mRNA_L-elsbetiae_contig92.18218.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig92.18218.1
Unique NamemRNA_L-elsbetiae_contig92.18218.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig92.18218.1 vs. uniprot
Match: D7FK87_ECTSI (Similar to Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK87_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 1.250e-125
Identity = 207/293 (70.65%), Postives = 224/293 (76.45%), Query Frame = 3 
Query:   42 SASVVSPRGAVLELLPLEADNAAGDSGYSIRWFEEENPAVFDQQATASLQSRLVLSGLSPGTRYVASVRRTDRTRIGVVQAE---EAAGEVRFSTPEAEGNASGEMTELSRLEIRVGRCLEATKHPDADSLYVENVDFGEGEPR-------TIVSGLVAYVPEEEMRGRMVLGLCNLPERAMRGVTSAGMLLCASNDDHTIVDPLSPPEGAKVGELVTFEGVLSAPAPPGGAASRAWSATMEGMKTTGTRSVPSAVPPEGDDGGGGGVAGWNGRPMQTSAGPCTSTVVAGRVR 890
            +ASVVS R AV+EL PL  D      GYS++WFEE+NPA+FDQ ATASLQSRLVLS LSPGT YVA VRRT          E    AA E+RFSTPEAEGNASGEM ELSRLEIRVGRCLE +KHPDADSLYVE VDFGEGEPR       TIVS LVAYVPE EMRGRMV+GLCNLP RAMRGVTS+GMLLCASNDDH+ VDPLSPPEGAK+GEL+TFE VLSAPAPP   ASRAWSATMEGMKT    +    V          GVAGW+GRPM TSAG CTS++ AGRVR
Sbjct:   18 AASVVSAREAVVELPPLGGDGV----GYSVKWFEEDNPAIFDQ-ATASLQSRLVLSDLSPGTEYVAVVRRTATAAAAAPAGEAGDNAARELRFSTPEAEGNASGEMMELSRLEIRVGRCLECSKHPDADSLYVETVDFGEGEPRCLGPVDKTIVSRLVAYVPENEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITFESVLSAPAPPSSGASRAWSATMEGMKTA--EATADGV----------GVAGWDGRPMLTSAGACTSSIAAGRVR 293
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BLAST of mRNA_L-elsbetiae_contig92.18218.1 vs. uniprot
Match: A0A6H5KCD4_9PHAE (tRNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD4_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 1.460e-89
Identity = 139/181 (76.80%), Postives = 151/181 (83.43%), Query Frame = 3 
Query:  348 MTELSRLEIRVGRCLEATKHPDADSLYVENVDFGEGEPRTIVSGLVAYVPEEEMRGRMVLGLCNLPERAMRGVTSAGMLLCASNDDHTIVDPLSPPEGAKVGELVTFEGVLSAPAPPGGAASRAWSATMEGMKTTGTRSVPSAVPPEGDDGGGGGVAGWNGRPMQTSAGPCTSTVVAGRVR 890
            M ELSRLEIRVGRCLE +KHPDADSLYVE +DFGEGEPRTIVSGLVAYVPE+EMRGRMV+GLCNLP RAMRGVTS+GMLLCASNDDH+ VDPLSPPEGAK+GEL+TFEGVLSAPAPP   ASRAWSAT EGMKT    +    V          GVAGW+GRPM TSAG CTS++ AGRVR
Sbjct:    1 MMELSRLEIRVGRCLECSKHPDADSLYVETIDFGEGEPRTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITFEGVLSAPAPPSSGASRAWSATREGMKTA--EATADGV----------GVAGWDGRPMLTSAGACTSSIAAGRVR 169
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BLAST of mRNA_L-elsbetiae_contig92.18218.1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 186 bits (473), Expect = 1.580e-53
Identity = 114/232 (49.14%), Postives = 138/232 (59.48%), Query Frame = 3 
Query:  195 RLVLSGLSPGTRYVASVR------RTDRTRIGVVQAEEAAGEVRFSTPEAEGNASGEM--TELSRLEIRVGRCLEATKHPDADSLYVENVDFGEGEPRTIVSGLVAYVPEEEMRGRMVLGLCNLPERAMRGVTSAGMLLCASNDDHTIVDPLSPPEGAKVGELVTFEGVLSAPAPPGGAASRAWSATMEGMKTTGTRSVPSAVPPEGDDGGGGGVAGWNGRPMQTSAGPCTS 866
            R+ L GL PGT Y   V        T  T +   QA  A G+         G+++ ++  TELSRLEIRVG+ +E  KHPDAD+LYVE VD GE EPRTIVSGLV Y+P E+M GR V+ LCNL  RAMRGVTS GMLLCASN+DHT+VDPL  P+   +GELVTFEG  SAP  P   A++A+    +G+ T                    GVA +   P  TSAGPC S
Sbjct:   65 RVNLKGLKPGTPYDVRVTGDAFDSSTSFTTVATAQAPAAVGD---------GDSAPDLPLTELSRLEIRVGKIIECEKHPDADTLYVEKVDVGEEEPRTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTFEGHKSAPIDPSNRATKAFDRVADGLSTNEA-----------------GVAMFEDVPFSTSAGPCFS 270
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BLAST of mRNA_L-elsbetiae_contig92.18218.1 vs. uniprot
Match: A0A7S0FZY8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0FZY8_9RHOD)

HSP 1 Score: 179 bits (453), Expect = 2.060e-50
Identity = 109/260 (41.92%), Postives = 148/260 (56.92%), Query Frame = 3 
Query:  105 AAGDSGYSIRWFEEENPAVFDQQATASLQSRLVLSGLSPGTRYVASVRRTDRTRIGVVQAEEAAGEVRFSTPEAEGNASGE------MTELSRLEIRVGRCLEATKHPDADSLYVENVDFGEGEPRTIVSGLVAYVPEEEMRGRMVLGLCNLPERAMRGVTSAGMLLCASNDDHTIVDPLSPPEGAKVGELVTFEGVLSAPAPPGGAASRAWSATMEGMKTTGTRSVPSAVPPEGDDGGGGGVAGWNGRPMQTSAGPCTS 866
            A+G   Y + +  + NPA F        +S ++L GLSPG+ Y  S+   D  ++    +  +   +   TPE+ G  S +      +TELSRLEIR G  ++  KHP+AD+LYVE +D GE EPRTIVSGLV ++ EEE+ GR V+ LCNL  R MRG+ S GMLLCASN DH+ VDPLSPPE    GEL+TF+G  SAP  PG  A++A+    + + T              +DG    +A +     +T  GPC S
Sbjct:   46 ASGSRAYRVAYKSDSNPASF----RTVTRSSVILKGLSPGSSYDMSISELDSKKL---LSRASFTTMSAETPESAGAESEKQAEDLPLTELSRLEIRAGTVVQCKKHPEADTLYVETIDVGEQEPRTIVSGLVKFLSEEELTGRRVVVLCNLKPRTMRGIISQGMLLCASNADHSEVDPLSPPEECGNGELITFDGHKSAPIDPGNRATKAFDRVADDLSTN-------------EDG----IAQYQDAAFKTPFGPCYS 281
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BLAST of mRNA_L-elsbetiae_contig92.18218.1 vs. uniprot
Match: W7U6C4_9STRA (Endothelial monocyte-activating polypeptide ii pro-emap ii family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C4_9STRA)

HSP 1 Score: 179 bits (455), Expect = 6.630e-50
Identity = 107/230 (46.52%), Postives = 141/230 (61.30%), Query Frame = 3 
Query:  201 VLSGLSPGTRYVASVRRTDRTRIGVVQAEEAAGEVRFSTPEAEGNASGEMTELSRLEIRVGRCLEATKHPDADSLYVENVDFGEGE-PRTIVSGLVAYVPEEEMRGRMVLGLCNLPERAMRGVTSAGMLLCASNDDHTIVDPLSPPEGAKVGELVTFEGVLSAPAPPGGAASRAWSATMEGMKTTGTRSVPSAVPPEGDDGGGGGVAGWNGRPMQTSAGPCTSTVVAGRV 887
            ++ GL  G++Y  +V R +R  +    AE+  G  R  T +      GE+TELSRLEIR G+ LE ++HP+AD LYVE +D GE + PRTIVSGLV Y  EEE+ GR V+ L NL  RA++G+TS GMLLCASN+DHT+V PLSPP G  +GEL+TFEG  +AP PPG  A +A+    E +               G+D     +A + G P  TS GP T T +AG +
Sbjct:  152 MIRGLHAGSQYDVAVVRVEREGL----AEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGA-------------GEDM----IATYKGIPFMTSKGPVT-TGMAGSI 359
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BLAST of mRNA_L-elsbetiae_contig92.18218.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 165 bits (418), Expect = 6.330e-46
Identity = 100/209 (47.85%), Postives = 126/209 (60.29%), Query Frame = 3 
