mRNA_L-elsbetiae_contig9119.18148.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9119.18148.1
Unique NamemRNA_L-elsbetiae_contig9119.18148.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9119.18148.1 vs. uniprot
Match: A0A6H5KU28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU28_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.490e-6
Identity = 100/123 (81.30%), Postives = 105/123 (85.37%), Query Frame = 1 
Query:    1 GLSELSALENLEAASLRHCRGLGAEATLCLSNSVKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAXLAALGLAAGRLRRLNLGWCTGL 369
            GLS+L AL++LE+ASLR C GLGAEATLCLSNS  L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       LA L  AAG L+RLNLGWC GL
Sbjct:  241 GLSDLPALKSLESASLRRCSGLGAEATLCLSNSPGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLTVDGLAGLEQAAGGLKRLNLGWCAGL 363
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BLAST of mRNA_L-elsbetiae_contig9119.18148.1 vs. uniprot
Match: D7FS92_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS92_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.570e-5
Identity = 99/123 (80.49%), Postives = 104/123 (84.55%), Query Frame = 1 
Query:    1 GLSELSALENLEAASLRHCRGLGAEATLCLSNSVKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAXLAALGLAAGRLRRLNLGWCTGL 369
            GLS+L AL++LE+ASLR C GLG EATLCLSNS  L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       LA L  AAG L+RLNLGWC GL
Sbjct:   97 GLSDLPALKSLESASLRRCSGLGTEATLCLSNSPGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLTVDGLAGLEQAAGGLKRLNLGWCAGL 219
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9119.18148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU28_9PHAE4.490e-681.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS92_ECTSI1.570e-580.49Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9119contigL-elsbetiae_contig9119:445..4664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size618
Cds size618
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816986.892743-CDS-L-elsbetiae_contig9119:444..6541622816986.892743-CDS-L-elsbetiae_contig9119:444..654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9119 445..654 +
1691683963.006963-CDS-L-elsbetiae_contig9119:444..6541691683963.006963-CDS-L-elsbetiae_contig9119:444..654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9119 445..654 +
1622816986.9035943-CDS-L-elsbetiae_contig9119:4256..46641622816986.9035943-CDS-L-elsbetiae_contig9119:4256..4664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9119 4257..4664 +
