mRNA_L-elsbetiae_contig887.17894.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig887.17894.1 vs. uniprot
Match: D7G7E8_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E8_ECTSI) HSP 1 Score: 140 bits (354), Expect = 3.110e-35 Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 2
Query: 665 GVVRGLVGLQNLGNTCFMNSALQCLMNCEALADYFLGFNWKGEINKGNFLGHGGLMASAFGALTNEIWTSKKASLRPGDFKAQGG 919
GV GLQNLGNTCFMNSALQCL NCEALADYFLGF+WK EIN+GNFLGH GLMASAFG+L N++W S KASLRPGDFK Q G
Sbjct: 18 GVACFAAGLQNLGNTCFMNSALQCLFNCEALADYFLGFDWKREINRGNFLGHKGLMASAFGSLANDMWRSDKASLRPGDFKTQVG 102
BLAST of mRNA_L-elsbetiae_contig887.17894.1 vs. uniprot
Match: A0A835YTE2_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTE2_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.930e-19 Identity = 51/117 (43.59%), Postives = 66/117 (56.41%), Query Frame = 2
Query: 614 STYGELKVLVETKKLGGGVVRGLVGLQNLGNTCFMNSALQCLMNCEALADYFLGFNWKGEINKGNFLGHGGLMASAFGALTNEIW------------------TSKKASLRPGDFKA 910
S Y E+ LV ++ G RGL+GL N+GNTCFMN+ALQCL NC L DYFL ++++ EIN N GHGG +A A+G L N +W + +L P DFKA
Sbjct: 1 SNYDEVHELVLSRLSGPQYHRGLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKA 117
BLAST of mRNA_L-elsbetiae_contig887.17894.1 vs. uniprot
Match: A0A7S4REU9_9STRA (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4REU9_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 7.060e-19 Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 2
Query: 677 GLVGLQNLGNTCFMNSALQCLMNCEALADYFLGFNWKGEINKGNFLGHGGLMASAFGALTNEIWTSKKASLRPGDFKA 910
G+VGLQNLGNTCFMNS+LQCL + L DYFLG++++ EIN NFLG G +A+A+ L E+W SKK SL P FKA
Sbjct: 130 GVVGLQNLGNTCFMNSSLQCLSHTIPLTDYFLGYDYRKEINHENFLGTKGELANAYAVLMKEMWLSKKKSLAPSSFKA 207
BLAST of mRNA_L-elsbetiae_contig887.17894.1 vs. uniprot
Match: A0A7R9WIF9_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WIF9_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.980e-18 Identity = 54/114 (47.37%), Postives = 72/114 (63.16%), Query Frame = 2
Query: 578 SGRLSIRMSRQPSTYGELKVLVETKKLGGGVVR---GLVGLQNLGNTCFMNSALQCLMNCEALADYFLGFNWKGEINKGNFLGHGGLMASAFGALTNEIWTSKKASLRPGDFKA 910
SGR + +SR STY + +V T G V++ GLVGL+NLGNTCF+NS+LQCL N L DYFLG+N++ EIN NFLG G + +A+ AL +W S+ P FK+
Sbjct: 138 SGRTHLAVSRA-STYDHVHNVVLTTFEGQDVLKRRAGLVGLRNLGNTCFLNSSLQCLSNTIPLTDYFLGYNYRKEINYTNFLGSKGELVTAYAALVKNLWMGDNKSIDPSIFKS 250
BLAST of mRNA_L-elsbetiae_contig887.17894.1 vs. uniprot
Match: A0A448ZB53_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZB53_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.090e-18 Identity = 49/107 (45.79%), Postives = 67/107 (62.62%), Query Frame = 2
Query: 614 STYGELKVLV-------ETKKLGGGVVRGLVGLQNLGNTCFMNSALQCLMNCEALADYFLGFNWKGEINKGNFLGHGGLMASAFGALTNEIWTSKKASLRPGDFKAQ 913
STY + +V E K V G++GL+NLGNTCF+NS+LQCL L DYFLG++++ EINK NFLG GG + +A+ LT ++W K+ + P DFK Q
Sbjct: 112 STYSHVHDIVMYNLSEAEISKHDQNVPMGVIGLKNLGNTCFLNSSLQCLSATIPLTDYFLGYDYRSEINKKNFLGTGGKLVTAYAELTKQLWLGSKSVVEPIDFKKQ 218
BLAST of mRNA_L-elsbetiae_contig887.17894.1 vs. uniprot
Match: A0A1E7FE03_9STRA (Cysteine proteinase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE03_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 8.770e-18 Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 2
Query: 677 GLVGLQNLGNTCFMNSALQCLMNCEALADYFLGFNWKGEINKGNFLGHGGLMASAFGALTNEIWTSKKASLRPGDFKAQ 913
G++GL+NLGNTCF+NS+LQCL L DYFLG++++ EINK NFLG GG +++A+ LT ++W K+ + P FK Q
