHGASGGGVSGGENSGRRPGTAVFSVGGWDPSYSSSTKETTVARRSERPGEVEPATAGRWR---GVHFSKAKHSPPEQQRRDTTTGIGSAPDASSRQRGGERASFSPTDRWSGFGSKSDASPARLRSNDHRSPREMGGQRPYVGRETVEQEGAPLKTVAAMRGRVRDMQARRRPRRQERGGRMPPADSRRGEGDPKLRSSAVFIGHSEQVLALARCEDILFSASADGTAKAWDTCSQQCLATYKGHHGAVWGMQVTGRXXXXXXXXXXXXXXXXETAQSLSVLDLRSAVRDVVMVGDFLAVATSNPGIEIVELKRMRRHGTLEGHLLAVSALASLEGENLLVSGSHDTFIRVWDPDTLTSKAVLGGHGGTVGAICTVSW--PQGGHDHAKRAAE-----EALIVSGSGDGTARVWGQQGVG-DKGQREWTCRAVLEGHRHGVWAVYGSSLSGAFATGGGDATVKLWAPTTTNNAEHGNEEAERGNLGSGESRHQXXXXXXXWELVGGVRGTAGAVGAVLIDEQALVFGTSEALIARFPLQLCMPAR 701          
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A6H5JEV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV4_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.280e-34
Identity = 135/370 (36.49%), Postives = 179/370 (48.38%), Query Frame = 1
Query:    1 SLSPYPYKRRGFLRRKSAPPTARAFDVGVDSIIRRGSTGTRPLPRTPTFTNEMCGSRDSPMRDSRRGSAPSS-RSASPNKRPWYPAGCRPSSGESGRNGSDDHESTYVVHPTFRHLFDKTANGSDAGGARGQND-------RGVCGGGGGVDGRLLRQHRIAVPDAGVGGSPHPSPQTATTAPPRSETDRKARSATGERRRKTANAHLSTKQKNIADNKRQD------------------------KPTGSRL---TPNDRLPRRKVRNEGR----------FIEKREGHQHDVYREPVAMVRDRVRDLQSRGKPRSQQNGLSV---DDRGRVGPVFPSSAVFTGHSEQVLALAQHKDVMFSAAADGTAK 966
            S+S  PYKRRG LRR+   P  R FD+  +S     S G RP   T   +  +    +SP  +S   S P + RS SPNKRPWYPAG RPSS +SG +G+DD  S YVVHP+FRHLF ++A+ S A                G   GGG       R+   AV   G G   + S  T TT   +SE   +   A   R R    AH S  + N  + + ++                         PTG      + +D  P R  RN+ R          + E+    Q     EPVA +R RVRD+Q+RG+PR ++ G  +   D R   G     S+VF GHS+QVLALA+ +D++FSA+ADGTAK
Sbjct:   36 SMSSNPYKRRGLLRRRDPQPQ-RKFDIDRNS----SSAGVRPPLLTSPVSTSVAPGGESPSWNSL--SVPGTPRSNSPNKRPWYPAGRRPSSRDSGESGADD--SAYVVHPSFRHLFTESAHSSGANDPSRSRQVYSQGPHHGSSRGGGSXXENSGRRPGTAVFSVGGGDPSYSSSTTETTVARQSERSGEVEPAAAGRWR---GAHFSKAEHNPREQQHRNTTTTGIGSAPDASSRQRGGERASFSPTGRSSVFGSESDASPPRPRRNDHRSPREMGGQRPYAERETVEQGGAPLEPVAAMRSRVRDMQARGRPRRKERGGRMPPADSRRGEGDPRLRSSVFIGHSKQVLALARREDILFSASADGTAK 393          
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: UPI001FB17D18 (transducin beta-like protein 3 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB17D18)

HSP 1 Score: 76.6 bits (187), Expect = 8.950e-11
Identity = 54/190 (28.42%), Postives = 88/190 (46.32%), Query Frame = 1
Query: 1120 VIDLHSAVRDLVVVGS---FLAVATSNPAIEVIDLNRMKPHGTLEGH---IMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVWGRVG-GGSDVGEWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIW 1668
            +I  +  + D+  +G    F+AVATS   + V +L  M     L GH   ++ +    + + +TL+V+GS D  +R+W+ +TG+C  V +GH G +GAV          AFS  HR            +SGS D +++VW   G    DV     +AV+  H   + +        +  +G  D T  +W
Sbjct:  351 LIGFNEEIVDMKFLGESEKFIAVATSVEQVRVYELASMSCSYVLSGHKDIVLCLDTCVTSSGETLIVTGSKDNTVRLWEANTGNCIGVGAGHMGAVGAV----------AFSKKHRN---------FFISGSSDRTLKVWNLDGTSDDDVNNLKAKAVVAAHDKDINSVAVAPNDSLACSGSQDRTACVW 521          
