prot_L-elsbetiae_contig9119.18148.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9119.18148.1
Unique Nameprot_L-elsbetiae_contig9119.18148.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length206
Homology
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BLAST of mRNA_L-elsbetiae_contig9119.18148.1 vs. uniprot
Match: A0A6H5KU28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU28_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.490e-6
Identity = 100/123 (81.30%), Postives = 105/123 (85.37%), Query Frame = 0 
Query:    1 GLSELSALENLEAASLRHCRGLGAEATLCLSNSVKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAXLAALGLAAGRLRRLNLGWCTGL 123
            GLS+L AL++LE+ASLR C GLGAEATLCLSNS  L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       LA L  AAG L+RLNLGWC GL
Sbjct:  241 GLSDLPALKSLESASLRRCSGLGAEATLCLSNSPGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLTVDGLAGLEQAAGGLKRLNLGWCAGL 363
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BLAST of mRNA_L-elsbetiae_contig9119.18148.1 vs. uniprot
Match: D7FS92_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS92_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.570e-5
Identity = 99/123 (80.49%), Postives = 104/123 (84.55%), Query Frame = 0 
Query:    1 GLSELSALENLEAASLRHCRGLGAEATLCLSNSVKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAXLAALGLAAGRLRRLNLGWCTGL 123
            GLS+L AL++LE+ASLR C GLG EATLCLSNS  L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       LA L  AAG L+RLNLGWC GL
Sbjct:   97 GLSDLPALKSLESASLRRCSGLGTEATLCLSNSPGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLTVDGLAGLEQAAGGLKRLNLGWCAGL 219
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9119.18148.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU28_9PHAE4.490e-681.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS92_ECTSI1.570e-580.49Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 109..134
e-value: 230.0
score: 3.9
coord: 84..108
e-value: 150.0
score: 5.5
coord: 33..58
e-value: 1.2
score: 18.1
coord: 59..83
e-value: 12.0
score: 13.8
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 59..77
e-value: 0.15
score: 12.2
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 35..47
e-value: 1.9
score: 9.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..133
e-value: 7.4E-22
score: 79.7
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 6..128
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 6..128
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 4..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9119contigL-elsbetiae_contig9119:445..4664 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9119.18148.1mRNA_L-elsbetiae_contig9119.18148.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9119 445..4664 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9119.18148.1 ID=prot_L-elsbetiae_contig9119.18148.1|Name=mRNA_L-elsbetiae_contig9119.18148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
GLSELSALENLEAASLRHCRGLGAEATLCLSNSVKLEKLNLAHCPLLDDA
AVGNLAGLSKLRFLDLEGCENVTDEGLRLACRLPSLTCLNASRCHGITAA
GLAALGLAAGRLRRLNLGWCTGLGCAAAATAAAAATADGDGGRVGGGGSV
GGSDGMEEEEEEEGRRGEEMDGGDEGVGGDGGTRRRRRREWALPLLPKLE
RLCLAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf