mRNA_L-elsbetiae_contig888.17902.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig888.17902.1
Unique NamemRNA_L-elsbetiae_contig888.17902.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig888.17902.1 vs. uniprot
Match: A0A6H5KQX8_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX8_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.000e-45
Identity = 193/488 (39.55%), Postives = 217/488 (44.47%), Query Frame = 3 
Query:   96 RAKSTSPSPTPLGSFNSTIEVGTNGLQNREPRSSSQDRRSXXXXXXXXXXXXXXXXXXPLPPGADKIMEMGFSARKARAALERSGGDSGQAVEWLLSQPSSPG-DGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PVFDQTAFTPVLIPEKPGAIVLAS---SFTGGGGSVA---------------------AAVSPPGPAVRPVQ--------------------GASLIRPNSTPAVISALDPDAVDTFEPQAAPXXXXXXXQPRQQGQQQG---------------------SHPGSPVLPATATVG-YRRQSAPTGLSPASLNLGGVPGM-PPRGVPNQLQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXX---------------------------PSGRAAVGGSTARGXXXXXXXXXXXXXXXGGNVVRNST----TMVPAGGSSQAPVRVG-SAQGQQSNPQFLQG 1247
            RAKS SP P      N   E G NGL+ REPRSSSQDR                     LPPGADKIMEMGFSARKARAALERS GD  QAVEWLL+ PS+P  D G                                     PVFDQ AFTPVLIP KPGAIV+AS   ++T  GG+V                      A +S PGP  +                       G+ L RP STP++ISALDPD+VDTFEP  AP        PRQ  Q                        S  GSPV  A A  G +RR+SAP GLS  ++NLGG  GM PPRGVP+Q QQ                             P                             PSG AAVGGST+R XXXXXXXXXXXXXXXGG+VV   +    ++VPAG         G + Q QQ  PQF QG
Sbjct: 1248 RAKSMSPPPVSFSKLNDVTEAGKNGLEKREPRSSSQDRGGVARKKSSGS----------LPPGADKIMEMGFSARKARAALERSDGDVDQAVEWLLNHPSAPDEDSGDEEVGDDARPPSPSSASPPPGRKSLPPKKSKPLKPQNPVFDQQAFTPVLIPAKPGAIVVASGPNAWTPPGGAVGXXXXXXXXXXXXXXSTALTLVAPLSAPGPPPQXXXXXXXXXXXXXXXXXXQGGGGGSGLSRPRSTPSIISALDPDSVDTFEPHVAPL-------PRQASQSPXXXXXXXXXXXXXXXXXXXXXXSQLGSPVPAAAAASGVHRRKSAPMGLSLGNVNLGG--GMSPPRGVPSQQQQGAQQPQRSTSASPPSLGPILGSASSPQLRPQLHQQQXXHQPRPSDPSLGTNPGPARPPPPSGPAAVGGSTSRXXXXXXXXXXXXXXXXGGSVVGGGSNAGRSLVPAGXXXXXXXXXGPTQQHQQPRPQFQQG 1716
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BLAST of mRNA_L-elsbetiae_contig888.17902.1 vs. uniprot
Match: D7G6Y8_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y8_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 4.770e-42
Identity = 151/331 (45.62%), Postives = 165/331 (49.85%), Query Frame = 3 
Query:   93 SRAKSTSPSPTPLGSFNSTIEVGTNGLQNREPRSSSQDRRSXXXXXXXXXXXXXXXXXXPLPPGADKIMEMGFSARKARAALERSGGDSGQAVEWLLSQPSSPG-DGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PVFDQTAFTPVLIPEKPGAIVLAS---SFTGGGGS----------------------VAAAVSPPGPAVRPVQ--------------------GASLIRPNSTPAVISALDPDAVDTFEPQAAPXXXXXXXQPRQQGQQQ------------------GSHPGSPV-LPATATVGYRRQSAPTGLS 878