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A484MYH9_9ASTE (Utp13 domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484MYH9_9ASTE)

HSP 1 Score: 75.1 bits (183), Expect = 2.860e-10
Identity = 56/192 (29.17%), Postives = 85/192 (44.27%), Query Frame = 1
Query: 1120 VIDLHSAVRDLVVVGS---FLAVATSNPAIEVIDLNRMKPHGTLEGH---IMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVW---GRVGGGSDVGEWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIW 1668
            ++  +  + D+  +G    FLAVATS   + V DL  M     L GH   ++ +    S +  TL+V+GS D  +R+WDP T HC  +  GH G +GA+          AFS  H             VSGS D +++VW   G +    +V     +AV+  H   + +        +  +G  D T  IW
Sbjct:  349 LVGYNEEIADMKFLGEDEQFLAVATSVEQVRVYDLTSMSCTYVLTGHTEIVLCLDTCTSSSGRTLVVTGSKDNSVRLWDPLTTHCIGIGVGHMGAVGAI----------AFSKKHMN---------FFVSGSSDRTLKVWSLDGLLDNNEEVFNLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACIW 521          
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: UPI000900F5E6 (transducin beta-like protein 3 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000900F5E6)

HSP 1 Score: 73.6 bits (179), Expect = 8.660e-10
Identity = 56/192 (29.17%), Postives = 83/192 (43.23%), Query Frame = 1
Query: 1120 VIDLHSAVRDLVVVGS---FLAVATSNPAIEVIDLNRMKPHGTLEGH---IMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVW---GRVGGGSDVGEWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIW 1668
            ++  +  + D+  +G    FLAVATS   + V DL  M     L GH   ++ +    S +E  L+V+GS D  +R+WD  T HC  V  GH G +GAV          AFS  H             VSGS D +++VW   G +    +V     +A +  H   + +        +  +G  D T  IW
Sbjct:  349 LVGYNEEIADMKFLGEDEQFLAVATSVEQVRVYDLTTMSCAYVLAGHTEIVLCLDTCVSTSERPLIVTGSKDNSVRLWDSQTKHCIGVGVGHMGAVGAV----------AFSKKHHN---------FFVSGSSDRTLKVWSLDGLLNDTEEVFNLKAKATVAAHDKDINSLAVAPNDSLVCSGSQDRTACIW 521          
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A1X6NN76_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NN76_PORUM)

HSP 1 Score: 70.9 bits (172), Expect = 2.240e-9
Identity = 58/193 (30.05%), Postives = 78/193 (40.41%), Query Frame = 1
Query: 1126 DLHSAVRDLVVVGSFLAVATSNPAIEVIDLNRMKPHGTLEGHIMAVSALASLN------------EDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVWGRVGGGSDVGEWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIW 1668
            +L S+ ++LVV GS       +  + V D +R +    L GH  +VS +  +             +   +VSGS D  LRVWD D G C AVL GH   +  VC +          G              +VSGS D  +RVW       D G   C AVLEGH H V     + + G        A   +W
Sbjct:  188 ELRSSEKNLVVSGS------DDGTLRVWDADRGECVAVLNGHSCSVSCVCVVEVGGGGDGVDCGCKVQRVVSGSDDHTLRVWDADRGECVAVLKGHSDKVMCVCVVE--------VGXXXXXXXXXXKVQRVVSGSADHMLRVW-------DAGRGECVAVLEGHSHWVRCVCVVEVGGXXXXXXXAARRSVW 359          
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A0K9NPY2_ZOSMR (Transducin/WD40 repeat-like superfamily protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NPY2_ZOSMR)