Query:  249 RTDRTRIGVVQAEEAAGEVRFSTPEA-EGNASGEM--TELSRLEIRVGRCLEATKHPDADSLYVENVDFGEGEPRTIVSGLVAYVPEEEMRGRMVLGLCNLPERAMRGVTSAGMLLCASNDDHTIVDPLSPPEGAKVGELVTFEGVLSAPAPPGGAASRAWSATMEGMKTTGTRSVPSAVPPEGDDGGGGGVAGWNGRPMQTSAGPCTS 866
            R+ RT + V Q  EA+GE   +  +  + N   E+  TELSRLEIRVG+ +E  +HPDAD+LYVE VD GE EPRTIVSGLV ++ +EE+ GR V+ LCNL  RAMRG+ S GMLLCASN+DHT VDPL+ P  A +G L+TFEG  +AP   G  AS+A+        T                    G+A +N  P  T AG C S
Sbjct:   32 RSQRTHLIVRQMCEASGESDENKVQVVDRNYEEELPLTELSRLEIRVGKVVECERHPDADTLYVEKVDVGEDEPRTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDAD-----------------GIARFNATPFMTEAGACYS 223
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BLAST of mRNA_L-elsbetiae_contig92.18218.1 vs. uniprot
Match: A0A7S1TKX4_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TKX4_9RHOD)

HSP 1 Score: 167 bits (423), Expect = 1.830e-45
Identity = 107/228 (46.93%), Postives = 129/228 (56.58%), Query Frame = 3 
Query:  120 GYSIRWFEEENPAVFDQQATASLQSRLVLSGLSPGTRYVASVR----------RTDRTRIGVVQAEE--AAGEVRFSTPEAEGNA-SGE---MTELSRLEIRVGRCLEATKHPDADSLYVENVDFGEGEPRTIVSGLVAYVPEEEMRGRMVLGLCNLPERAMRGVTSAGMLLCASNDDHTIVDPLSPPEGAKVGELVTFEGVLSAPAPPGGAASRAWSATMEGMKTTG 755
            G+ +R+   E  A          Q  + L+G+ P   Y A ++          RT + R   +   E  A G+     P  EG   SG    +TE SRLEIRVGR LE  KHPDAD+LYVE VD GE E RTIVSGLV YVP +EM GR V+ LCNL  RAMRGVTS GMLLCASN+DHT VDPL+ PE   +G L+T  G  SAP   G  AS+A+       +T G
Sbjct:   78 GFRVRYSPVEMAAAGIWSWRTVSQPMVRLAGMRPAVSYTAGIQPLFGSAANEWRTTQFRTHAISGGEIDAVGQDPVGVPAGEGGVDSGNDAPVTEFSRLEIRVGRILECEKHPDADTLYVEKVDVGEPETRTIVSGLVKYVPLDEMIGRTVVVLCNLKPRAMRGVTSFGMLLCASNEDHTEVDPLTAPEDTPIGTLITAPGHRSAPVEAGNRASKAFDRVAAQFRTDG 305
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BLAST of mRNA_L-elsbetiae_contig92.18218.1 vs. uniprot
Match: A0A0G4FLN6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FLN6_9ALVE)

HSP 1 Score: 162 bits (409), Expect = 4.990e-44
Identity = 113/285 (39.65%), Postives = 145/285 (50.88%), Query Frame = 3 
Query:   39 VSASVVSPRGAVLELLPLEADNAAGDSGYSIRWFEEENPAVFDQQATASLQSRLVLSGLSPGTRYVASVRRTDRTRIGVVQAEEAAGEVRFSTPEAEGNASGEMTELSRLEIRVGRCLEATKHPDADSLYVENVDFGEGEPRTIVSGLVAYVPEEEMRGRMVLGLCNLPERAMRGVTSAGMLLCASNDDHTIVDPLSPPEGAKVGELVTFEGVLSAPAPPGGAASRAWSATMEGMKTTGTRSVPSAVPPEGDDGGGGGVAGWNGRPMQTS--AGPCTSTVVAGRV 887
            + A+ V+P  A +    +E   +A           E      + Q    L   L L+GLSP T Y   +   +     V        E   STP    +  G +TELSRLE+R GR +    HP+ADSLYVE +D GE +PRTIVSGL  +   EE++ R V+ LCNL  RAMRGV SAGMLLCAS++  + V+PL+PP G K GELV FEG  S P  PG  A RA+     G+ T   + V  A          GG  G    P+  S   GPCT+ +  GRV
Sbjct:    4 IDATEVNPSTATIRFTGIEEFGSAYPKFQIKVQAHESEGGASNMQIVKDLSHPLRLTGLSPATSYKIRLFAVEDEPPAVSPTFTQLQETAISTP---ADNQGALTELSRLEVRAGRIVSVEAHPNADSLYVETIDVGEEKPRTIVSGLRKFCTLEELQNREVVVLCNLKPRAMRGVVSAGMLLCASDEGKSKVEPLAPPPGTKPGELVMFEGSSSRPCTPGDRAGRAFEKVAAGLVTD-DKGVARAKTT-------GGPFGELEEPVTFSLPGGPCTAGITNGRV 277
