mRNA_L-elsbetiae_contig920.18224.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig920.18224.1
Unique NamemRNA_L-elsbetiae_contig920.18224.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig920.18224.1 vs. uniprot
Match: A0A6H5JKZ2_9PHAE (DLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKZ2_9PHAE)

HSP 1 Score: 394 bits (1011), Expect = 5.960e-132
Identity = 207/299 (69.23%), Postives = 231/299 (77.26%), Query Frame = 1
Query:    1 QVIRQAWAKDQTSLDSVGDTSSSSSSPSSWNIRRSVVDYNDGGTALQGLYARPEGEGLPDRLPGVILAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRAQSLAARRPITEDRSLMQGRVMAAVRTLGQMEEVDQEKLAAVGYCFGGMAVLDLARMARPDVEGDEDKAPLTVKAVASLHGILAPILPGAGCK-----VSDDXXXXXXXXXXXXXXXXPFVPPDQVQAMELEFLRRGANLEIVRYGGEALHAFTRPEKTHHTDKHAGLSYCKHADEDSWRRVVGLLREELS 882
            +VIR AWA   T+ D+     +SSSS +SW+IRRSVV+YNDG TALQGLY RPEGEGLPDRLPGVILAHTAVGPQEDMILWKLD IA LGYAAFALDMFGTG ALW+RA+SLAARRPITEDRSLMQ R  AAVRTL QME +D+E+LAAVGYCFGGM VLDLARM RPD +      P  +KAVASLHGILAPI PG G +      +DD                PFVPP+QV+AME E  RRGA LE+VRYGG A+HAFTRPEKT   D+ AGLSYCK+A+EDSWRRVV LLREE +
Sbjct:   71 KVIRAAWAVATTNPDTTNGRGASSSS-ASWSIRRSVVEYNDGDTALQGLYTRPEGEGLPDRLPGVILAHTAVGPQEDMILWKLDQIALLGYAAFALDMFGTGRALWNRAESLAARRPITEDRSLMQARATAAVRTLSQMEGIDEERLAAVGYCFGGMTVLDLARMVRPDGDDAGANTPPRLKAVASLHGILAPISPGTGGEDGAGLAADDAALAVPRVLVLHATADPFVPPEQVRAMEEELSRRGARLEVVRYGGSAMHAFTRPEKTSQVDRDAGLSYCKYAEEDSWRRVVELLREEFA 368          
BLAST of mRNA_L-elsbetiae_contig920.18224.1 vs. uniprot
Match: A0A836CLU0_9STRA (Dienelactone hydrolase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLU0_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.400e-50
Identity = 114/274 (41.61%), Postives = 145/274 (52.92%), Query Frame = 1
Query:   88 WNIRRSVVDYNDG-GTALQGLYARPEGEGLPDRLPGVILAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRAQSLAARRPITEDRSLMQGRVMAAVRTLGQMEEVDQEKLAAVGYCFGGMAVLDLARMARPDVEGDEDKAPLTVKAVASLHGILAPILP----------GAGCKVSDDXXXXXXXXXXXXXXXXPFVPPDQVQAMELEFLRRGAN-LEIVRYGGEALHAFTRPEKTHHTDKHAGLSYCKHADEDSWRRVVGLLRE 873
            ++++R +V Y D  G  LQG   RP  +   + LP V++AHTAVG Q+D++L  LD +A LGY AF LDMFG G A+WDR QSLAAR P+T DRSL+  R  AA+    Q+  VD  ++A VGYCFGG+  LD  R            A   + A  + HGILAP  P            GC+V                   PFVPPDQV+A E E    G     ++ Y G A HAFTRPEK   +D+ AGL Y   A E  W  + G L +
Sbjct:   37 FDLQRQIVPYIDHTGLPLQGFVVRPAAQAA-ESLPCVLVAHTAVGIQDDLLLQILDGVAGLGYVAFGLDMFGAGQAVWDREQSLAARAPLTSDRSLLARRAEAALHCATQLRGVDARRVAVVGYCFGGIVALDTVR------------AGCGIAAAITFHGILAPPPPDQDLSWCKHYSTGCRV-----------LVLHGGADPFVPPDQVRAFEAEMAAAGVQQCSVIVYDG-ARHAFTRPEKVLDSDRSAGLFYDAAAAEAGWAAMRGCLEQ 285          
