prot_L-elsbetiae_contig888.17902.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig888.17902.1
Unique Nameprot_L-elsbetiae_contig888.17902.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length414
Homology
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BLAST of mRNA_L-elsbetiae_contig888.17902.1 vs. uniprot
Match: A0A6H5KQX8_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX8_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 7.710e-46
Identity = 194/490 (39.59%), Postives = 218/490 (44.49%), Query Frame = 0 
Query:   20 PSRAKSTSPSPTPLGSFNSTIEVGTNGLQNREPRSSSQDRRSXXXXXXXXXXXXXXXXXXPLPPGADKIMEMGFSARKARAALERSGGDSGQAVEWLLSQPSSPG-DGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PVFDQTAFTPVLIPEKPGAIVLAS---SFTGGGGSVA---------------------AAVSPPGPAVRPVQ--------------------GASLIRPNSTPAVISALDPDAVDTFEPQAAPXXXXXXXQPRQQGQQQG---------------------SHPGSPVLPATATVG-YRRQSAPTGLSPASLNLGGVPGM-PPRGVPNQLQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXX---------------------------PSGRAAVGGSTARGXXXXXXXXXXXXXXXGGNVVRNST----TMVPAGGSSQAPVRVG-SAQGQQSNPQFLQG 405
            P RAKS SP P      N   E G NGL+ REPRSSSQDR                     LPPGADKIMEMGFSARKARAALERS GD  QAVEWLL+ PS+P  D G                                     PVFDQ AFTPVLIP KPGAIV+AS   ++T  GG+V                      A +S PGP  +                       G+ L RP STP++ISALDPD+VDTFEP  AP        PRQ  Q                        S  GSPV  A A  G +RR+SAP GLS  ++NLGG  GM PPRGVP+Q QQ                             P                             PSG AAVGGST+R XXXXXXXXXXXXXXXGG+VV   +    ++VPAG         G + Q QQ  PQF QG
Sbjct: 1246 PLRAKSMSPPPVSFSKLNDVTEAGKNGLEKREPRSSSQDRGGVARKKSSGS----------LPPGADKIMEMGFSARKARAALERSDGDVDQAVEWLLNHPSAPDEDSGDEEVGDDARPPSPSSASPPPGRKSLPPKKSKPLKPQNPVFDQQAFTPVLIPAKPGAIVVASGPNAWTPPGGAVGXXXXXXXXXXXXXXSTALTLVAPLSAPGPPPQXXXXXXXXXXXXXXXXXXQGGGGGSGLSRPRSTPSIISALDPDSVDTFEPHVAPL-------PRQASQSPXXXXXXXXXXXXXXXXXXXXXXSQLGSPVPAAAAASGVHRRKSAPMGLSLGNVNLGG--GMSPPRGVPSQQQQGAQQPQRSTSASPPSLGPILGSASSPQLRPQLHQQQXXHQPRPSDPSLGTNPGPARPPPPSGPAAVGGSTSRXXXXXXXXXXXXXXXXGGSVVGGGSNAGRSLVPAGXXXXXXXXXGPTQQHQQPRPQFQQG 1716
[Close]
BLAST of mRNA_L-elsbetiae_contig888.17902.1 vs. uniprot
Match: D7G6Y8_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y8_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 1.500e-42
Identity = 152/332 (45.78%), Postives = 166/332 (50.00%), Query Frame = 0 
Query:   20 PSRAKSTSPSPTPLGSFNSTIEVGTNGLQNREPRSSSQDRRSXXXXXXXXXXXXXXXXXXPLPPGADKIMEMGFSARKARAALERSGGDSGQAVEWLLSQPSSPG-DGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PVFDQTAFTPVLIPEKPGAIVLAS---SFTGGGGS----------------------VAAAVSPPGPAVRPVQ--------------------GASLIRPNSTPAVISALDPDAVDTFEPQAAPXXXXXXXQPRQQGQQQ------------------GSHPGSPV-LPATATVGYRRQSAPTGLS 282
            PSRAKS SP P      N   EVG NGL+ REPRSSSQDR                     LPPGADKIMEMGFSARKARAALERS GD  QAVEWLL+ PS+P  D G             XXXXXXXX    XXX         PVFDQ AFTPVLIP KPGAIV+AS   ++T  GG+                      + A +S PGP  +                       G+ L RP STP++ISALDPD+VDTFEPQ AP        PRQ  Q                     S  GSPV   ATA  GYRRQSAPTGLS
Sbjct: 1539 PSRAKSMSPPPVSFSKLNDATEVGKNGLEKREPRSSSQDRGGVARKKSSGS----------LPPGADKIMEMGFSARKARAALERSDGDVDQAVEWLLTHPSAPDEDSGDEEPEDDALPPSPXXXXXXXXRKSLXXXKSKPLKPQNPVFDQQAFTPVLIPAKPGAIVVASGPNAWTSPGGAGXXXXXXXXXXXXXXXXSTALTLVAPLSAPGPPPQXXXXXXXXXXXXXXXXXXXXXGGGSGLSRPRSTPSIISALDPDSVDTFEPQVAPL-------PRQASQSPXXXXXXXXXXXXXXXXGPASQLGSPVPAAATAAGGYRRQSAPTGLS 1853
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig888.17902.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQX8_9PHAE7.710e-4639.59UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G6Y8_ECTSI1.500e-4245.78UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015940Ubiquitin-associated domainSMARTSM00165uba_6coord: 81..118
e-value: 1.7E-4
score: 30.9
IPR015940Ubiquitin-associated domainPFAMPF00627UBAcoord: 87..116
e-value: 5.0E-5
score: 23.1
IPR015940Ubiquitin-associated domainPROSITEPS50030UBAcoord: 86..119
score: 11.173
NoneNo IPR availableGENE3D1.10.8.10coord: 84..155
e-value: 4.8E-11
score: 44.5
IPR009060UBA-like superfamilySUPERFAMILY46934UBA-likecoord: 86..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig888contigL-elsbetiae_contig888:2366..4758 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig888.17902.1mRNA_L-elsbetiae_contig888.17902.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig888 2334..4758 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig888.17902.1 ID=prot_L-elsbetiae_contig888.17902.1|Name=mRNA_L-elsbetiae_contig888.17902.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=414bp
MPGSASGARPPNPGRPAGPPSRAKSTSPSPTPLGSFNSTIEVGTNGLQNR
EPRSSSQDRRSTSRETSGGGGGGGGGGGGPLPPGADKIMEMGFSARKARA
ALERSGGDSGQAVEWLLSQPSSPGDGGEDSDEDVRPPSPSTASPPARKSL
KKPKPQKPQNPVFDQTAFTPVLIPEKPGAIVLASSFTGGGGSVAAAVSPP
GPAVRPVQGASLIRPNSTPAVISALDPDAVDTFEPQAAPPPPQQSSQPRQ
QGQQQGSHPGSPVLPATATVGYRRQSAPTGLSPASLNLGGVPGMPPRGVP
NQLQQQQQQPSQQQQQQQPRPSNPGPGANPNPARPPPPSGRAAVGGSTAR
GPARTPVPSGRAAVGGGGNVVRNSTTMVPAGGSSQAPVRVGSAQGQQSNP
QFLQGSGQMQQPNL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015940UBA
IPR009060UBA-like_sf