HSP 1 Score: 71.6 bits (174), Expect = 3.290e-9
Identity = 55/174 (31.61%), Postives = 81/174 (46.55%), Query Frame = 1
Query: 1165 SFLAVATSNPAIEVIDLNRMKPHGTLEGH---IMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVW---GRVGGGSDVGEWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIW 1668
            +FLAVAT+   I V DL+ M     L GH   ++ +   AS++  TL+V+GS D  +R+WD +T +C  + +GH G +GAV          AFS   R            VSGS D ++++W   G    G  V     RAV+  H   + +        +  +G  D T  IW
Sbjct:  360 NFLAVATNLEQIRVYDLSSMSCSYVLVGHTDIVLCLDTCASIHGATLVVTGSKDNNVRLWDTETRNCIGIGTGHTGAVGAV----------AFSKKTRN---------FFVSGSSDRTLKIWTLDGLPEDGQQV-NLKTRAVVAAHDKDINSLAVSPNDSLLCSGSQDRTACIW 513          
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A068UYA8_COFCA (Utp13 domain-containing protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068UYA8_COFCA)

HSP 1 Score: 70.1 bits (170), Expect = 8.440e-9
Identity = 59/192 (30.73%), Postives = 83/192 (43.23%), Query Frame = 1
Query: 1120 VIDLHSAVRDLVVVGS---FLAVATSNPAIEVIDLNRMKPHGTLEGHIMAVSALASL---NEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVWGRVG---GGSDVGEWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDATVKIW 1668
            +I  +  + D+  +G    FLAV+TS   + V DL  M     L GH   V  L +       TL+V+GS D  +RVWD ++  C  V  GH G +GA+          AFS  HR            VSGS D +++VW   G   G  DV     +AV+  H   + +        +  +G  D T  IW
Sbjct:  151 LIGYNEEIADMKFLGEEEQFLAVSTSVEHVRVYDLASMSCAYVLAGHTDIVLCLDTCVLGTGRTLVVTGSKDNSVRVWDAESKCCIGVGIGHMGAVGAI----------AFSRKHRN---------FFVSGSSDRTLKVWSLDGLPDGAEDVPNLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACIW 323          
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A1V6S4X4_9EURO (Uncharacterized protein n=1 Tax=Penicillium vulpinum TaxID=29845 RepID=A0A1V6S4X4_9EURO)

HSP 1 Score: 68.9 bits (167), Expect = 9.970e-9
Identity = 63/181 (34.81%), Postives = 83/181 (45.86%), Query Frame = 1
Query: 1171 LAVATSNPAIEVIDLNRMKPHGTLEGHIMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDSSVRVWGRVGGG------SDVGE---WACRAVLEGHRHGVWA--AHGLSLSGVFATGGGDATVKIWAPST 1680
            + V + N  I V D N      TLEGH   + AL        LVSGS D  LRVWD     C  V +GH  T+ ++  +   HP                 + LI+SGS DS++RVW     G      ++ GE   +  R VL GH+H V A  AHG +L     +G  D TV++W  ST
Sbjct:   29 IVVGSDNSKINVYDTNTGALRATLEGHEGGIWALEY--HGNTLVSGSTDRSLRVWDIARAECTHVFNGHTSTLRSLQIL---HPVQIDQNPDGT-PVMVPEQPLIISGSRDSTLRVWKLPQPGDPQYFPAENGEECPYLIR-VLTGHQHSVRALVAHGDTL----VSGSYDNTVRVWKIST 198          
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Match: A0A7S4B599_CHRCT (Hypothetical protein (Fragment) n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B599_CHRCT)

HSP 1 Score: 70.1 bits (170), Expect = 1.060e-8
Identity = 60/213 (28.17%), Postives = 86/213 (40.38%), Query Frame = 1
Query: 1171 LAVATSNPAIEVIDLNRMKPHGTLEGHIMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHCEAVLSGHGGTIGAVC----------------TIFWRHPATAFSGAHRRGEAKTS---------------------GESLIVSGSGDSSVRVWGRVGGGSDVGEWACRAVLE------GHRHGVWAAHGLSLSGVFATGGGDATVKIWAPST 1680
            LAVAT++  I + +++ M     L GH   V AL    +   + S S D   RVWD  T  C A  +GH   +GAV                    W     A   A  + E + S                      + L+++GS D +++VWG   G    G      VL+      GHR GVWAA    +  V A+  GD T+K+W+ S+
Sbjct:  379 LAVATNSEQIRLFEVHSMSCR-LLSGHTDIVLALDVSADGHWIGSASKDLCARVWDAVTAKCVAKCAGHVEAVGAVAFGRRGAFLLXXXXXXXXXLWDLKPLAACRASGKYEKELSPRALSTVLAHSKDINTLAVAPNDRLVITGSQDRTLKVWGAADGAVATGMLPLPGVLKEVATLSGHRRGVWAAAFSPVDKVAASASGDMTIKVWSMSS 590          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig920.18225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC03_ECTSI1.120e-15649.27HET-R n=1 Tax=Ectocarpus siliculosus TaxID=2880 Re... [more]
A0A6H5JEV4_9PHAE2.280e-3436.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001FB17D188.950e-1128.42transducin beta-like protein 3 n=1 Tax=Impatiens g... [more]
A0A484MYH9_9ASTE2.860e-1029.17Utp13 domain-containing protein n=3 Tax=Cuscuta se... [more]
UPI000900F5E68.660e-1029.17transducin beta-like protein 3 n=2 Tax=Ipomoea Tax... [more]
A0A1X6NN76_PORUM2.240e-930.05Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A0K9NPY2_ZOSMR3.290e-931.61Transducin/WD40 repeat-like superfamily protein n=... [more]
A0A068UYA8_COFCA8.440e-930.73Utp13 domain-containing protein n=1 Tax=Coffea can... [more]
A0A1V6S4X4_9EURO9.970e-934.81Uncharacterized protein n=1 Tax=Penicillium vulpin... [more]
A0A7S4B599_CHRCT1.060e-828.17Hypothetical protein (Fragment) n=2 Tax=Chrysotila... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig920contigL-elsbetiae_contig920:17107..20206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score454.1
Seed ortholog evalue9.6e-125
Seed eggNOG ortholog2880.D8LC03
KEGG koko:K03361,ko:K22071
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00407
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000746,GO:0000747,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006508,GO:0006511,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0019953,GO:0022414,GO:0030163,GO:0030674,GO:0031145,GO:0031461,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0044764,GO:0050789,GO:0050794,GO:0051603,GO:0051704,GO:0051726,GO:0060090,GO:0065007,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029,ko04121
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-20_003950.1
Exons6
Model size1940
Cds size1752
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig920.18225.1prot_L-elsbetiae_contig920.18225.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig920 17139..19993 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816993.760471-UTR-L-elsbetiae_contig920:17106..171381622816993.760471-UTR-L-elsbetiae_contig920:17106..17138Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig920 17107..17138 -
1691683968.1855366-UTR-L-elsbetiae_contig920:17106..171381691683968.1855366-UTR-L-elsbetiae_contig920:17106..17138Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig920 17107..17138 -
1622816993.8430407-UTR-L-elsbetiae_contig920:19993..200091622816993.8430407-UTR-L-elsbetiae_contig920:19993..20009Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig920 19994..20009 -
1691683968.2690725-UTR-L-elsbetiae_contig920:19993..200091691683968.2690725-UTR-L-elsbetiae_contig920:19993..20009Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig920 19994..20009 -
1622816993.8580775-UTR-L-elsbetiae_contig920:20066..202061622816993.8580775-UTR-L-elsbetiae_contig920:20066..20206Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig920 20067..20206 -
1691683968.2787704-UTR-L-elsbetiae_contig920:20066..202061691683968.2787704-UTR-L-elsbetiae_contig920:20066..20206Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig920 20067..20206 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816993.775539-CDS-L-elsbetiae_contig920:17138..174601622816993.775539-CDS-L-elsbetiae_contig920:17138..17460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 17139..17460 -
1691683968.1976655-CDS-L-elsbetiae_contig920:17138..174601691683968.1976655-CDS-L-elsbetiae_contig920:17138..17460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 17139..17460 -
1622816993.7885258-CDS-L-elsbetiae_contig920:17598..178561622816993.7885258-CDS-L-elsbetiae_contig920:17598..17856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 17599..17856 -
1691683968.2080472-CDS-L-elsbetiae_contig920:17598..178561691683968.2080472-CDS-L-elsbetiae_contig920:17598..17856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 17599..17856 -
1622816993.8046122-CDS-L-elsbetiae_contig920:18191..183881622816993.8046122-CDS-L-elsbetiae_contig920:18191..18388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 18192..18388 -
1691683968.2178605-CDS-L-elsbetiae_contig920:18191..183881691683968.2178605-CDS-L-elsbetiae_contig920:18191..18388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 18192..18388 -
1622816993.8189747-CDS-L-elsbetiae_contig920:18592..187571622816993.8189747-CDS-L-elsbetiae_contig920:18592..18757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 18593..18757 -
1691683968.2366438-CDS-L-elsbetiae_contig920:18592..187571691683968.2366438-CDS-L-elsbetiae_contig920:18592..18757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 18593..18757 -
1622816993.8291898-CDS-L-elsbetiae_contig920:19183..199931622816993.8291898-CDS-L-elsbetiae_contig920:19183..19993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 19184..19993 -
1691683968.2481284-CDS-L-elsbetiae_contig920:19183..199931691683968.2481284-CDS-L-elsbetiae_contig920:19183..19993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 19184..19993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig920.18225.1

>prot_L-elsbetiae_contig920.18225.1 ID=prot_L-elsbetiae_contig920.18225.1|Name=mRNA_L-elsbetiae_contig920.18225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=584bp
MCGSRDSPMRDSRRGSAPSSRSASPNKRPWYPAGCRPSSGESGRNGSDDH
ESTYVVHPTFRHLFDKTANGSDAGGARGQNDRGVCGGGGGVDGRLLRQHR
IAVPDAGVGGSPHPSPQTATTAPPRSETDRKARSATGERRRKTANAHLST
KQKNIADNKRQDKPTGSRLTPNDRLPRRKVRNEGRFIEKREGHQHDVYRE
PVAMVRDRVRDLQSRGKPRSQQNGLSVDDRGRVGPVFPSSAVFTGHSEQV
LALAQHKDVMFSAAADGTAKAWDTYSQQCLATYEGHRKAVWGMQATNRTL
ITGSADGTVRFWDIETAQPLHVIDLHSAVRDLVVVGSFLAVATSNPAIEV
IDLNRMKPHGTLEGHIMAVSALASLNEDTLLVSGSHDTFLRVWDPDTGHC
EAVLSGHGGTIGAVCTIFWRHPATAFSGAHRRGEAKTSGESLIVSGSGDS
SVRVWGRVGGGSDVGEWACRAVLEGHRHGVWAAHGLSLSGVFATGGGDAT
VKIWAPSTRIGEVNGMDVTDGGGETASEQHQQHQRWECVGGVRGAAGAVG
TVLMHEEALAFGTSESLIARFPLQLCMPKRRPK*
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mRNA from alignment at L-elsbetiae_contig920:17107..20206-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig920.18225.1 ID=mRNA_L-elsbetiae_contig920.18225.1|Name=mRNA_L-elsbetiae_contig920.18225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3100bp|location=Sequence derived from alignment at L-elsbetiae_contig920:17107..20206- (Laminarionema elsbetiae ELsaHSoW15)
TCGTTGTCCCCTTACCCGTACAAGCGAAGGGGGTTTCTTCGACGAAAGAG CGCGCCGCCGACAGCGCGGGCATTCGATGTTGGCGTTGACTCTATTATTA GAAGAGGCTCTACCGGAACACGACCACTGCCGCGGACCCCGTCTGACAAC TTACTTCACGATTCTGTCGGTATCAACGGATACGCAACACCTGGTAGTAC TTTCACTAACGAGATGTGTGGTTCTAGAGACTCGCCAATGCGGGACTCCC GCCGTGGCAGCGCACCCTCTTCCCGGAGTGCTTCGCCAAACAAGCGGCCG TGGTATCCCGCCGGCTGCCGCCCTTCCTCTGGTGAGAGCGGCAGAAACGG TAGTGACGATCACGAGAGCACGTACGTCGTGCACCCCACCTTTCGACACC TTTTCGACAAGACGGCAAACGGCAGCGACGCAGGTGGGGCGCGTGGACAG AATGATCGAGGAGTTTGCGGCGGCGGCGGCGGCGTCGACGGTAGGTTACT GCGCCAACACCGAATAGCAGTGCCTGATGCGGGTGTGGGTGGTTCGCCTC ACCCATCGCCACAAACGGCAACGACGGCACCGCCACGCTCAGAGACGGAC AGAAAAGCTCGATCAGCGACAGGGGAAAGAAGGAGAAAAACGGCGAACGC CCACCTTTCAACGAAGCAAAAAAATATCGCCGACAATAAAAGGCAGGATA AACCGACTGGGAGCAGACTAACACCCAACGATCGGTTGCCCCGAAGAAAG GTCAGAAACGAAGGAAGGTTCATTGAAAAAAGAGAAGGGCATCAGCACGA CGTTTATCGAGAGCCAGTGGCCATGGTCAGGGATCGCGTTAGGGATCTGC AGTCGAGGGGAAAGCCACGAAGCCAACAGAACGGTTTGTCGGTAGACGAT CGCGGGAGGGTCGGCCCAGTGTTCCCTTCTTCTGCCGTGTTCACTGGGCA TAGCGAGCAGGTGCTGGCTCTAGCCCAACACAAGGATGTTATGTTTTCGG CGGCGGCTGACGGCACCGCAAAGGTAAGCGTGCTCTTCTCCCGGACGGAT GTGTTTGGTAGCGGAGGTCTTCGTCTGAGGCCGGAGTGAAAAATAGTTTG ACTCCATTCCTTTTTATTCGACACAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGCGCAGGTCAGCTCCCACCCGAGGG TCACTAACTGTGCCCCACACATACATACCCACATGGCACACAAAGATCAC CCACGTAACCCCACCGATAAGCATCTAGTACCTAGAACCACAGCATTCCC TACGAGCACGTTTGGCTTGTGTTCGGTCGGTCACCATCGGAGATGACCGA GAGGGATGCGGTGATCTCCTGTAACCTCTGCCCCTTCTGCTGTGTTCGTT GCACTGTACCACCGCACGTGCGCACTCTCTCAACGGTTATGATTATTAGG CCTGGGATACTTACTCGCAGCAGTGCCTTGCGACATATGAGGGGCACCGG AAGGCCGTGTGGGGAATGCAAGCCACTAACCGTACTCTGATCACGGGCAG CGCTGATGGCACGGTTCGGTTCTGGGATATCGAGACCGCTCAACCCCTTC ACGTGATAGACTTGGTGAGGCTACCAGATCGACCCGATTCGTCGTATTGC AGTCGCGAAGTTGAACGCACCTGTTAGGGCCTGATTGAATACCGTTGGAT CGCTCATCGCGGCCTGCTTTATATTCCAGGCGGCGTGCGAATCGCCCCTG CTGCTACGGATGATGCTAATATAAGCGGGCACCTGACTTGGTTCGTAATT TACCTGTACATCGTTCAGCACTCGGCAGTACGAGACTTGGTGGTGGTTGG AAGTTTCCTCGCGGTAGCGACGTCCAACCCTGCCATCGAAGTGATCGACT TAAACCGCATGAAGCCGCACGGCACCCTGGAGGGGCATATTATGGCAGTA TCTGCCTTAGCTTCGCTGAACGAAGACACCCTCTTGGTTTCGGGCTCACA CGATACATTTTTGAGGTAAGTGTTGTACCTACAAGTGATCGCGTTATTGC GGCTTGTGCAAAAAGTTTACCGGTAGAAGCGTGCATCATAGTGTACACCA TTCCAAGTTTTACGTAAGTGAAGAGGAGCGTGTGGCGAGAAAGTGTGGTC CGTTCATCAAGTTGGTGTTACATTCGATCCCCGCATGAAAGCTGTATCTT GTGTAAGAAACCTCGCATTCCGAACCCTAGAGTGCGATCAAGAGCCAGCG ATGTATTCTAGTGTTTCGTTCGTAGATCTCTCCAGCTGCCAACGCCAGAT GATCCTACCCAACTTGAACTAACCAGCTCCTGATCAATATTTCGAATTAG GGTGTGGGACCCCGACACGGGACACTGCGAAGCCGTTCTAAGCGGCCATG GGGGCACCATCGGCGCTGTCTGCACGATTTTTTGGCGTCATCCGGCGACG GCTTTCAGTGGAGCCCATCGCAGAGGAGAAGCCAAAACGAGTGGAGAGTC GCTGATTGTCAGCGGGTCGGGCGATTCTTCAGTTAGGGTGTGGGGCCGAG TTGGCGGCGGGAGCGATGTGGGAGAATGGGCGTGTCGGGCGGTGTTGGAA GGGCACAGGTGCGTGTGTGCCTATGCTTGCCCCTGTTCTGTTTCGCGAGT GAAGTGGGGCCAACGGCCGTCAGATGCGAGTTGGTGCTGTATACCAGGCG TAACGTTCGACTGAACTTCTCCAACCTAACCCGCGCCATCCATCAGGCAT GGGGTATGGGCTGCACACGGCTTGTCTCTCTCCGGCGTCTTCGCGACCGG TGGGGGGGATGCCACCGTCAAAATTTGGGCACCAAGCACAAGAATCGGCG AGGTGAACGGTATGGACGTCACGGACGGGGGCGGTGAAACGGCGAGCGAA CAGCACCAGCAGCACCAGAGATGGGAATGCGTCGGCGGCGTGAGGGGCGC TGCTGGAGCCGTAGGGACGGTTCTCATGCACGAGGAGGCGTTGGCTTTCG GCACTTCAGAGTCGCTTATCGCCAGATTTCCGCTACAGTTGTGTATGCCG AAACGTCGACCCAAGTGAAAAAATGCGTCCTGCATTTGTCCCTTGTTGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig920:17107..20206-

>mRNA_L-elsbetiae_contig920.18225.1 ID=mRNA_L-elsbetiae_contig920.18225.1|Name=mRNA_L-elsbetiae_contig920.18225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3504bp|location=Sequence derived from alignment at L-elsbetiae_contig920:17107..20206- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGGTTCTAGAGACTCGCCAATGCGGGACTCCCGCCGTGGCAGCGC
ACCCTCTTCCCGGAGTGCTTCGCCAAACAAGCGGCCGTGGTATCCCGCCG
GCTGCCGCCCTTCCTCTGGTGAGAGCGGCAGAAACGGTAGTGACGATCAC
GAGAGCACGTACGTCGTGCACCCCACCTTTCGACACCTTTTCGACAAGAC
GGCAAACGGCAGCGACGCAGGTGGGGCGCGTGGACAGAATGATCGAGGAG
TTTGCGGCGGCGGCGGCGGCGTCGACGGTAGGTTACTGCGCCAACACCGA
ATAGCAGTGCCTGATGCGGGTGTGGGTGGTTCGCCTCACCCATCGCCACA
AACGGCAACGACGGCACCGCCACGCTCAGAGACGGACAGAAAAGCTCGAT
CAGCGACAGGGGAAAGAAGGAGAAAAACGGCGAACGCCCACCTTTCAACG
AAGCAAAAAAATATCGCCGACAATAAAAGGCAGGATAAACCGACTGGGAG
CAGACTAACACCCAACGATCGGTTGCCCCGAAGAAAGGTCAGAAACGAAG
GAAGGTTCATTGAAAAAAGAGAAGGGCATCAGCACGACGTTTATCGAGAG
CCAGTGGCCATGGTCAGGGATCGCGTTAGGGATCTGCAGTCGAGGGGAAA
GCCACGAAGCCAACAGAACGGTTTGTCGGTAGACGATCGCGGGAGGGTCG
GCCCAGTGTTCCCTTCTTCTGCCGTGTTCACTGGGCATAGCGAGCAGGTG
CTGGCTCTAGCCCAACACAAGGATGTTATGTTTTCGGCGGCGGCTGACGG
CACCGCAAAGATGTGTGGTTCTAGAGACTCGCCAATGCGGGACTCCCGCC
GTGGCAGCGCACCCTCTTCCCGGAGTGCTTCGCCAAACAAGCGGCCGTGG
TATCCCGCCGGCTGCCGCCCTTCCTCTGGTGAGAGCGGCAGAAACGGTAG
TGACGATCACGAGAGCACGTACGTCGTGCACCCCACCTTTCGACACCTTT
TCGACAAGACGGCAAACGGCAGCGACGCAGGTGGGGCGCGTGGACAGAAT
GATCGAGGAGTTTGCGGCGGCGGCGGCGGCGTCGACGGTAGGTTACTGCG
CCAACACCGAATAGCAGTGCCTGATGCGGGTGTGGGTGGTTCGCCTCACC
CATCGCCACAAACGGCAACGACGGCACCGCCACGCTCAGAGACGGACAGA
AAAGCTCGATCAGCGACAGGGGAAAGAAGGAGAAAAACGGCGAACGCCCA
CCTTTCAACGAAGCAAAAAAATATCGCCGACAATAAAAGGCAGGATAAAC
CGACTGGGAGCAGACTAACACCCAACGATCGGTTGCCCCGAAGAAAGGTC
AGAAACGAAGGAAGGTTCATTGAAAAAAGAGAAGGGCATCAGCACGACGT
TTATCGAGAGCCAGTGGCCATGGTCAGGGATCGCGTTAGGGATCTGCAGT
CGAGGGGAAAGCCACGAAGCCAACAGAACGGTTTGTCGGTAGACGATCGC
GGGAGGGTCGGCCCAGTGTTCCCTTCTTCTGCCGTGTTCACTGGGCATAG
CGAGCAGGTGCTGGCTCTAGCCCAACACAAGGATGTTATGTTTTCGGCGG
CGGCTGACGGCACCGCAAAGGCCTGGGATACTTACTCGCAGCAGTGCCTT
GCGACATATGAGGGGCACCGGAAGGCCGTGTGGGGAATGCAAGCCACTAA
CCGTACTCTGATCACGGGCAGCGCTGATGGCACGGTTCGGTTCTGGGATA
TCGAGACCGCTCAACCCCTTCACGTGATAGACTTGGCCTGGGATACTTAC
TCGCAGCAGTGCCTTGCGACATATGAGGGGCACCGGAAGGCCGTGTGGGG
AATGCAAGCCACTAACCGTACTCTGATCACGGGCAGCGCTGATGGCACGG
TTCGGTTCTGGGATATCGAGACCGCTCAACCCCTTCACGTGATAGACTTG
CACTCGGCAGTACGAGACTTGGTGGTGGTTGGAAGTTTCCTCGCGGTAGC
GACGTCCAACCCTGCCATCGAAGTGATCGACTTAAACCGCATGAAGCCGC
ACGGCACCCTGGAGGGGCATATTATGGCAGTATCTGCCTTAGCTTCGCTG
AACGAAGACACCCTCTTGGTTTCGGGCTCACACGATACATTTTTGAGCAC
TCGGCAGTACGAGACTTGGTGGTGGTTGGAAGTTTCCTCGCGGTAGCGAC
GTCCAACCCTGCCATCGAAGTGATCGACTTAAACCGCATGAAGCCGCACG
GCACCCTGGAGGGGCATATTATGGCAGTATCTGCCTTAGCTTCGCTGAAC
GAAGACACCCTCTTGGTTTCGGGCTCACACGATACATTTTTGAGGGTGTG
GGACCCCGACACGGGACACTGCGAAGCCGTTCTAAGCGGCCATGGGGGCA
CCATCGGCGCTGTCTGCACGATTTTTTGGCGTCATCCGGCGACGGCTTTC
AGTGGAGCCCATCGCAGAGGAGAAGCCAAAACGAGTGGAGAGTCGCTGAT
TGTCAGCGGGTCGGGCGATTCTTCAGTTAGGGTGTGGGGCCGAGTTGGCG
GCGGGAGCGATGTGGGAGAATGGGCGTGTCGGGCGGTGTTGGAAGGGCAC
AGGGTGTGGGACCCCGACACGGGACACTGCGAAGCCGTTCTAAGCGGCCA
TGGGGGCACCATCGGCGCTGTCTGCACGATTTTTTGGCGTCATCCGGCGA
CGGCTTTCAGTGGAGCCCATCGCAGAGGAGAAGCCAAAACGAGTGGAGAG
TCGCTGATTGTCAGCGGGTCGGGCGATTCTTCAGTTAGGGTGTGGGGCCG
AGTTGGCGGCGGGAGCGATGTGGGAGAATGGGCGTGTCGGGCGGTGTTGG
AAGGGCACAGGCATGGGGTATGGGCTGCACACGGCTTGTCTCTCTCCGGC
GTCTTCGCGACCGGTGGGGGGGATGCCACCGTCAAAATTTGGGCACCAAG
CACAAGAATCGGCGAGGTGAACGGTATGGACGTCACGGACGGGGGCGGTG
AAACGGCGAGCGAACAGCACCAGCAGCACCAGAGATGGGAATGCGTCGGC
GGCGTGAGGGGCGCTGCTGGAGCCGTAGGGACGGTTCTCATGCACGAGGA
GGCGTTGGCTTTCGGCACTTCAGAGTCGCTTATCGCCAGATTTCCGCTAC
AGTTGTGTATGCCGAAACGTCGACCCAAGTGAGCATGGGGTATGGGCTGC
ACACGGCTTGTCTCTCTCCGGCGTCTTCGCGACCGGTGGGGGGGATGCCA
CCGTCAAAATTTGGGCACCAAGCACAAGAATCGGCGAGGTGAACGGTATG
GACGTCACGGACGGGGGCGGTGAAACGGCGAGCGAACAGCACCAGCAGCA
CCAGAGATGGGAATGCGTCGGCGGCGTGAGGGGCGCTGCTGGAGCCGTAG
GGACGGTTCTCATGCACGAGGAGGCGTTGGCTTTCGGCACTTCAGAGTCG
CTTATCGCCAGATTTCCGCTACAGTTGTGTATGCCGAAACGTCGACCCAA
GTGA
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