BLAST of mRNA_L-elsbetiae_contig920.18224.1 vs. uniprot
Match: A0A7S0HUL7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HUL7_9CRYP)

HSP 1 Score: 171 bits (432), Expect = 2.560e-46
Identity = 109/264 (41.29%), Postives = 140/264 (53.03%), Query Frame = 1
Query:   94 IRRSVVDYNDGGTALQGLYARPEGEGLPDRLPGVILAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRAQSLAARRPITEDRSLMQGRVMAAVRTLGQMEEVDQEKLAAVGYCFGGMAVLDLARMA-RPDVEGDEDKAPLTVKAVASLHGILA-PILPGAGCKVSDDXXXXXXXXXXXXXXXXPFVPPDQVQAMELEFLRRGANLEIVRYGGEALHAFTRPEKTHHTDKHAGLSYCKHADEDSWRRVVGLLREEL 879
            +++S V Y++GG  L G    P+      ++P V+L HTAVG QED + WKL+A+A LG+ AF  DMFGTG ALWDR ++L ARR +  DR  M  RV AA  T+  + +VD     A+G+CFGGMAVLDLAR    P++E           A  S HGIL  P LP                         PFV  + +         R +N  +  Y G A HAFTRPEKT  +D  AGL Y + AD DS  R+ G+LR  L
Sbjct:   36 LKKSSVSYSEGGRELMGEACWPDVGN--QKMPAVLLVHTAVGLQEDFMRWKLEAVASLGFVAFGADMFGTGRALWDREEALEARRELVCDRRRMIDRVKAAATTMMSLPQVDPRGFGALGFCFGGMAVLDLARSGCMPNLE-----------ATVSFHGILDDPDLPD---DYGGREGPVPGEILVCHGEDDPFVSSENLNLFLENLKLRKSNFHLQAYPG-AKHAFTRPEKTEPSDFSAGLFYNEQADRDSSERMKGMLRRRL 282          
BLAST of mRNA_L-elsbetiae_contig920.18224.1 vs. uniprot
Match: A0A0G4EJ35_VITBC (DLH domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJ35_VITBC)

HSP 1 Score: 160 bits (404), Expect = 4.570e-42
Identity = 101/276 (36.59%), Postives = 143/276 (51.81%), Query Frame = 1
Query:   88 WNIRRSVVDYNDGGTALQGLYARPEGEGLPDRL----PGVILAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRAQSLAARRPITEDRSLMQGRVMAAVRTLGQMEEVDQEKLAAVGYCFGGMAVLDLARMARPDVEGDEDKAPLTVKAVASLHGILA-----PILPGAGCKV-----SDDXXXXXXXXXXXXXXXXPFVPPDQVQAMELEFLRRGANLEIVRYGGEALHAFTRPEKTHHTDKHAGLSYCKHADEDSWRRVVGLLRE 873
            W  +++ V Y D GT L GL    E +    ++    P V++  TAVG +ED +   LD  A LGY AF +DM+G G A+WD+ +S A R+P+T DR+ +Q R++AA +    + +V ++ +A VGYCFGGM  LDLAR   P            +K V S HG+L       +  G  C V     SDD                PF+ PDQ QA + E   +  + +I  YGG A H+FTRPEK    D+ AGL YC  ++  S+R     L++
Sbjct:   42 WTYKQTDVAYQDEGTELMGLAVWVERDDASRQILGERPCVLVCPTAVGLREDFLFGALDRYASLGYVAFGVDMYGEG-AVWDKGRSRAIRQPLTADRTKLQRRMVAAYQAAQSLPQVQEDNIAVVGYCFGGMCALDLARAGVP------------MKGVVSFHGVLDRPAVDKVPGGLSCPVLVHHGSDD----------------PFISPDQFQAFQQELSDQRTDWQIHIYGG-AKHSFTRPEKVTQADRDAGLQYCPKSERRSYRTTKAFLQD 287          
BLAST of mRNA_L-elsbetiae_contig920.18224.1 vs. uniprot
Match: A0A7S1HA30_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HA30_HEMAN)

HSP 1 Score: 157 bits (396), Expect = 4.910e-42
Identity = 93/215 (43.26%), Postives = 115/215 (53.49%), Query Frame = 1
Query:  226 EDMILWKLDAIARLGYAAFALDMFGTGHALWDRAQSLAARRPITEDRSLMQGRVMAAVRTLGQMEEVDQEKLAAVGYCFGGMAVLDLARMARPDVEGDEDKAPLTVKAVASLHGILAPILPGAGCKVSDDXXXXXXXXXXXXXXXXPFVPPDQVQAMELEFLRRGA-NLEIVRYGGEALHAFTRPEKTHHTDKHAGLSYCKHADEDSWRRVVGLL 867
            ED + WKLD +A  GY AF +DMFG G ALWD+ ++LAAR+P+ EDRS M  R+M A  T   ME  D  ++ A+GYCFGGMAVLDLAR   P           ++KA  SLHGIL         ++                   PFV P+ ++  E +   R A +L I  Y G   HAFTRPEKT   D  AGL YC+ AD  SW     LL
Sbjct:    1 EDFMFWKLDKLASQGYLAFGVDMFGAGRALWDKEEALAARKPLREDRSQMIERMMCAYETACSMEVADSARVGAIGYCFGGMAVLDLARSGLPK----------SLKATVSLHGILD--------RLDTPPTDVVGKVLVCHGGSDPFVTPEMLRDFESDMAARNAEDLHIHTYSGSK-HAFTRPEKTTEGDSAAGLYYCELADAASWAAASALL 196          
BLAST of mRNA_L-elsbetiae_contig920.18224.1 vs. uniprot
Match: A0A7S2XY83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY83_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.420e-34
Identity = 93/247 (37.65%), Postives = 122/247 (49.39%), Query Frame = 1
Query:   88 WNIRRSVVDYNDGGTA-LQGLYARPEGE--------GLPDRLPGVILAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGT------GHALWDRAQSLAARRPITEDRSLMQGRVMAAVRTLGQMEEVDQEKLAAVGYCFGGMAVLDLARMARPDVEGDEDKAPLTVKAVASLHGILAPILPGAGCKVSDDXXXXXXXXXXXXXXXXPFVPPDQVQAMELEFLRRGANLEIVRYGGEALHAFTRPEK 783
            + IRR+ + Y+D   A L GL A P  +         LP +LPGV++AHTAVG  +D ILWKL+AIA LGYAAFALDM+G           WDRA +   RR + EDR   Q R  A          VD+ ++AA+GYC+GGM VLDLA+   P            +K V ++HGIL             D                PFV  +Q+ A + +  +   +  I  + G   HAFTRPEK
Sbjct:   94 YTIRRTKIPYSDSTQARLSGLLAWPVQDPLPPAGAPALPPKLPGVLVAHTAVGNGDDFILWKLEAIASLGYAAFALDMYGEEASGAHNEGAWDRAVNAEVRRSLREDRLSQQARARAGYEVFASQPMVDESRMAALGYCYGGMVVLDLAKSGVP------------LKGVGTMHGIL-------DVPKELDTSLIQCPVQLYHGKADPFVSQEQLVAFQEDMNKNDISWNIHSFPGIG-HAFTRPEK 320          
BLAST of mRNA_L-elsbetiae_contig920.18224.1 vs. uniprot
Match: A0A5Q0BHN0_9GAMM (Dienelactone hydrolase family protein n=1 Tax=Candidatus Methylospira mobilis TaxID=1808979 RepID=A0A5Q0BHN0_9GAMM)

HSP 1 Score: 134 bits (337), Expect = 4.860e-33
Identity = 85/262 (32.44%), Postives = 131/262 (50.00%), Query Frame = 1
Query:   94 IRRSVVDYNDGGTALQGLYARPEGEGLPDRLPGVILAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRAQSLAARRPITEDRSLMQGRVMAAVRTLGQMEEVDQEKLAAVGYCFGGMAVLDLARMARPDVEGDEDKAPLTVKAVASLHGILAPILPGAGCKVSDDXXXXXXXXXXXXXXXXPFVPPDQVQAMELEFLRRGANLEIVRYGGEALHAFTRPEKTHHTDKHAGLSYCKHADEDSWRRVVGLLREEL 879
            IR  +V+Y+     LQG +A  + +  P   PGV+++H+ VG +++ +  K  A+A  G+AAFALDM+G G    +  ++    +P  +DR+L+QGR+++A+  L  +EEVD  K+AA+G+CFGG+ VLDLAR              + ++ VAS HG+L           +                  P  PP+ V A++ E    GA+ +   Y    +HAFT P      D   G  Y   AD  SW  ++  L E L