1691683963.018665-CDS-L-elsbetiae_contig9119:4256..46641691683963.018665-CDS-L-elsbetiae_contig9119:4256..4664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9119 4257..4664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9119.18148.1prot_L-elsbetiae_contig9119.18148.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9119 445..4664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9119.18148.1

>prot_L-elsbetiae_contig9119.18148.1 ID=prot_L-elsbetiae_contig9119.18148.1|Name=mRNA_L-elsbetiae_contig9119.18148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
GLSELSALENLEAASLRHCRGLGAEATLCLSNSVKLEKLNLAHCPLLDDA
AVGNLAGLSKLRFLDLEGCENVTDEGLRLACRLPSLTCLNASRCHGITAA
GLAALGLAAGRLRRLNLGWCTGLGCAAAATAAAAATADGDGGRVGGGGSV
GGSDGMEEEEEEEGRRGEEMDGGDEGVGGDGGTRRRRRREWALPLLPKLE
RLCLAR
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mRNA from alignment at L-elsbetiae_contig9119:445..4664+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9119.18148.1 ID=mRNA_L-elsbetiae_contig9119.18148.1|Name=mRNA_L-elsbetiae_contig9119.18148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4220bp|location=Sequence derived from alignment at L-elsbetiae_contig9119:445..4664+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCTTTCCGAGCTCTCCGCTCTCGAGAACCTAGAGGCCGCCAGCCTGAG
GCACTGCCGCGGACTCGGCGCCGAGGCGACGCTGTGCCTGTCCAACTCCG
TCAAGCTGGAGAAGCTCAACCTGGCGCACTGCCCCCTGCTGGACGACGCC
GCCGTAGGAAACCTGGCGGGACTGTCAAAGCTGAGATTCTTGGACCTCGA
AGGCTGCGAGGTGGGGTGTCCGTGCGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTTGTGTTTTATGTTTGTGTGTGTGTGTG
TTTTTTTTTGTAAGGATCCTATATACCTTCCCACGTGCTTGCTAAATATA
TTAAATATATAGATACATCGGTCCGGGAAAACTTCTGTTCCGATATGTCA
TCAGTAGGCTGTCGGTAGGCTGTCGGCCTCCAATGGCCCAAACGAACGTC
AGGATGAGAGCAGCTGTCTCTTTAAGTTGAAGAAAAACACGTCAGTATTG
TAGCAGCTGGGTCTCAAAAAACACACCTGAGGGGTACAGACCTGCACAGC
TATGTTGACTTGCACAGCTGTGTTGACAAAGTGGGAGCGTGTTGATCAAC
GGCGGAGCGCCCACAGAGAAGCACCCGGTTAGTGCTGTTGCTGTGCTTAG
GGGGGCAGCTGTTTCGTCTAATCTATGGCCCTGCTTTTTGCGGGAAAACA
GGCGTTCGAGTTCAGAATCTTTGGTTCAAAGATCTGGGTTATTATTTTTT
CTTTCGTCTTGCATCACCCCCGTCCCCTGTGCTCTCATGAGCTCGCTCCG
AAGGGTGATCTTGTATATATATACCTAATACATATTTAGTTGGTTGGCCA
ATGAACAGGTGTCAGCTTTGAGCGGGGGCCAAAAACGAGTGAAACGCGGT
CCTATGAGAGAGACGGAACCCCTCGTTTGTGAGGGTTACGATGTGAATGT
ATGTGTGTGTGTCTGCGTCTACATTTCCTCGAAACAAGCCTTTTACTGTC
ATTTCTTCTCGCGTACCGTAGGTGTGGCATAAGATAAGACATCCCCTGGA
CCGATATTGAAAGCTTGGTTACTCCGCAACGAATACGATTCTAACCACAA