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BLAST of mRNA_L-elsbetiae_contig92.18218.1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP)

HSP 1 Score: 161 bits (407), Expect = 5.550e-44
Identity = 105/221 (47.51%), Postives = 126/221 (57.01%), Query Frame = 3 
Query:  210 GLSPG-TRYVASVRRTDRTRIGVVQAEEAAGEVRFSTPEAEGNASGEMTELSRLEIRVGRCLEATKHPDADSLYVENVDFG-EGEPRTIVSGLVAYVPEEEMRGRMVLGLCNLPERAMRGVTSAGMLLCASNDDHTIVDPLSPPEGAKVGELVTFEGVLSAPAPPGGAASRAWSATMEGMKTTGTRSVPSAVPPEGDDGGGGGVAGWNGRPMQTSAGPCTS 866
            G  PG TR  A   R      G    E AAG    S P         +TELSRLEIRVG+ ++  KHP+ADSLYVE VD G E   R IVSGLV++VP EEM  R V+ LCNL  R MRG++S GMLLCASN+DH+ VDPL+ PEG  +G LVTFEG  S PAP G  AS+A+    + ++T  T                 GVA +   P  T +GPC S
Sbjct:   54 GAFPGATREGAGRMRMSSLEDGSAALETAAGNEGESLP---------LTELSRLEIRVGKIIKCEKHPEADSLYVEEVDVGDESGARVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQVDPLTAPEGVPIGALVTFEGHRSEPAPAGNRASKAFDKVAKSLRTDAT-----------------GVAMFEQVPFATPSGPCFS 248
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BLAST of mRNA_L-elsbetiae_contig92.18218.1 vs. uniprot
Match: D7FMW6_ECTSI (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW6_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 3.140e-43
Identity = 89/173 (51.45%), Postives = 118/173 (68.21%), Query Frame = 3 
Query:  213 LSPGTRYVASVRRTDRTRIGVVQAEEAAGEVRFSTPEAEGNASGEMTELSRLEIRVGRCLEATKHPDADSLYVENVDFGEGE---PRTIVSGLVAYVPEEEMRGRMVLGLCNLPERAMRGVTSAGMLLCASNDDHTIVDPLSPPEGAKVGELVTFEGVLSAPAPPGGAASRAW 722
            L+   R  A++RR    R  ++ ++ A  E   + P A    +GE+TEL+RLEIR+G+ +E  +HPDADSLYVE VD G+GE   PRTIVSGLV +  E ++ GR V+ LCNL    M+GVTSAGMLLC+SN+DH+ V+PL PPEG  +GELVTF+G L +P   G  A +AW
Sbjct:   48 LTSSVRPQAALRRPTAVRTMMMMSDAAVTEEE-AAPAA---PTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPRTIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSKVEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAW 216
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig92.18218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK87_ECTSI1.250e-12570.65Similar to Tyrosyl-tRNA synthetase, cytoplasmic (T... [more]
A0A6H5KCD4_9PHAE1.460e-8976.80tRNA-binding domain-containing protein n=1 Tax=Ect... [more]
A0A2V3IUX7_9FLOR1.580e-5349.14Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]
A0A7S0FZY8_9RHOD2.060e-5041.92Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
W7U6C4_9STRA6.630e-5046.52Endothelial monocyte-activating polypeptide ii pro... [more]
A0A7S0ZE83_9RHOD6.330e-4647.85Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A7S1TKX4_9RHOD1.830e-4546.93Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
A0A0G4FLN6_9ALVE4.990e-4439.65Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A5J4Z2W6_PORPP5.550e-4447.51Putative methionine--tRNA ligase n=1 Tax=Porphyrid... [more]
D7FMW6_ECTSI3.140e-4351.45Endothelial monocyte-activating polypeptide II pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig92contigL-elsbetiae_contig92:7718..12898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.2