            SRAKS SP P      N   EVG NGL+ REPRSSSQDR                     LPPGADKIMEMGFSARKARAALERS GD  QAVEWLL+ PS+P  D G             XXXXXXXX    XXX         PVFDQ AFTPVLIP KPGAIV+AS   ++T  GG+                      + A +S PGP  +                       G+ L RP STP++ISALDPD+VDTFEPQ AP        PRQ  Q                     S  GSPV   ATA  GYRRQSAPTGLS
Sbjct: 1540 SRAKSMSPPPVSFSKLNDATEVGKNGLEKREPRSSSQDRGGVARKKSSGS----------LPPGADKIMEMGFSARKARAALERSDGDVDQAVEWLLTHPSAPDEDSGDEEPEDDALPPSPXXXXXXXXRKSLXXXKSKPLKPQNPVFDQQAFTPVLIPAKPGAIVVASGPNAWTSPGGAGXXXXXXXXXXXXXXXXSTALTLVAPLSAPGPPPQXXXXXXXXXXXXXXXXXXXXXGGGSGLSRPRSTPSIISALDPDSVDTFEPQVAPL-------PRQASQSPXXXXXXXXXXXXXXXXGPASQLGSPVPAAATAAGGYRRQSAPTGLS 1853
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig888.17902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQX8_9PHAE1.000e-4539.55UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G6Y8_ECTSI4.770e-4245.62UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig888contigL-elsbetiae_contig888:2334..4758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.1
Seed ortholog evalue4.2e-42
Seed eggNOG ortholog2880.D7G6Y8
KEGG koko:K05749
KEGG Pathwayko03013,ko04810,map03013,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005911,GO:0006928,GO:0008064,GO:0008150,GO:0009653,GO:0009987,GO:0010639,GO:0016043,GO:0030054,GO:0030175,GO:0030832,GO:0030834,GO:0030835,GO:0031143,GO:0031209,GO:0031252,GO:0032433,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0040011,GO:0042995,GO:0043242,GO:0043244,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051179,GO:0051493,GO:0051494,GO:0051674,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0098858,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901880,GO:1902903,GO:1902904
EggNOG free text desc.positive regulation of neurotrophin TRK receptor signaling pathway
EggNOG OGsKOG3534@1,KOG3534@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons2
Model size1274
Cds size1242
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig888.17902.1prot_L-elsbetiae_contig888.17902.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig888 2366..4758 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816965.0374756-UTR-L-elsbetiae_contig888:2333..23651622816965.0374756-UTR-L-elsbetiae_contig888:2333..2365Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig888 2334..2365 +
1691683946.6303506-UTR-L-elsbetiae_contig888:2333..23651691683946.6303506-UTR-L-elsbetiae_contig888:2333..2365Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig888 2334..2365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816965.0505502-CDS-L-elsbetiae_contig888:2365..29361622816965.0505502-CDS-L-elsbetiae_contig888:2365..2936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig888 2366..2936 +
1691683946.642438-CDS-L-elsbetiae_contig888:2365..29361691683946.642438-CDS-L-elsbetiae_contig888:2365..2936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig888 2366..2936 +
1622816965.0633705-CDS-L-elsbetiae_contig888:4087..47581622816965.0633705-CDS-L-elsbetiae_contig888:4087..4758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig888 4088..4758 +
1691683946.6542065-CDS-L-elsbetiae_contig888:4087..47581691683946.6542065-CDS-L-elsbetiae_contig888:4087..4758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig888 4088..4758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig888.17902.1

>prot_L-elsbetiae_contig888.17902.1 ID=prot_L-elsbetiae_contig888.17902.1|Name=mRNA_L-elsbetiae_contig888.17902.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=414bp
MPGSASGARPPNPGRPAGPPSRAKSTSPSPTPLGSFNSTIEVGTNGLQNR
EPRSSSQDRRSTSRETSGGGGGGGGGGGGPLPPGADKIMEMGFSARKARA
ALERSGGDSGQAVEWLLSQPSSPGDGGEDSDEDVRPPSPSTASPPARKSL
KKPKPQKPQNPVFDQTAFTPVLIPEKPGAIVLASSFTGGGGSVAAAVSPP
GPAVRPVQGASLIRPNSTPAVISALDPDAVDTFEPQAAPPPPQQSSQPRQ
QGQQQGSHPGSPVLPATATVGYRRQSAPTGLSPASLNLGGVPGMPPRGVP
NQLQQQQQQPSQQQQQQQPRPSNPGPGANPNPARPPPPSGRAAVGGSTAR
GPARTPVPSGRAAVGGGGNVVRNSTTMVPAGGSSQAPVRVGSAQGQQSNP
QFLQGSGQMQQPNL
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mRNA from alignment at L-elsbetiae_contig888:2334..4758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig888.17902.1 ID=mRNA_L-elsbetiae_contig888.17902.1|Name=mRNA_L-elsbetiae_contig888.17902.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2425bp|location=Sequence derived from alignment at L-elsbetiae_contig888:2334..4758+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGCCCCCCGCCGCCGTCGGGGCCGCCGGCGATGCCCGGCTCGGCGAGC
GGGGCGAGGCCCCCGAACCCGGGCAGGCCGGCGGGCCCGCCGTCGCGCGC
GAAGAGCACGTCGCCGTCTCCCACGCCGCTCGGCTCGTTCAACAGCACGA
TAGAGGTCGGCACGAACGGCCTCCAGAATCGGGAGCCGCGAAGCTCCTCT
CAAGACCGGAGGAGTACCTCGAGAGAGACCAGCGGCGGTGGCGGTGGCGG
CGGCGGCGGCGGCGGTGGCCCGCTGCCCCCGGGGGCGGATAAGATTATGG
AGATGGGGTTCTCGGCGAGGAAGGCGCGAGCCGCCCTGGAGCGATCGGGC
GGCGACTCGGGCCAGGCGGTGGAGTGGCTGCTGTCCCAGCCGTCCTCCCC
GGGGGACGGCGGGGAAGACTCTGACGAGGACGTGCGGCCGCCGTCCCCGT
CCACGGCGTCGCCCCCGGCGAGGAAGTCGCTGAAGAAGCCCAAGCCCCAA
AAGCCGCAGAACCCCGTGTTTGACCAGACGGCCTTCACTCCAGTGCTCAT
CCCCGAGAAGCCGGGGGCGATCGTTTTGGCGAGCAGCTTCACCGGCGGTG
GAGGTGAGGACCCGGAGTCTCGTGAAGTGAAACAAGTACGTAGCTTGCCG
AGAACCGTGCGTGCGGGCCTTATGTACGAGGGAAAGTGTTTTCATAGGTA
TGTAGCTCGTCACCTTTTTAATTAATGTGTACAAATATCAGCAGTCTACG
TCCAGTCTGTGAAGAAGTCGTTCCAGAGGGACTGTTGTAGGCGTACTAAC
CCCCTGTTTCCCATCCCAGATATATTCGCACAAAATCAGTATACATGAGG
TTACATTTATTAAAATCAGTAGTTCATTAAAAACCGTTAAAATGTATATA
TAATTATAAACCAGTAATCTCTATATATATCGATATATATATACATATAC
GTACACGTAGTGTAGTTCTTTGTTGGTGAAAAGTTCGTGTTATAGGGTAT
ACTGTAGTATACATAGTCTAGACGTGAGCATATCAAGTATGTTATGGTAC
AGGCAGTGTTATTATAGGTGGTGTAGGTGTTTTCTGGTCATCATTTGCCA
AGGGGTTGCAGCTTGGTGTCTGGGTTACAACAGCAGAGTAGCGACAACCT
CATTCTGTGGTCCGCTGCACAACAACACCTTTTTGTCGTTGTCATAAGTC
AAGTTCTACTTGGGCGCTTATCCCCGAGCTTTTTTGGCTCCCCGTAACCA
ACACCGGAGCTCAATCAATGTCTCCCTTTTCGTCCTTCCTCCCTGTCACC
CATGCTTTCTCCCGCTTGGTTTATTAATGCCCACACACACGCCCAAGCTT
CTTCCCACGGCTGAATGTCGCTTGTTTAATTCACACCATATTCGTCTCAA
AATTTCAACACGGACGTGTTGCCGTATATTTTAGGGCGCCCTTTAGCTCT
TGTTGCCCGACGTATATGGCATCCGTCACATGACTTTTTGGACAGTGCCC
GATCTTTGGGTTGATGACTAATTCGGTCGTGACCTAGAGACGCGGTCGGT
TGTTGCTTACACATAAGTAGAATTTTTGGTTTGCATGTTAACACGCCAGC
TCATTGGCTTGAACTGCCGCTTTTGGCTAGAACTATTGAGCGCATGCATT
CTTTTTTTGAGACCCGAAAACGTGTGTGTACTAAGGCGAGATCATACAGA
ATTCGTGTTTTGTCGTTCATTTGTTAACCCCCCCCACCCCCCTATTGTGA
GCAGGTTCTGTCGCCGCCGCCGTCTCGCCGCCAGGGCCAGCCGTGCGACC
GGTGCAAGGCGCGAGCCTCATCCGTCCGAATTCTACACCGGCTGTTATTT
CCGCGCTGGATCCAGATGCTGTCGATACGTTCGAGCCACAAGCAGCCCCT
CCGCCGCCGCAGCAAAGCTCTCAGCCTCGACAGCAAGGACAGCAGCAAGG
ATCTCACCCCGGAAGCCCGGTCCTGCCGGCGACGGCGACGGTGGGGTACC
GACGACAGTCGGCGCCGACAGGGCTGTCGCCTGCGAGTTTGAACCTCGGC
GGCGTGCCGGGCATGCCGCCGCGAGGCGTCCCCAACCAGCTGCAGCAGCA
GCAGCAGCAGCCGTCTCAGCAGCAGCAGCAGCAGCAGCCGCGACCAAGTA
ACCCGGGGCCCGGCGCTAACCCCAACCCCGCGCGACCACCGCCGCCGTCA
GGCCGGGCTGCCGTGGGCGGCAGCACCGCCAGGGGGCCCGCACGCACACC
CGTCCCCTCGGGTCGGGCAGCGGTAGGTGGCGGTGGCAACGTTGTTCGAA
ACAGCACCACCATGGTGCCTGCCGGGGGTTCCTCCCAGGCGCCTGTGCGT
GTCGGATCCGCGCAGGGGCAGCAGTCGAATCCACAGTTCTTACAGGGCTC
AGGACAGATGCAGCAGCCGAATCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig888:2334..4758+

>mRNA_L-elsbetiae_contig888.17902.1 ID=mRNA_L-elsbetiae_contig888.17902.1|Name=mRNA_L-elsbetiae_contig888.17902.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2484bp|location=Sequence derived from alignment at L-elsbetiae_contig888:2334..4758+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCGGCTCGGCGAGCGGGGCGAGGCCCCCGAACCCGGGCAGGCCGGC
GGGCCCGCCGTCGCGCGCGAAGAGCACGTCGCCGTCTCCCACGCCGCTCG
GCTCGTTCAACAGCACGATAGAGGTCGGCACGAACGGCCTCCAGAATCGG
GAGCCGCGAAGCTCCTCTCAAGACCGGAGGAGTACCTCGAGAGAGACCAG
CGGCGGTGGCGGTGGCGGCGGCGGCGGCGGCGGTGGCCCGCTGCCCCCGG
GGGCGGATAAGATTATGGAGATGGGGTTCTCGGCGAGGAAGGCGCGAGCC
GCCCTGGAGCGATCGGGCGGCGACTCGGGCCAGGCGGTGGAGTGGCTGCT
GTCCCAGCCGTCCTCCCCGGGGGACGGCGGGGAAGACTCTGACGAGGACG
TGCGGCCGCCGTCCCCGTCCACGGCGTCGCCCCCGGCGAGGAAGTCGCTG
AAGAAGCCCAAGCCCCAAAAGCCGCAGAACCCCGTGTTTGACCAGACGGC
CTTCACTCCAGTGCTCATCCCCGAGAAGCCGGGGGCGATCGTTTTGGCGA
GCAGCTTCACCGGCGGTGGAGATGCCCGGCTCGGCGAGCGGGGCGAGGCC
CCCGAACCCGGGCAGGCCGGCGGGCCCGCCGTCGCGCGCGAAGAGCACGT
CGCCGTCTCCCACGCCGCTCGGCTCGTTCAACAGCACGATAGAGGTCGGC
ACGAACGGCCTCCAGAATCGGGAGCCGCGAAGCTCCTCTCAAGACCGGAG
GAGTACCTCGAGAGAGACCAGCGGCGGTGGCGGTGGCGGCGGCGGCGGCG
GCGGTGGCCCGCTGCCCCCGGGGGCGGATAAGATTATGGAGATGGGGTTC
TCGGCGAGGAAGGCGCGAGCCGCCCTGGAGCGATCGGGCGGCGACTCGGG
CCAGGCGGTGGAGTGGCTGCTGTCCCAGCCGTCCTCCCCGGGGGACGGCG
GGGAAGACTCTGACGAGGACGTGCGGCCGCCGTCCCCGTCCACGGCGTCG
CCCCCGGCGAGGAAGTCGCTGAAGAAGCCCAAGCCCCAAAAGCCGCAGAA
CCCCGTGTTTGACCAGACGGCCTTCACTCCAGTGCTCATCCCCGAGAAGC
CGGGGGCGATCGTTTTGGCGAGCAGCTTCACCGGCGGTGGAGGTTCTGTC
GCCGCCGCCGTCTCGCCGCCAGGGCCAGCCGTGCGACCGGTGCAAGGCGC
GAGCCTCATCCGTCCGAATTCTACACCGGCTGTTATTTCCGCGCTGGATC
CAGATGCTGTCGATACGTTCGAGCCACAAGCAGCCCCTCCGCCGCCGCAG
CAAAGCTCTCAGCCTCGACAGCAAGGACAGCAGCAAGGATCTCACCCCGG
AAGCCCGGTCCTGCCGGCGACGGCGACGGTGGGGTACCGACGACAGTCGG
CGCCGACAGGGCTGTCGCCTGCGAGTTTGAACCTCGGCGGCGTGCCGGGC
ATGCCGCCGCGAGGCGTCCCCAACCAGCTGCAGCAGCAGCAGCAGCAGCC
GTCTCAGCAGCAGCAGCAGCAGCAGCCGCGACCAAGTAACCCGGGGCCCG
GCGCTAACCCCAACCCCGCGCGACCACCGCCGCCGTCAGGCCGGGCTGCC
GTGGGCGGCAGCACCGCCAGGGGGCCCGCACGCACACCCGTCCCCTCGGG
TCGGGCAGCGGTAGGTGGCGGTGGCAACGTTGTTCGAAACAGCACCACCA
TGGTGCCTGCCGGGGGTTCCTCCCAGGCGCCTGTGCGTGTCGGATCCGCG
CAGGGGCAGCAGTCGAATCCACAGTTCTTACAGGGCTCAGGACAGATGCA
GCAGCCGAATCTTGTTCTGTCGCCGCCGCCGTCTCGCCGCCAGGGCCAGC
CGTGCGACCGGTGCAAGGCGCGAGCCTCATCCGTCCGAATTCTACACCGG
CTGTTATTTCCGCGCTGGATCCAGATGCTGTCGATACGTTCGAGCCACAA
GCAGCCCCTCCGCCGCCGCAGCAAAGCTCTCAGCCTCGACAGCAAGGACA
GCAGCAAGGATCTCACCCCGGAAGCCCGGTCCTGCCGGCGACGGCGACGG
TGGGGTACCGACGACAGTCGGCGCCGACAGGGCTGTCGCCTGCGAGTTTG
AACCTCGGCGGCGTGCCGGGCATGCCGCCGCGAGGCGTCCCCAACCAGCT
GCAGCAGCAGCAGCAGCAGCCGTCTCAGCAGCAGCAGCAGCAGCAGCCGC
GACCAAGTAACCCGGGGCCCGGCGCTAACCCCAACCCCGCGCGACCACCG
CCGCCGTCAGGCCGGGCTGCCGTGGGCGGCAGCACCGCCAGGGGGCCCGC
ACGCACACCCGTCCCCTCGGGTCGGGCAGCGGTAGGTGGCGGTGGCAACG
TTGTTCGAAACAGCACCACCATGGTGCCTGCCGGGGGTTCCTCCCAGGCG
CCTGTGCGTGTCGGATCCGCGCAGGGGCAGCAGTCGAATCCACAGTTCTT
ACAGGGCTCAGGACAGATGCAGCAGCCGAATCTT
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