GCGCCACATTTTCGGACAGCTCTCGACGAAATCTTTCCAACGCCGCCCTT
TTCGGGGCTGACGCTCTGCTTGCTGTGTAGTACTTGAGCTTTGAAAATCG
GTCCAGGGGGTGTCTTATCTTACGTCACCTACGGTTATGTATATTTGCGT
ACCTCCGTATCTGTATTTTTTTACTTGGTACTTACCGATGCTCGGACGCG
GATCGGAGCTAACCTGGATAGTAACACAGTTGCTGCTGCTGCTGCTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTATTGTTGTCTTCACATTAAAAACC
GTTCCGATCTCTCCACCAAGTATGTACCGCTCCCCCTACAATGTCCGTAC
TAATCCTGACACTTGGTGGCGGCCGATTCCCGTGGTGACGGGCTGCACAA
CTTATAAATACCTAAAACAAGATCAACAAAAATACATTAGATCGAAGGGT
CAGCCAAGCGATAAAAAAAACAAACACAAATAATGTGAAGCCCCCCGCTC
CCCTCTACACGATATGCGGGGAGTGGTGGTATGTCGTCTACCAGTGCTCT
GTTTCTATCCCTGGGCACCCGCAGGTATAGTTACAGGGTACAAGAGCTCC
GGACGCGGGGGGCTACCGCCCCCCCCCCCGTCCTTCGGTTTGTGGTAGTT
AGGGAGGGTTCGACGACGTGTGGTGCAGTAGTTACCCGTGTTACCAAGGG
TAACAGGCCTGTCTGCAGCAGCTGTGGTCTGGAGCCGTTGTGCTTTTGAG
AAAGCGACTTCTACAGCAGTAGGAATACTCCGACGACCTTTTTTCAGCGC
GTGGTTCTTTGACGTGTGACGGGACTGTGAGAAGCGCGCGTGCGCCACCG
CGCGCGGCACAGCCGCTCGCTGCCTTAGGCTTTTACCCCTTCCCTCCGAC
CTAGCACCTGACTAACTAACCAACGACCCTTGCGATCTACAGCTCTCACC
AACGCCCCCCGATGAGTCAGGGTTTGCGGTTTGGGGTGAGGGTCAAAAAT
GAAAAAACAGCCAGCGTCCGGTATGCAGCTGAAAAAGGCCGGTACGCAAG
TGCTTGCTGACTCTTTAAAGACTGCGGAACTACTGTCAGCCACGAAAACA
GTTTTCAAGCCTAGGTCATCCTCACGCGCATGACCCGAACGCGTCTGGAA
TCTTATCCCGCGGCAACGGTTCATGTGTTGGAAAGACTTTTCTCGTTGAC
CTCGCGCAAGGGGAAGCCGAACGGTGCTGGCGCGTGGTCGCTGAAAGAGG
CAACGCTTAACGTAATCGATTTGAGCGGGGGGCGAGTTCCGCCGCTGCTC
GCACAGCGGTCGGGCTGAGAGAGCGCTGCGCTCTCAGTGACTCAGAACTG
AAGATCCATATCCCATCGTGATATTAATTGCCTCTATAATACAAGCTCCC
CCGTTATCTGGAGGTGTGTGTGTGTGCTCGCGCGCGTGCGCTATAAACAC
ACGTGTTCAAGTTTCGGAAGCATGGCGGGGTCCATCGAGCCGCCTCCGGG
GTCCCCGCACTCTGGCCTCGGTTGTGGGGGGCATGGGGGATCGTTGGCGC
TTGAACTGGCGTGACGCTGGGGACGCTTATGCGGGGGTGGAGGGACTACT
ACCACTGCTGCGTGGCGAGGCAGGACCTCGTTCTAGTGGACGGCATAGAT
ATCCAGGGACCTGTGCACTACTGTTTTTTTTTTGCTTTTTCACCCGGGTG
GTTTGGACTGTGTACATTCATACGGCTGCGGTACAGCAAGCAATGCATGG
CGCCGAAAGTACCCGCCGGGCTTGACATAGTTTTATTTTTTATTTTTTAT
TTTTATTTATCACATGTACTTCCAGTTTGATAGAAATCCGCCTACATGAA
TAGGCGGAAAAGGTGTCACTTATGGGCATATACCCCTAGTGGCTCCGCAG
GTGGGATTATGCCCCTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TTGGCCCCCTTTTTTTCCTTTCCCCCCCCCCCCCCCCCCCGCCAATTTTT
TGTCCCTGCAAAAAACTAATTAAAACTTCTACATAAAATACCCAAAACAC
GATACAATAGGCTTCCTGAAATAGAGCCAGCCCCCGATTCTCAAAAAGGG
CGGGGGGGGCGGCGCGCGCGCGGGGGGGGGGGGGGGGGGATTTATCTAGG
AAATAGAGGGAACAATGCCCCACAGCCACTTTTTCAGAATTGGGGGGCTG
TGCCCTGCAGCAGGAAGCCTATACATACATAGCCAGAAAATACACCTCCT
GTACTCTCCCCCCCCCCCCCCCTCCCCCGACACTCTACGACTGCCCCCGG
CTATCATGGGCGAAAAGATGAAAGCTCGCCCCGAGTTTTGGCGGTGTGCC
TGCTGGGGAGGGGCCCGAACAGAAGTGGCACCGCCGTTTCGAGATGCAGG
ACCTCCCTCCCGAGAGAGCAAAAGAGAGTGCTCTATCTTCATTTGTATGT
AGGGTTAGGACGCGAGTTCACGGCCGCCGACCGAATGCTGCCACCAAAAG
GCAGCCGGAATTCGACCAAGCTCGCCCAACCCTTCCATACCCCGTCCTTC
CCCTCCCCTCCCTGTCAACGCGTTTTTCTACGGGGCACAATCTCGCCCCC
CCCCCCCCCCCCCCATAATCCGTCACCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCAGAACGTCACCGACGAGGGCCTACGGCTGGCCTGCCGGCT
CCCGTCCCTGACGTGCCTCAACGCGTCCCGGTGCCACGGCATCACGGCGG
CCGGTCTCGCCGCCCTCGGGCTGGCGGCGGGCCGCCTGCGGCGGCTCAAC
CTCGGCTGGTGCACGGGCCTCGGCTGCGCCGCCGCCGCCACCGCCGCCGC
GGCCGCCACCGCCGACGGCGACGGAGGGCGCGTGGGAGGCGGCGGGAGTG
TTGGTGGTTCCGATGGCATGGAGGAGGAGGAGGAGGAGGAGGGGAGACGT
GGCGAGGAGATGGATGGCGGGGATGAAGGGGTGGGGGGGGACGGGGGGAC
CAGGAGGAGGAGGAGGAGGGAGTGGGCGCTGCCGTTGCTGCCCAAGCTCG
AGCGGTTGTGCCTCGCGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9119:445..4664+

>mRNA_L-elsbetiae_contig9119.18148.1 ID=mRNA_L-elsbetiae_contig9119.18148.1|Name=mRNA_L-elsbetiae_contig9119.18148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig9119:445..4664+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCTTTCCGAGCTCTCCGCTCTCGAGAACCTAGAGGCCGCCAGCCTGAG
GCACTGCCGCGGACTCGGCGCCGAGGCGACGCTGTGCCTGTCCAACTCCG
TCAAGCTGGAGAAGCTCAACCTGGCGCACTGCCCCCTGCTGGACGACGCC
GCCGTAGGAAACCTGGCGGGACTGTCAAAGCTGAGATTCTTGGACCTCGA
AGGCTGCGAGGGGCTTTCCGAGCTCTCCGCTCTCGAGAACCTAGAGGCCG
CCAGCCTGAGGCACTGCCGCGGACTCGGCGCCGAGGCGACGCTGTGCCTG
TCCAACTCCGTCAAGCTGGAGAAGCTCAACCTGGCGCACTGCCCCCTGCT
GGACGACGCCGCCGTAGGAAACCTGGCGGGACTGTCAAAGCTGAGATTCT
TGGACCTCGAAGGCTGCGAGAACGTCACCGACGAGGGCCTACGGCTGGCC
TGCCGGCTCCCGTCCCTGACGTGCCTCAACGCGTCCCGGTGCCACGGCAT
CACGGCGGCCGGTCTCGCCGCCCTCGGGCTGGCGGCGGGCCGCCTGCGGC
GGCTCAACCTCGGCTGGTGCACGGGCCTCGGCTGCGCCGCCGCCGCCACC
GCCGCCGCGGCCGCCACCGCCGACGGCGACGGAGGGCGCGTGGGAGGCGG
CGGGAGTGTTGGTGGTTCCGATGGCATGGAGGAGGAGGAGGAGGAGGAGG
GGAGACGTGGCGAGGAGATGGATGGCGGGGATGAAGGGGTGGGGGGGGAC
GGGGGGACCAGGAGGAGGAGGAGGAGGGAGTGGGCGCTGCCGTTGCTGCC
CAAGCTCGAGCGGTTGTGCCTCGCGAGGAACGTCACCGACGAGGGCCTAC
GGCTGGCCTGCCGGCTCCCGTCCCTGACGTGCCTCAACGCGTCCCGGTGC
CACGGCATCACGGCGGCCGGTCTCGCCGCCCTCGGGCTGGCGGCGGGCCG
CCTGCGGCGGCTCAACCTCGGCTGGTGCACGGGCCTCGGCTGCGCCGCCG
CCGCCACCGCCGCCGCGGCCGCCACCGCCGACGGCGACGGAGGGCGCGTG
GGAGGCGGCGGGAGTGTTGGTGGTTCCGATGGCATGGAGGAGGAGGAGGA
GGAGGAGGGGAGACGTGGCGAGGAGATGGATGGCGGGGATGAAGGGGTGG
GGGGGGACGGGGGGACCAGGAGGAGGAGGAGGAGGGAGTGGGCGCTGCCG
TTGCTGCCCAAGCTCGAGCGGTTGTGCCTCGCGAGG
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