Sbjct: 1 GVIGLRNLGNTCFLNSSLQCLSATIPLTDYFLGYDYRSEINKKNFLGTGGRLSTAYAELTKQMWLGSKSVVEPISFKKQ 79
BLAST of mRNA_L-elsbetiae_contig887.17894.1 vs. uniprot
Match: A0A177U6Y4_9BASI (Uncharacterized protein (Fragment) n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U6Y4_9BASI) HSP 1 Score: 94.7 bits (234), Expect = 2.030e-17 Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 2
Query: 665 GVVRGLVGLQNLGNTCFMNSALQCLMNCEALADYFLGFNWKGEINKGNFLGHGGLMASAFGALTNEIWTSKKASLRPGDFK 907
G +GLVGLQNLGNTCFMNSALQCL N + L YF + E+N N LG GG +A AFGAL N++W + S+ P +FK
Sbjct: 546 GRAKGLVGLQNLGNTCFMNSALQCLSNTKELQQYFSSGAYSSELNPDNPLGQGGALAQAFGALLNKLWDGNQTSIAPREFK 626
BLAST of mRNA_L-elsbetiae_contig887.17894.1 vs. uniprot
Match: A0A177U6J4_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U6J4_9BASI) HSP 1 Score: 94.4 bits (233), Expect = 3.150e-17 Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 2
Query: 674 RGLVGLQNLGNTCFMNSALQCLMNCEALADYFLGFNWKGEINKGNFLGHGGLMASAFGALTNEIWTSKKASLRPGDFK 907
+GLVGLQNLGNTCFMNSALQCL N + L YF ++ E+N N LG GG +A AFGAL N++W + S+ P +FK
Sbjct: 539 KGLVGLQNLGNTCFMNSALQCLSNTKELQQYFSSGAYQSELNTDNPLGQGGALAQAFGALLNKLWDGNQTSIAPREFK 616
BLAST of mRNA_L-elsbetiae_contig887.17894.1 vs. uniprot
Match: A0A1Y2EHB1_9BASI (Uncharacterized protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2EHB1_9BASI) HSP 1 Score: 93.6 bits (231), Expect = 5.550e-17 Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 2
Query: 623 GELKVLVETKKLGG-GVVRGLVGLQNLGNTCFMNSALQCLMNCEALADYFLGFNWKGEINKGNFLGHGGLMASAFGALTNEIWTSKKASLRPGDFK 907
G L +K +GG G RGL GLQNLGNTCFMNSALQC+ N + L +YF+ +K E+N+ N LG G +A AFG L IW+S +S+ P +FK
Sbjct: 361 GLFGALTRSKGMGGSGRQRGLTGLQNLGNTCFMNSALQCMSNTKELQEYFVSGVYKDELNRDNPLGMRGQVAEAFGQLIERIWSSSGSSVAPREFK 456
BLAST of mRNA_L-elsbetiae_contig887.17894.1 vs. uniprot
Match: UPI0009F2A254 (ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F2A254) HSP 1 Score: 92.0 bits (227), Expect = 1.450e-16 Identity = 50/105 (47.62%), Postives = 66/105 (62.86%), Query Frame = 2
Query: 599 MSRQPSTYGELKVLVETKKLGGGVVRGLVGLQNLGNTCFMNSALQCLMNCEALADYFLGFNWKGEINKGNFLGHGGLMASAFGALTNEIWTSKKASLRPGDFKAQ 913
+S +T E + T K G V GL+GL+NLGNTCFMNSA+QCL + + L +YFLG ++ EIN N LG GG +A AFG L ++W K + P DFKA+
Sbjct: 247 LSNGSTTRAEYDLCFGTSK--GSVSFGLIGLENLGNTCFMNSAVQCLAHTQRLVEYFLG-DYSREINYQNSLGMGGELALAFGELLRKLWAPNKTPIAPRDFKAK 348 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig887.17894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig887.17894.1 >prot_L-elsbetiae_contig887.17894.1 ID=prot_L-elsbetiae_contig887.17894.1|Name=mRNA_L-elsbetiae_contig887.17894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=332bp MGTSSSSLARTKRRASKNSTESVGRHGESIRGSRASTGANGSSSRRGSLSback to top mRNA from alignment at L-elsbetiae_contig887:17246..21077+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig887.17894.1 ID=mRNA_L-elsbetiae_contig887.17894.1|Name=mRNA_L-elsbetiae_contig887.17894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3832bp|location=Sequence derived from alignment at L-elsbetiae_contig887:17246..21077+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig887:17246..21077+ >mRNA_L-elsbetiae_contig887.17894.1 ID=mRNA_L-elsbetiae_contig887.17894.1|Name=mRNA_L-elsbetiae_contig887.17894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1992bp|location=Sequence derived from alignment at L-elsbetiae_contig887:17246..21077+ (Laminarionema elsbetiae ELsaHSoW15)back to top |