Sbjct:    3 IRTRLVEYHHDNVTLQGFFAWDDSKATPQ--PGVLISHSWVG-RDEFVCRKAIALAEAGHAAFALDMYGAGKTGSNPQENELLMKPFMQDRTLLQGRILSALHALRSLEEVDANKIAAIGFCFGGLCVLDLARTG------------IDIQGVASFHGLLT-------APENIPPHPISARILALHGHNDPLAPPEHVTALQKELTAAGADWQTHVYSN-TVHAFTNPLAN---DPGFGTVYNPAADRRSWTSLLNFLHEVL 238          
BLAST of mRNA_L-elsbetiae_contig920.18224.1 vs. uniprot
Match: A0A8D4VLE6_9GAMM (Carboxymethylenebutenolidase n=1 Tax=Methylogaea oryzae TaxID=1295382 RepID=A0A8D4VLE6_9GAMM)

HSP 1 Score: 132 bits (333), Expect = 1.780e-32
Identity = 93/262 (35.50%), Postives = 125/262 (47.71%), Query Frame = 1
Query:   94 IRRSVVDYNDGGTALQGLYARPEGEGLPDRLPGVILAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRAQSLAARRPITEDRSLMQGRVMAAVRTLGQMEEVDQEKLAAVGYCFGGMAVLDLARMARPDVEGDEDKAPLTVKAVASLHGILAPILPGAGCKVSDDXXXXXXXXXXXXXXXXPFVPPDQVQAMELEFLRRGANLEIVRYGGEALHAFTRPEKTHHTDKHAGLSYCKHADEDSWRRVVGLLREEL 879
            ++   +DY DG T LQG  A  + +  P  LPGV++AH   G  E  ++ K   IA LGYA FALDM+G         +  A   P  EDR+L+Q R+  A+  L +  EVD  ++AA+G+CFGG+ VLDLAR    D+ G             S HG+L P  PG     + D                P  P + V A++ E    GA+ ++  YG   +HAFT P      D   G  Y   AD  SWR +V  L E L
Sbjct:    2 LQTKTIDYCDGATRLQGYLAYDDAK--PGPLPGVLIAHPWAGRNE-FVMDKARCIAELGYAGFALDMYGDARVGEGAEECSALMMPFMEDRALLQRRMACALEALRRQPEVDAARVAAMGFCFGGLCVLDLARSGA-DLRG-----------AVSFHGLLKP--PG-----NTDGNAIQAKVLVLHGHDDPMAPVEDVTALKEELTAAGADWQVHVYGN-TVHAFTNPLAN---DPGFGTVYNAAADRRSWRSLVNFLAEVL 237          
BLAST of mRNA_L-elsbetiae_contig920.18224.1 vs. uniprot
Match: A0A4V1Z9F2_9GAMM (Dienelactone hydrolase family protein n=2 Tax=Methylococcaceae TaxID=403 RepID=A0A4V1Z9F2_9GAMM)

HSP 1 Score: 132 bits (333), Expect = 1.820e-32
Identity = 93/259 (35.91%), Postives = 127/259 (49.03%), Query Frame = 1
Query:  106 VVDYNDGGTALQGLYARPEGEGLPDRLPGVILAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRAQSLAARRPITEDRSLMQGRVMAAVRTLGQMEEVDQEKLAAVGYCFGGMAVLDLARMARPDVEGDEDKAPLTVKAVASLHGILAPILPGAGCKVSDDXXXXXXXXXXXXXXXXPFVPPDQVQAMELEFLRRGANLEIVRYGGEALHAFTRPEKTHHTDKHAGLSYCKHADEDSWRRVVGLLREELS 882
             +DY  G   L+G  A  E   LP  LP V++AH A G ++D +  K   +A LGYAAFALDM+G G       Q+    +P   DR+L+QGR+  A+  +  + +VD +++AA+G+CFGG+ VLDLAR       G E      ++ V S HG+    +P AG                      P VPP+QV A+  E    GA+ +I  YG    HAFT P      D   G  Y   AD  SW  +   LRE L+
Sbjct:    7 TIDYRHGPQPLEGFLAYDES--LPGPLPAVLIAH-AWGGRDDFVCGKARRLAELGYAAFALDMYGKGVLGTGPEQNAQLMQPFMADRALLQGRMQQALEVVKALPQVDPDRVAAMGFCFGGLCVLDLAR------SGAE------LRGVISFHGLF---VPPAGVP----NQPIRAKVLALHGYDDPMVPPEQVTALAQELTAAGADWQIHMYG-RTTHAFTNPAAN---DPGFGTVYDATADARSWLSLQSFLREVLT 239          
