mRNA_L-elsbetiae_contig9192.18212.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9192.18212.1
Unique NamemRNA_L-elsbetiae_contig9192.18212.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9192.18212.1 vs. uniprot
Match: A0A6H5JYJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ7_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 3.390e-60
Identity = 87/122 (71.31%), Postives = 103/122 (84.43%), Query Frame = 1
Query:    1 QPFPTMYWLSCPSLKAAVSQLENQGLISEWERRLQADTALLTEQQAAHKLYSEERWALLVPEDVEVIRKRGWKASYVGGVGGIVNPYNIKCMHCHFAHYLATGSNVVGRWTQEALDARMHLP 366
            QPFPTMYWLSCPSLKAAVSQLENQGLI EWERRLQAD  ++ + +AAHK Y+EERW+LL  EDV+ I+++GW+ S+  GV GIV P +IKC+H HFAH+LATG NVVG+WTQEALDA  HLP
Sbjct:   80 QPFPTMYWLSCPSLKAAVSQLENQGLILEWERRLQADPGIMADMEAAHKSYAEERWSLLSAEDVDTIKRQGWEKSFSNGVAGIVQPRHIKCLHTHFAHFLATGRNVVGKWTQEALDAGKHLP 201          
BLAST of mRNA_L-elsbetiae_contig9192.18212.1 vs. uniprot
Match: A0A6G0NZP4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6G0NZP4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 9.370e-32
Identity = 55/118 (46.61%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 QPFPTMYWLSCPSLKAAVSQLENQGLISEWERRLQADTALLTEQQAAHKLYSEERWALLVPEDVEVIRKRGWKASYVG-GVGGIVNPYNIKCMHCHFAHYLATGSNVVGRWTQEALDA 351
            +PFPT+YWLS   LKA VS LE+Q L+   +RRL AD     + + +H+ Y+E+RW ++ P D+E+++ R W+      G+ GI    N+KC+H H+AHYLATG+N+VG W QE LD+
Sbjct:   90 EPFPTIYWLSSTELKARVSALEDQQLVLALQRRLDADDPAKQKMKQSHREYAEQRWLMMTPRDLELVKGRRWEFFLRDVGIAGIREYTNVKCLHTHYAHYLATGNNLVGEWVQELLDS 207          
BLAST of mRNA_L-elsbetiae_contig9192.18212.1 vs. uniprot
Match: A0A3R7HVX3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HVX3_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.750e-31
Identity = 54/118 (45.76%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 QPFPTMYWLSCPSLKAAVSQLENQGLISEWERRLQADTALLTEQQAAHKLYSEERWALLVPEDVEVIRKRGWKASYVG-GVGGIVNPYNIKCMHCHFAHYLATGSNVVGRWTQEALDA 351
            +PFPT+YWL+   LKA VS LE++  + E +RRL+AD A   +    H+ Y+E+RW +L   D+ V++ RGW+      G+ GI +  N+KC+H H+AHYLATG+N++G W QE LD+
Sbjct:   86 EPFPTIYWLASTELKARVSTLEDEQYVMELQRRLEADEASKEKMAQNHREYAEQRWRMLTEHDLGVVKGRGWEFVLRDVGIAGIRDFTNVKCLHTHYAHYLATGNNLIGEWVQELLDS 203          
BLAST of mRNA_L-elsbetiae_contig9192.18212.1 vs. uniprot
Match: G4ZX89_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZX89_PHYSP)

HSP 1 Score: 114 bits (285), Expect = 2.960e-29
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    1 QPFPTMYWLSCPSLKAAVSQLENQGLISEWERRLQADTALLTEQQAAHKLYSEERWALLVPEDVEVIRKRGWKASYVG-GVGGIVNPYNIKCMHCHFAHYLATGSNVVGRWTQEALD 348
            +PFPT+YWL+   LKA VS LE+Q  +   + RL AD A     + +H+ Y+E+RW ++   D+E+++ R W+      G+ GI    N+KC+H H+AHYLATG+N+VG W QE LD
Sbjct:   85 EPFPTIYWLASTELKARVSALEDQQFVLTLQHRLDADEAAKQRMKESHREYAEQRWRMMTAHDLELVKGRRWEFFLRDVGIAGIREYTNVKCLHTHYAHYLATGNNLVGEWVQELLD 201          
BLAST of mRNA_L-elsbetiae_contig9192.18212.1 vs. uniprot
Match: D0NKV2_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NKV2_PHYIT)

HSP 1 Score: 113 bits (283), Expect = 4.470e-29
Identity = 51/117 (43.59%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    1 QPFPTMYWLSCPSLKAAVSQLENQGLISEWERRLQADTALLTEQQAAHKLYSEERWALLVPEDVEVIRKRGWKASYVG-GVGGIVNPYNIKCMHCHFAHYLATGSNVVGRWTQEALD 348
            +PFPT+YWL+   LKA VS LE+Q  +   + RL  D A       +H+ Y+E+RW ++ P D+E+++ R W+      G+ GI +  N+KC+H H+AHYLATG+N +G W QE LD
Sbjct:   81 EPFPTIYWLASAELKARVSTLEDQQFVLSLQHRLDTDQAAKERMAQSHREYAEQRWNMMTPHDLELVKGRRWEFVLRDVGIAGIRDFTNVKCLHTHYAHYLATGNNQIGEWVQELLD 197          
BLAST of mRNA_L-elsbetiae_contig9192.18212.1 vs. uniprot
Match: H3HCG6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCG6_PHYRM)

HSP 1 Score: 113 bits (282), Expect = 4.630e-29
Identity = 52/118 (44.07%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 QPFPTMYWLSCPSLKAAVSQLENQGLISEWERRLQADTALLTEQQAAHKLYSEERWALLVPEDVEVIRKRGWKASYVG-GVGGIVNPYNIKCMHCHFAHYLATGSNVVGRWTQEALDA 351
            +PFPT+YWL+   LKA VS LE+Q  +   + RL AD A   +   +H+ Y+E+RW ++ P D E+++ R W+      G+ GI    N+KC+H H+AHYLATG+N+VG W QE L++
Sbjct:   62 EPFPTIYWLASTELKARVSTLEDQQYVLTLQHRLDADEAAKEKMAQSHREYAEQRWRMMTPHDRELVKGRRWEFFLRDVGIAGIREFTNVKCLHTHYAHYLATGNNLVGEWVQELLNS 179          
BLAST of mRNA_L-elsbetiae_contig9192.18212.1 vs. uniprot
Match: A0A225VD34_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VD34_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.930e-28
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 1
Query:    1 QPFPTMYWLSCPSLKAAVSQLENQGLISEWERRLQADTALLTEQQAAHKLYSEERWALLVPEDVEVIRKRGWKASYVG-GVGGIVNPYNIKCMHCHFAHYLATGSNVVGRWTQEALDAR 354
            +PFPT+YWL+   LKA VS LE+Q  +   + RL  D A   +   +H+ Y+E+RW ++ P D+E++  R W+      G+ GI +  ++KC+H H+AHYLATG+N +G W QE LD++
Sbjct:   80 EPFPTIYWLASTELKARVSTLEDQQYVLTLQHRLDTDEAAKEKMAQSHREYAEQRWKMMTPHDLELVEGRRWEFVLRDVGIAGIRDFTSVKCLHTHYAHYLATGNNQIGEWVQELLDSK 198          
BLAST of mRNA_L-elsbetiae_contig9192.18212.1 vs. uniprot
Match: M4BYE9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYE9_HYAAE)

HSP 1 Score: 111 bits (277), Expect = 3.480e-28
Identity = 50/117 (42.74%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    1 QPFPTMYWLSCPSLKAAVSQLENQGLISEWERRLQADTALLTEQQAAHKLYSEERWALLVPEDVEVIRKRGWKASYVG-GVGGIVNPYNIKCMHCHFAHYLATGSNVVGRWTQEALD 348
            +PFPT+YWLS P LKA VS LE+Q  +   + RL  +     +    H+ Y+ ERW ++ P+DV +++ R W+      G+ GI +  N+KC+H H+AHYLATG N++G W QE L+
Sbjct:   76 EPFPTIYWLSSPELKARVSALEDQQFVLTLQHRLDTNEGAKEKMAQCHREYAAERWNMMTPDDVALVKGRRWEFVLRDVGIAGIRDFTNVKCLHTHYAHYLATGKNLIGEWVQELLN 192          
BLAST of mRNA_L-elsbetiae_contig9192.18212.1 vs. uniprot
Match: A0A1W0AC20_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AC20_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.150e-28
Identity = 56/126 (44.44%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 QPFPTMYWLSCPSLKAAVSQLENQGLISEWERRLQADTALLTEQQAAHKLYSEERWALLVPEDVEVIRKRGWKASYVG-GVGGIVNPYNIKCMHCHFAHYLATGSNVVGRWTQEALDARMHLPADA 375
            +PFPT YWL+   LK  VS LE  G +  +  RL A+     E + AH+ Y++ RW+LL P D++VI+ + W+ +    G+ GI N  ++KC+H H+AHYLAT SN+VG+W  EAL   M L A A
Sbjct:   96 EPFPTTYWLASTELKEKVSILEGMGFVEIFTDRLVANPQYAKEMEDAHQSYADFRWSLLTPRDIQVIKAKQWEHAIKDVGIAGIRNRASVKCLHTHYAHYLATKSNLVGKWVHEAL---MDLKATA 218          
BLAST of mRNA_L-elsbetiae_contig9192.18212.1 vs. uniprot
Match: W2QG84_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2QG84_PHYPN)

HSP 1 Score: 110 bits (275), Expect = 7.130e-28
Identity = 50/118 (42.37%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 QPFPTMYWLSCPSLKAAVSQLENQGLISEWERRLQADTALLTEQQAAHKLYSEERWALLVPEDVEVIRKRGWKASYVG-GVGGIVNPYNIKCMHCHFAHYLATGSNVVGRWTQEALDA 351
            +PFPT+YWL+   LKA VS LE+Q  +   + RL  D A   +   +H+ Y+E+RW ++   D+E+++ R W+      G+ GI +  N+KC+H H+AHYLATG+N +G W QE LD+
Sbjct:   81 EPFPTIYWLASTELKARVSTLEDQQYVLSLQHRLDTDEAAKEKMAQSHREYAEQRWNMMTAHDLELVKGRCWEFVLRDVGIAGIRDFTNVKCLHTHYAHYLATGNNQIGEWVQELLDS 198          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9192.18212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYJ7_9PHAE3.390e-6071.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0NZP4_9STRA9.370e-3246.61Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A3R7HVX3_9STRA6.750e-3145.76Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
G4ZX89_PHYSP2.960e-2944.44Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
D0NKV2_PHYIT4.470e-2943.59Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
H3HCG6_PHYRM4.630e-2944.07Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A225VD34_9STRA1.930e-2842.02Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
M4BYE9_HYAAE3.480e-2842.74Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A1W0AC20_9STRA4.150e-2844.44Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
W2QG84_PHYPN7.130e-2842.37Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9192contigL-elsbetiae_contig9192:660..1270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue6e-21
Seed eggNOG ortholog67593.Physo155412
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF501)
EggNOG OGs2S2X1@2759,3Q9XN@4776,COG1507@1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionProtein of unknown function DUF501
Ec32 orthologEc-07_006680.1
Exons2
Model size381
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9192.18212.1prot_L-elsbetiae_contig9192.18212.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9192 675..1270 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816992.4139614-UTR-L-elsbetiae_contig9192:659..6741622816992.4139614-UTR-L-elsbetiae_contig9192:659..674Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9192 660..674 +
1691683967.126167-UTR-L-elsbetiae_contig9192:659..6741691683967.126167-UTR-L-elsbetiae_contig9192:659..674Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9192 660..674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816992.4275749-CDS-L-elsbetiae_contig9192:674..7641622816992.4275749-CDS-L-elsbetiae_contig9192:674..764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9192 675..764 +
1691683967.137876-CDS-L-elsbetiae_contig9192:674..7641691683967.137876-CDS-L-elsbetiae_contig9192:674..764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9192 675..764 +
1622816992.4381404-CDS-L-elsbetiae_contig9192:994..12701622816992.4381404-CDS-L-elsbetiae_contig9192:994..1270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9192 995..1270 +
1691683967.1476672-CDS-L-elsbetiae_contig9192:994..12701691683967.1476672-CDS-L-elsbetiae_contig9192:994..1270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9192 995..1270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9192.18212.1