Seed ortholog evalue4.4e-68
Seed eggNOG ortholog2880.D7FK87
Preferred nameYARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001664,GO:0002682,GO:0002685,GO:0002688,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005102,GO:0005126,GO:0005153,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006915,GO:0006935,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009605,GO:0009966,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010758,GO:0012501,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0023051,GO:0030334,GO:0030545,GO:0031974,GO:0031981,GO:0032101,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0040012,GO:0042056,GO:0042221,GO:0042330,GO:0042379,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045236,GO:0046483,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050918,GO:0050920,GO:0051270,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905521,GO:2000145
EggNOG free text desc.tRNA binding
EggNOG OGsCOG0143@1,KOG2241@2759
EC6.1.1.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-17_003170.1
Exons5
Model size1041
Cds size546
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816992.9450996-UTR-L-elsbetiae_contig92:7717..78651622816992.9450996-UTR-L-elsbetiae_contig92:7717..7865Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig92 7718..7865 -
1691683967.5168884-UTR-L-elsbetiae_contig92:7717..78651691683967.5168884-UTR-L-elsbetiae_contig92:7717..7865Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig92 7718..7865 -
1622816992.991566-UTR-L-elsbetiae_contig92:9739..97631622816992.991566-UTR-L-elsbetiae_contig92:9739..9763Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig92 9740..9763 -
1691683967.5655873-UTR-L-elsbetiae_contig92:9739..97631691683967.5655873-UTR-L-elsbetiae_contig92:9739..9763Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig92 9740..9763 -
1622816993.0012615-UTR-L-elsbetiae_contig92:11033..111861622816993.0012615-UTR-L-elsbetiae_contig92:11033..11186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig92 11034..11186 -
1691683967.5756714-UTR-L-elsbetiae_contig92:11033..111861691683967.5756714-UTR-L-elsbetiae_contig92:11033..11186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig92 11034..11186 -
1622816993.0119534-UTR-L-elsbetiae_contig92:12728..128981622816993.0119534-UTR-L-elsbetiae_contig92:12728..12898Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig92 12729..12898 -
1691683967.5866103-UTR-L-elsbetiae_contig92:12728..128981691683967.5866103-UTR-L-elsbetiae_contig92:12728..12898Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig92 12729..12898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816992.9589078-CDS-L-elsbetiae_contig92:7865..81451622816992.9589078-CDS-L-elsbetiae_contig92:7865..8145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig92 7866..8145 -