BLAST of mRNA_L-elsbetiae_contig920.18224.1 vs. uniprot
Match: A0A7S1J2W1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J2W1_9EUGL)

HSP 1 Score: 131 bits (330), Expect = 1.920e-32
Identity = 87/219 (39.73%), Postives = 110/219 (50.23%), Query Frame = 1
Query:  250 DAIARLGYAAFALDMFGTGHALWDRAQSLAARRPITEDRSLMQGRVMAAV---------RTLGQMEEVDQEKLAAVGYCFGGMAVLDLARMARPDVEGDEDKAPLTVKAVASLHGILAPILPGAGCKVSDDXXXXXXXXXXXXXXXXPFVPPDQVQAMELEFLRRGANLEIVRYGGEALHAFTRPEKTHHTDKHAGLSYCKHADEDSWRRVVGLLREEL 879
            +A+A LGY AFA+DM G G ALWD A++  AR P+ EDR L++ R+ AA+         + LG    +D +++AAVGYCFGG+ VLDLAR   P + G           V S HGIL     G G     +                PFVPPD+ +    E  RR A LE V + G A H FTRPEK    D  AG  Y   AD  SW  +   L + L
Sbjct:    1 EALASLGYVAFAVDMLGAGRALWDGAEAKTARAPLYEDRRLLRSRMQAALTAASADSFAQALGPNVALDLDRVAAVGYCFGGLCVLDLARGNAPGLRG-----------VVSFHGIL----DGGGLP-DPETDALRPRILVHNGDADPFVPPDKREQFLAEMGRRHAPLEFVSHPG-ARHGFTRPEKVQPADFAAGFGYDPQADAASWGSMKAFLADVL 202          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig920.18224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKZ2_9PHAE5.960e-13269.23DLH domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CLU0_9STRA2.400e-5041.61Dienelactone hydrolase family protein n=1 Tax=Trib... [more]
A0A7S0HUL7_9CRYP2.560e-4641.29Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A0G4EJ35_VITBC4.570e-4236.59DLH domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A7S1HA30_HEMAN4.910e-4243.26Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S2XY83_9STRA3.420e-3437.65Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A5Q0BHN0_9GAMM4.860e-3332.44Dienelactone hydrolase family protein n=1 Tax=Cand... [more]
A0A8D4VLE6_9GAMM1.780e-3235.50Carboxymethylenebutenolidase n=1 Tax=Methylogaea o... [more]
A0A4V1Z9F2_9GAMM1.820e-3235.91Dienelactone hydrolase family protein n=2 Tax=Meth... [more]
A0A7S1J2W1_9EUGL1.920e-3239.73Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig920contigL-elsbetiae_contig920:14474..17086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score291.6
Seed ortholog evalue3.1e-76
Seed eggNOG ortholog2880.D8LC04
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Dienelactone hydrolase family
EggNOG OGs2SB8C@2759,COG0412@1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1327
Cds size654
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816993.646187-UTR-L-elsbetiae_contig920:14473..147021622816993.646187-UTR-L-elsbetiae_contig920:14473..14702Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig920 14474..14702 +
1691683968.0905592-UTR-L-elsbetiae_contig920:14473..147021691683968.0905592-UTR-L-elsbetiae_contig920:14473..14702Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig920 14474..14702 +
1622816993.657138-UTR-L-elsbetiae_contig920:14970..149721622816993.657138-UTR-L-elsbetiae_contig920:14970..14972Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig920 14971..14972 +
1691683968.102987-UTR-L-elsbetiae_contig920:14970..149721691683968.102987-UTR-L-elsbetiae_contig920:14970..14972Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig920 14971..14972 +
1622816993.7233481-UTR-L-elsbetiae_contig920:16644..170861622816993.7233481-UTR-L-elsbetiae_contig920:16644..17086Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig920 16645..17086 +
1691683968.17243-UTR-L-elsbetiae_contig920:16644..170861691683968.17243-UTR-L-elsbetiae_contig920:16644..17086Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig920 16645..17086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816993.671614-CDS-L-elsbetiae_contig920:14972..151191622816993.671614-CDS-L-elsbetiae_contig920:14972..15119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 14973..15119 +
1691683968.1137767-CDS-L-elsbetiae_contig920:14972..151191691683968.1137767-CDS-L-elsbetiae_contig920:14972..15119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 14973..15119 +
1622816993.6814473-CDS-L-elsbetiae_contig920:15450..155241622816993.6814473-CDS-L-elsbetiae_contig920:15450..15524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 15451..15524 +
1691683968.1343882-CDS-L-elsbetiae_contig920:15450..155241691683968.1343882-CDS-L-elsbetiae_contig920:15450..15524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 15451..15524 +
1622816993.6919699-CDS-L-elsbetiae_contig920:15925..161571622816993.6919699-CDS-L-elsbetiae_contig920:15925..16157Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 15926..16157 +
1691683968.14857-CDS-L-elsbetiae_contig920:15925..161571691683968.14857-CDS-L-elsbetiae_contig920:15925..16157Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 15926..16157 +
1622816993.7053533-CDS-L-elsbetiae_contig920:16443..166441622816993.7053533-CDS-L-elsbetiae_contig920:16443..16644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 16444..16644 +
1691683968.1578352-CDS-L-elsbetiae_contig920:16443..166441691683968.1578352-CDS-L-elsbetiae_contig920:16443..16644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 16444..16644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig920.18224.1prot_L-elsbetiae_contig920.18224.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig920 14973..16644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig920.18224.1

>prot_L-elsbetiae_contig920.18224.1 ID=prot_L-elsbetiae_contig920.18224.1|Name=mRNA_L-elsbetiae_contig920.18224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
MILWKLDAIARLGYAAFALDMFGTGHALWDRAQSLAARRPITEDRSLMQG
RVMAAVRTLGQMEEVDQEKLAAVGYCFGGMAVLDLARMARPDVEGDEDKA
PLTVKAVASLHGILAPILPGAGCKVSDDAPLSVPRVLVLHATADPFVPPD
QVQAMELEFLRRGANLEIVRYGGEALHAFTRPEKTHHTDKHAGLSYCKHA
DEDSWRRVVGLLREELS*
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mRNA from alignment at L-elsbetiae_contig920:14474..17086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig920.18224.1 ID=mRNA_L-elsbetiae_contig920.18224.1|Name=mRNA_L-elsbetiae_contig920.18224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2613bp|location=Sequence derived from alignment at L-elsbetiae_contig920:14474..17086+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTAATTCGCCAAGCCTGGGCAAAGGATCAAACCAGCTTGGATAGTGT TGGCGACACCTCTTCGTCTTCCTCCTCCCCTTCGTCGTGGAACATCCGAC GTAGCGTCGTGGATTACAATGACGGAGGTACCGCCCTCCAAGGACTGTAC GCCAGGCCTGAGGGCGAGGGGCTTCCGGATAGACTCCCTGGAGTGATTCT CGCTCACACCGCCGTTGGCCCACAGGAAGGTACTGGACGCGGCTGCCAGC CGCCGATTTGTTTTTCGACATGACGTTTTTGAAAGCGTGTCCGCGTTGTG TCGTGTCCGGATGTGGATACGTCTCTCTGGCGTGGCGACTCAAATGGAGT CCACCGGAGTAGCCTAGCGACTTGAGCCACTGAAACTAAAAACCATGCCA TCTACGCTGTACATACGCCTGCCAAATCGGTATCTCCTCCCGCACCATTC GGGCAATTTCGTCTCAAAAGGCTCCCATTCCCTGCCGAATAATACAGACA TGATTCTGTGGAAGCTTGATGCGATCGCGCGGCTCGGATACGCCGCGTTC GCGCTGGATATGTTTGGGACGGGCCACGCTTTATGGGACCGCGCCCAGTC TCTAGCGGCGAGACGGCCTATCACCGAAGATCGGTCTCTGATGCAGGTGT AAATTACTGACAAACCTTAACCTTTGTTCTTACTGACTGGGTATTTTTCC CGACATGAGTACTACTTGGAATTTGAGTGGGGTTTTCGTACAGTAGTGAT AGGGCAGGTAGTTAGCATGATACCGTCTACGGACAGGCGTGCTCGGCTAG GTCCTTTCCTTCCGTGTTTCGTTATGGATAGTGGTATGGGTGCCCTGTTT ACGTATCAAGGCTGCCGTTTGGTTGCGCCCCCGGCCGAAGCGCTGGCGCC GAAGCGCTGGCAAAGAGTATTTATCAAGCTTGTAAAAATCATCTTTCTGA TTATCCCTCCTATCCAATGCGTACCAGGGTCGCGTGATGGCCGCCGTCCG AACGCTAGGCCAGATGGAAGAGGTGGATCAGGAGAAGTTAGCGGCGGTGG GGTGAGTACGTCGTGTTGCGCTTTGATTCTAATCGCTGAGTGCGAAGAGA CACTCTCTACACCAGTTTCTAAAGCCGAGAGTATGCGTGACAGCGAAAGG ATATTTAGATGCACAAATCCTCTTGCACAGAGTCGGTCAACACCCCAATC ATTCACGCTCGTAAGCGCGGAGTATGGCAACGCCGCCATCTTGGTTGTTT CAAGAAACATTAACATTGACACGAGGGCCATGGCACCATCAGCGCTGTCG GTTACGAAATGTGGTGCGATGACAAACATTCCATGTAACTTACAGTGTGT ACAAGTTCCCGCTTTCGCGGCAGCACGCGCCTTCTGAGATTTCACTACGG GCGATTTGATTGATGGCGGCTCATCTGATTTGATGCAAACGTGATGTTGC AGTTACTGTTTCGGCGGGATGGCTGTCTTGGATCTCGCGAGGATGGCGCG GCCTGATGTCGAAGGCGACGAAGACAAAGCCCCGCTCACGGTAAAGGCTG TGGCGTCGCTGCACGGAATTTTGGCCCCAATTTTACCCGGGGCCGGGTGC AAGGTTTCGGATGACGCCCCTCTAAGCGTACCAAGGGTACTTGTCTTGCA TGCCACCGCGGATCCGTTCGTGCCTCCCGACCAGGTGCGATATCGTGAGC TGTATATGTACGTACCACAAGGAGCGAACCCTGAGTTAGATATGTACGGA GTAGCCAAATTGGGACTCGTTTCGGTGTTGAGGCAGTGCAGGTTTGGTGT GTTGTTTGCATGTGAACTGGAAGCTGGTCACGAGATTCTTTCCGCGGAAC TAGCAAGCTATGGAGGGCCCGGATGAGCCGCACACAGTAGTACGGCCGAG CACGTTTAAACCCTCCTCTCTCGTTCCCTTCCATTTCTTGTTCTGATCAC GTCGCTGACCAATCGTGTAGGTGCAAGCGATGGAGTTGGAGTTCTTGCGG CGAGGGGCCAATCTGGAAATCGTGAGGTATGGGGGTGAGGCGTTGCACGC CTTCACGCGACCGGAGAAGACTCATCACACAGACAAGCACGCCGGGCTGT CGTACTGCAAGCACGCCGACGAGGATTCGTGGCGGCGGGTTGTCGGTTTG CTACGGGAGGAACTGAGCTGAAGAAGGGATGGAAAGTTGCTTCACAAGTG CATCATTTGGCCGGCTAGGTTTTCTGTTCTAGCTTTAGCTGTTCTTGGCA GTGGATATTTCGGGGCTATTTGTCAGCTTGCTACAAGAAGAACGGCTTAA TTGAGCTGCGCGTAATAAAAAAGTCATCCCGCACGCATGCAGCTATTGTA CAGAGCAGTATCTAGTTGCCTAGTCGCCCCGAGAAGAGAATACCTAGGTT CACGACGTTGGTCTTTTACCCCACTCATGTATGAAAAGCCAAGTCTTGCC ATGGGGGTGGCGTAAGGTATAGGCAACAAGATAGGAACATTTCGCGTTCG TTTCCCGCGGTTGACTGGAACTTTGATACAGGTTGACTCTAGGTCAAGTA TGGTGCGGGGGTCGACTCGCTCATGTAGAAAAGTGTCGAAAATCGTATTC CGGCCCCAACTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig920:14474..17086+

>mRNA_L-elsbetiae_contig920.18224.1 ID=mRNA_L-elsbetiae_contig920.18224.1|Name=mRNA_L-elsbetiae_contig920.18224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig920:14474..17086+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTCTGTGGAAGCTTGATGCGATCGCGCGGCTCGGATACGCCGCGTT
CGCGCTGGATATGTTTGGGACGGGCCACGCTTTATGGGACCGCGCCCAGT
CTCTAGCGGCGAGACGGCCTATCACCGAAGATCGGTCTCTGATGCAGATG
ATTCTGTGGAAGCTTGATGCGATCGCGCGGCTCGGATACGCCGCGTTCGC
GCTGGATATGTTTGGGACGGGCCACGCTTTATGGGACCGCGCCCAGTCTC
TAGCGGCGAGACGGCCTATCACCGAAGATCGGTCTCTGATGCAGGGTCGC
GTGATGGCCGCCGTCCGAACGCTAGGCCAGATGGAAGAGGTGGATCAGGA
GAAGTTAGCGGCGGTGGGGGTCGCGTGATGGCCGCCGTCCGAACGCTAGG
CCAGATGGAAGAGGTGGATCAGGAGAAGTTAGCGGCGGTGGGTTACTGTT
TCGGCGGGATGGCTGTCTTGGATCTCGCGAGGATGGCGCGGCCTGATGTC
GAAGGCGACGAAGACAAAGCCCCGCTCACGGTAAAGGCTGTGGCGTCGCT
GCACGGAATTTTGGCCCCAATTTTACCCGGGGCCGGGTGCAAGGTTTCGG
ATGACGCCCCTCTAAGCGTACCAAGGGTACTTGTCTTGCATGCCACCGCG
GATCCGTTCGTGCCTCCCGACCAGTTACTGTTTCGGCGGGATGGCTGTCT
TGGATCTCGCGAGGATGGCGCGGCCTGATGTCGAAGGCGACGAAGACAAA
GCCCCGCTCACGGTAAAGGCTGTGGCGTCGCTGCACGGAATTTTGGCCCC
AATTTTACCCGGGGCCGGGTGCAAGGTTTCGGATGACGCCCCTCTAAGCG
TACCAAGGGTACTTGTCTTGCATGCCACCGCGGATCCGTTCGTGCCTCCC
GACCAGGTGCAAGCGATGGAGTTGGAGTTCTTGCGGCGAGGGGCCAATCT
GGAAATCGTGAGGTATGGGGGTGAGGCGTTGCACGCCTTCACGCGACCGG
AGAAGACTCATCACACAGACAAGCACGCCGGGCTGTCGTACTGCAAGCAC
GCCGACGAGGATTCGTGGCGGCGGGTTGTCGGTTTGCTACGGGAGGAACT
GAGCTGAGTGCAAGCGATGGAGTTGGAGTTCTTGCGGCGAGGGGCCAATC
TGGAAATCGTGAGGTATGGGGGTGAGGCGTTGCACGCCTTCACGCGACCG
GAGAAGACTCATCACACAGACAAGCACGCCGGGCTGTCGTACTGCAAGCA
CGCCGACGAGGATTCGTGGCGGCGGGTTGTCGGTTTGCTACGGGAGGAAC
TGAGCTGA
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