>prot_L-elsbetiae_contig9192.18212.1 ID=prot_L-elsbetiae_contig9192.18212.1|Name=mRNA_L-elsbetiae_contig9192.18212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MYWLSCPSLKAAVSQLENQGLISEWERRLQADTALLTEQQAAHKLYSEER
WALLVPEDVEVIRKRGWKASYVGGVGGIVNPYNIKCMHCHFAHYLATGSN
VVGRWTQEALDARMHLPADAT*
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mRNA from alignment at L-elsbetiae_contig9192:660..1270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9192.18212.1 ID=mRNA_L-elsbetiae_contig9192.18212.1|Name=mRNA_L-elsbetiae_contig9192.18212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=611bp|location=Sequence derived from alignment at L-elsbetiae_contig9192:660..1270+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCCTTTTCCAACAATGTACTGGCTATCGTGTCCATCCCTGAAGGCTGC CGTCTCCCAACTAGAGAACCAAGGACTGATCTCCGAGTGGGAACGCAGGC TGCAGGTGAGATCGCCGCATACCTTCGAGTAACCATGTGGTGGGTACACC TGTGTCTGTACAGATGCACCTGCAGGCATATCAAACCCCACTCTTCGCGC AGCAGTATTGATGTTGAAAAATGTAGACAGATTAGGTTGTTTGTAAGGGA GGCTGACCTCCACCACTTCCACGTAAATAGAGAAATACTCCATTCTGAAC TATTTACTCCGGTTTTCTTGCGCACATTTTTTCAGGCTGATACAGCACTT CTAACTGAGCAGCAAGCCGCCCACAAGCTGTATTCCGAGGAACGCTGGGC GTTGCTTGTACCAGAAGACGTGGAGGTTATCCGCAAACGAGGGTGGAAGG CTTCATATGTTGGAGGGGTGGGAGGCATAGTCAACCCTTACAACATCAAA TGCATGCACTGCCACTTCGCGCACTACCTCGCCACTGGAAGCAACGTAGT CGGGAGATGGACACAAGAAGCTTTGGACGCTAGAATGCATCTACCGGCGG ATGCGACATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9192:660..1270+

>mRNA_L-elsbetiae_contig9192.18212.1 ID=mRNA_L-elsbetiae_contig9192.18212.1|Name=mRNA_L-elsbetiae_contig9192.18212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig9192:660..1270+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTGGCTATCGTGTCCATCCCTGAAGGCTGCCGTCTCCCAACTAGA
GAACCAAGGACTGATCTCCGAGTGGGAACGCAGGCTGCAGATGTACTGGC
TATCGTGTCCATCCCTGAAGGCTGCCGTCTCCCAACTAGAGAACCAAGGA
CTGATCTCCGAGTGGGAACGCAGGCTGCAGGCTGATACAGCACTTCTAAC
TGAGCAGCAAGCCGCCCACAAGCTGTATTCCGAGGAACGCTGGGCGTTGC
TTGTACCAGAAGACGTGGAGGTTATCCGCAAACGAGGGTGGAAGGCTTCA
TATGTTGGAGGGGTGGGAGGCATAGTCAACCCTTACAACATCAAATGCAT
GCACTGCCACTTCGCGCACTACCTCGCCACTGGAAGCAACGTAGTCGGGA
GATGGACACAAGAAGCTTTGGACGCTAGAATGCATCTACCGGCGGATGCG
ACATGAGCTGATACAGCACTTCTAACTGAGCAGCAAGCCGCCCACAAGCT
GTATTCCGAGGAACGCTGGGCGTTGCTTGTACCAGAAGACGTGGAGGTTA
TCCGCAAACGAGGGTGGAAGGCTTCATATGTTGGAGGGGTGGGAGGCATA
GTCAACCCTTACAACATCAAATGCATGCACTGCCACTTCGCGCACTACCT
CGCCACTGGAAGCAACGTAGTCGGGAGATGGACACAAGAAGCTTTGGACG
CTAGAATGCATCTACCGGCGGATGCGACATGA
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