1691683967.5355904-CDS-L-elsbetiae_contig92:7865..81451691683967.5355904-CDS-L-elsbetiae_contig92:7865..8145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig92 7866..8145 -
1622816992.9689543-CDS-L-elsbetiae_contig92:8693..88431622816992.9689543-CDS-L-elsbetiae_contig92:8693..8843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig92 8694..8843 -
1691683967.5460126-CDS-L-elsbetiae_contig92:8693..88431691683967.5460126-CDS-L-elsbetiae_contig92:8693..8843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig92 8694..8843 -
1622816992.9792204-CDS-L-elsbetiae_contig92:9623..97391622816992.9792204-CDS-L-elsbetiae_contig92:9623..9739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig92 9624..9739 -
1691683967.5556414-CDS-L-elsbetiae_contig92:9623..97391691683967.5556414-CDS-L-elsbetiae_contig92:9623..9739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig92 9624..9739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig92.18218.1prot_L-elsbetiae_contig92.18218.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig92 7866..9739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig92.18218.1

>prot_L-elsbetiae_contig92.18218.1 ID=prot_L-elsbetiae_contig92.18218.1|Name=mRNA_L-elsbetiae_contig92.18218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
MTELSRLEIRVGRCLEATKHPDADSLYVENVDFGEGEPRTIVSGLVAYVP
EEEMRGRMVLGLCNLPERAMRGVTSAGMLLCASNDDHTIVDPLSPPEGAK
VGELVTFEGVLSAPAPPGGAASRAWSATMEGMKTTGTRSVPSAVPPEGDD
GGGGGVAGWNGRPMQTSAGPCTSTVVAGRVR*
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mRNA from alignment at L-elsbetiae_contig92:7718..12898-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig92.18218.1 ID=mRNA_L-elsbetiae_contig92.18218.1|Name=mRNA_L-elsbetiae_contig92.18218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5181bp|location=Sequence derived from alignment at L-elsbetiae_contig92:7718..12898- (Laminarionema elsbetiae ELsaHSoW15)
CCCCGATCCCGGCGGCAACCGGCTTGCCGACGCCGCCGGTGTCGGCATCG
GTGGTCTCACCGAGGGGGGCCGTCCTTGAGCTGCTTCCCCTAGAGGCCGA
CAACGCCGCCGGTGACAGCGGCTACTCGATCCGGTGGTTTGAGGAAGAGA
ACCCGGCCGTGTTCGACCAGGTATGTACTGGTATATATATATATATGTTT
TTTGTTTTTTTCTCTTCACATACGGAGTATTTATTTCCAGTGCTCGATGG
GCTCCCTGTCACGAGAACATCTTGCCAGAGTACTGAACCATGGTCACACA
GAAGGGTCCCTTTCATGTATATATGTGGAGAAAATAATAACTTGAGCTTT
ATTTGTGCGTACCGTATTTAGGTGACACAAGATACCACACCCCCTGGACA
GATTTTCAAAGCTCGATTCTTCCCCAGCAAGAAGAGTGCCAGAGGCGGAA
GGGATGGCGCTGGAAAGTTCTAGTCGAGGGCTGTCCAAAAATGTTGTCAT
TTGGTGCTGGTGCCCTCTTTGTTACGGAGTAATAGAGCCTCTAAAATTAT
GTCCAGGAGGTGTGGTATCTTGTGTCACCTACGGTAGTTTGAAGCTTCTC
CGATCGTCTTTCATGTTGGATGTGTATTCAATATTTATTTGGCTTTTTAG
GTTTTTGTGTATTTTGGCAACATGTCGGCCTCCAGACAGACGGACGCGCT
TCTTGATTCCCTCCAAGTCAGTCAAAGTGCAGCTGTATGAGGCACGTTAT
GTGTGTGTACGTTATGTGTGTGTGTGTGTGTGTGTGTGTGTCCTTCCCAT
TTATTTTGGCGACAGTTCTTTTTTATGTTTCTTTCTTTGCCCCACCTTTT
TCCTCGTGCGGTGCTTGCTCTCATTTTTATCGCGAGAAGGGTTCAGCTGT
CCCTTTCCCTTGTCGACGTCTGTGTATGTAACCTTTTTGTGGAGGCTCGT
CACAGCCTGTTGCACGTGACTGTATTTTTCCCGTTTCAGAGATCACTCTC
GTGCTGTCTCTTGCCCTCACTTCGGGTTTTCTTATGCAAAACCTCTAGGG
ACTTCTGTCAAGTAGCAATTGATAGGCGGAAAATTGAGGAACCCCAAGGC
AACCTACGTACCTGCCTAGGATACCAGCGCGTTTTCTTGCCTCATTTGCG
TTGAGTTTTTTTTTGCGCTTGCCACGAAGTTTTTCGTTTTTACGATGCGT
ATTGCTGTGTGTTCGCTCGAACCCTGTCGTGTAGCGGCCGGCCTGCGGCC
TGCCGCCCCCCCCCCCTGCTCTCGCATACGGCGGTGCCCCCTTTCGATGC
TCTCGATGAGAAGGGACCCCGCCTTCGGCCGAGCTGCAGCGCTGTGGCGG
GCGTTGCTTTCTCCATTCATCCCAGGGTGCGACACAGCAGCAGGGCAAGA
AAACCCCTGCTGGCGCTTGATCGGCTACCACCCCCCCCCCCCCCCCCCCC
CCCCCCCCGCCCGCCCCCCCCCCCCCCGCTCTCTTTGTCTACCGCCCCCC
CCTTCCGCCNNNNNNNNNNGATGCTGTGTGAGAACAGCCTCACTGTGGAA
CAGGAGACGAACAAACGAGACAAACGATGAACATGAAGCCTGTATTTGCC
CTGCGGAATGCTCATCAGCCTTGCTTCACTTCAGCCCCCCCCCTCTCTTC
AACCTTGGCGTGCCCCACCCATCCTTGTTTTCATGTATACGGTACACCCT
TTGCGGCCAGAGCAGGCCACGGCGTCTCTTCAGTCTAGGTTAGTCCTGTC
GGGCCTCTCCCCGGGCACAAGATACGTGGCGAGCGTGCGGAGAACGGATA
GAACGCGGATAGGAGTGGTGCAAGCAGAAGAGGCGGCCGGCGAAGTCCGC
TTCTCGACACCCGAGGTGTGTGTGTGTGTGTTTGCTAAGAAGGCGTTATC
CTTTTGTTCCGCACTCGTAAATGGTAGGTATGTTAGATAACCATTTGTGT
TTGTTTATACTACTGTAAATACATAGAAGTACAATGTTTCGCTCCTCGAG
GGCGTGAAAGCGTCAGAAGTGCGTGTTTTCGTTACTTTTCTCTACATACA
ATGTTTCGCTCCTCGAGAGCGTGAAAGCGCCAGAGGTGTGTGCTTTCGTT
ACGTTGGAGTTAGGTTCAGGATTATGTATTGCCTCGAGTGCGAGTGCATG
ACTGCATGATGTCATCCAGGTAGGTGGCGTGGACCCAGTAGGCTCGGCCG
TTGGGGTTGTATGTATGTATGTACGTATGTATGTGGGGTTATAGCGTTGG
TGGCTTTTCAGCGATCGTTTTTCTTGTGACTGCTGTTTGGCTTGGTCACA
GCCTGTGCTGCTTTCACAACAGTATGTCTACTCGAACATGGTGTTGTTGT
TATTGCTGTTGCTGTTGCTTCTTCGCCTTAAAAACGGTTCCGATATCTCC
ACCCAGTACCTCTATATGGGCGTATTAATTCCAGCACTTGATGCGGTCGA
TTCCCGTGGTCACAGGCTGACTTACATGGTACATACCTAAAAGAGAGAAC
ATGGGGCAGGGTTGTTGTTTCGTCGCATGACATGTACTCCGAAGTATTAA
GGCAGACACAACAACAGGAATTACAACGACAGCCACGGCAACGACGACGA
GAGCTGTAACAACAGCTTACATTTCCAAGACCGCCACAACCCTGAATTTG
ACTGCCACAACAACAGGAAACAACGACAGCTGTAACGACAGCTTACATTT
CGAGACCACCACAACCCTGGTTTTGACTTGCCACAAGAACGACGACAGCT
GTAAGTAACAACAGCTTACATTTCCAAGACCGCCACAACCCTGAATTTGA
CTGCCACAACAACAGGAAACAAGGACAGCTGTGACAACAGCTTACATTTC
AAGACCACCACAGCCCTGAATTTGACTGCCACAACAACAGGAAGCAACGA
CAGCTGTGACGACAGCTTACATTTCAAGACCACCGCAACCCTGATTTTGA
CTTGCCACAACAACGACGACATCTGTAGCAACAGCGTACATTCCAAGACC
GCCACAACCCTGATTTTGACTTGCCACAACAACGACGACGGCTGCAAGTA
ACAACGGCTTGCATTCCAAGACCGCCACAACCTTGGTCTTGACTGCTGCT
GAGCACCCGTCCCCCGCGCCGTTCAATAATTGCAGGCTGAGGGTAACGCC
TCCGGGGAGATGACGGAGCTCTCGCGGCTGGAGATTCGGGTCGGCCGGTG
CCTCGAAGCAACGAAACATCCGGACGCCGACTCTCTGTACGTCGAGAACG
TAGATTTCGGCGAGGGAGAGCCAAGGTGAGCGTGCACGCACGCACGCGTG
CCTTCACCCCTCGAAAGAGCCACATACCTGCGTATCACAGGAGGAGGTCC
ACCCCCCCCCCCCTCCTGTGTGACCCCGGTTGGGTCGTCTAGCTAGTCGT
AGTGGGAGTATGGGGGCCAGTGGGGCAAACGACGAATATGCCAATAATGG
GGGGAAAAGAAAAAAAAACACGTGTTTGGAATGCCGTACAATAATAGATG
GTTCGGTATGAGTCCCGCCTACCGTAGGTGGCGCAAGCTACCACACCCCC
TGGACAGACTTTCAAAGCTCGATTCCTTCTCAGCAAGAAGAGTGCCAGTG
CCGGAGGGGGTGGCGTTGGAGAGATCAAGTCGAGGGCTGTCCGAACATGT
GTTGCTTGGTGCTGGCACCTTCTTCGTTACGGAGTAATGGAGCTCTAAAG
TCTGGTCCGGGGGGTGTAGTATCTTGTGTCACCTACGGTACGTGGGTGGC
GCGTCCTGTTTGTTGTTGGCTTTTCTTTTCTCCCAGGCGAGATACAGAGG
GTGTTAGGAAGGTCGGTCTTCACAGCAAGCCTACATGCGATGCGATGTGA
CGTGAGACTTACTTCGTACAGAATGTGGGATGAAAATGCTAGCGCACCCG
CCAAACCCCGTGGGTGTTGTATTTGTCAGCTTGATCAACAGAGCAATCCC
GATTCCAATTACGAATCGGGCACGTCTCAACGATGCAGATGCGTTGGGAT
TGATCGGAAAGCTAGTTGGAATCGAACCGTGGTGTTTTGTGGTGCGATGC
GTCAGAACGATCGTGTCCGGGCTGGTCGCGTACGTGCCGGAGGAAGAGAT
GCGAGGCAGGATGGTCTTGGGGCTGTGCAACCTCCCGGAGAGGGCGATGC
GCGGGGTGACGTCGGCCGGGATGCTGCTGTGCGCCAGCAACGACGACCAC
ACCATGTGAGAACCACGCGCCGACACCACCGACCACTCCTGCTGTTTCCA
CTATTGAAAAAGAGTAGGTCACAAAAGAGAGGGGAGCAGCCGGAGGAAAG
GAGGAAAAGGGACAGACACAGAGAGAGGCAGACCGACAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGGGGGGGGGGGGGGGGGGGAGAGGGAGGGAAACG
AGGCCCGAGGGCGCGCGCGCCCAGGGGGAGGTGTGTTTTCGTGCGNNNNN
NNNNNAGAAAAGAGAAAAAAAAAAAGCGAAAAAGAAGGAAAAGAAGAGGG
GGGGAGGGGGGGGAGGGGGGGGGGGGGAGAGAGAGAGAGAGGTCAAAGAG
CACCGAGGGCACAGCATCACAAGGTTATGTTTGTCTTCCTTCGCGCGCAC
CAGAAGAGCGCGCCATGTTCTCGCTTGCTAGCGGCTCCTGCCGTGTGGAC
TCAATCTACCCCCGCCGCCTGCCGCCGCTGCCCCCGCCGTCGCGTGCTTC
CATTACCCCCCCAATCCCCCCCCGCCCCGCCCCGCCCCGCCCCGCGAAAA
TAGCGTGGACCCCTTGTCGCCTCCAGAAGGGGCCAAAGTCGGAGAGCTCG
TGACATTCGAAGGCGTTCTTTCGGCCCCGGCTCCTCCCGGCGGCGCGGCC
TCGCGGGCGTGGTCGGCCACGATGGAAGGCATGAAGACCACTGGTACGAG
GTCGGTCCCGTCGGCGGTGCCCCCCGAGGGGGACGACGGTGGCGGTGGCG
GTGTTGCCGGCTGGAACGGCCGACCCATGCAGACGTCCGCGGGACCGTGC
ACCTCGACGGTTGTCGCCGGGCGAGTTCGTTAGGGTTAGGGTCGGGCTCT
TTGTAGAGATCGCGTACACCGCAACCAACCCCCGCTTGCTGTGGAGCAGT
GCTGTGTCCTGATGGCGATGGCGGCACACTACATATGTAGCGTGGCGTCT
TTTGTGGCGGGGCCACCGGTCAGTGCCGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig92:7718..12898-

>mRNA_L-elsbetiae_contig92.18218.1 ID=mRNA_L-elsbetiae_contig92.18218.1|Name=mRNA_L-elsbetiae_contig92.18218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig92:7718..12898- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGAGCTCTCGCGGCTGGAGATTCGGGTCGGCCGGTGCCTCGAAGC
AACGAAACATCCGGACGCCGACTCTCTGTACGTCGAGAACGTAGATTTCG
GCGAGGGAGAGCCAAGATGACGGAGCTCTCGCGGCTGGAGATTCGGGTCG
GCCGGTGCCTCGAAGCAACGAAACATCCGGACGCCGACTCTCTGTACGTC
GAGAACGTAGATTTCGGCGAGGGAGAGCCAAGAACGATCGTGTCCGGGCT
GGTCGCGTACGTGCCGGAGGAAGAGATGCGAGGCAGGATGGTCTTGGGGC
TGTGCAACCTCCCGGAGAGGGCGATGCGCGGGGTGACGTCGGCCGGGATG
CTGCTGTGCGCCAGCAACGACGACCACACCATAACGATCGTGTCCGGGCT
GGTCGCGTACGTGCCGGAGGAAGAGATGCGAGGCAGGATGGTCTTGGGGC
TGTGCAACCTCCCGGAGAGGGCGATGCGCGGGGTGACGTCGGCCGGGATG
CTGCTGTGCGCCAGCAACGACGACCACACCATCGTGGACCCCTTGTCGCC
TCCAGAAGGGGCCAAAGTCGGAGAGCTCGTGACATTCGAAGGCGTTCTTT
CGGCCCCGGCTCCTCCCGGCGGCGCGGCCTCGCGGGCGTGGTCGGCCACG
ATGGAAGGCATGAAGACCACTGGTACGAGGTCGGTCCCGTCGGCGGTGCC
CCCCGAGGGGGACGACGGTGGCGGTGGCGGTGTTGCCGGCTGGAACGGCC
GACCCATGCAGACGTCCGCGGGACCGTGCACCTCGACGGTTGTCGCCGGG
CGAGTTCGTTAGCGTGGACCCCTTGTCGCCTCCAGAAGGGGCCAAAGTCG
GAGAGCTCGTGACATTCGAAGGCGTTCTTTCGGCCCCGGCTCCTCCCGGC
GGCGCGGCCTCGCGGGCGTGGTCGGCCACGATGGAAGGCATGAAGACCAC
TGGTACGAGGTCGGTCCCGTCGGCGGTGCCCCCCGAGGGGGACGACGGTG
GCGGTGGCGGTGTTGCCGGCTGGAACGGCCGACCCATGCAGACGTCCGCG
GGACCGTGCACCTCGACGGTTGTCGCCGGGCGAGTTCGTTAG
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