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Homology
BLAST of mRNA_L-elsbetiae_contig8868.17890.1 vs. uniprot
Match: A0A6H5LC44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC44_9PHAE) HSP 1 Score: 177 bits (450), Expect = 1.310e-46 Identity = 113/162 (69.75%), Postives = 123/162 (75.93%), Query Frame = 1
Query: 130 GTGRRAERGRLSTLLDQLKDEIEFHANAKRDMDMELKRVRQRHRLMEDRAAEEKQKALAAEAKATKLQAKNKILNDDNTQLRQILQQIQDAGVLQQEVGNAPQSQQQXXP-----GAAGAPIPMSESSSGVQSVAPISSNSNAGGTGAQG------GIGGML 582
G GRRAERGRLSTLLDQLKDEI+FHA AKRDMD+ELKRVRQRHRLMEDRAAEEKQK A+EAK KLQAKNK L+++NT+L+QILQQIQDAGVL QE G A QS Q XX G +P SESSSGV S P SS+SN GG A G GIGGML
Sbjct: 398 GXGRRAERGRLSTLLDQLKDEIDFHAAAKRDMDLELKRVRQRHRLMEDRAAEEKQKTAASEAKVAKLQAKNKFLSEENTKLKQILQQIQDAGVLPQEAGGASQSHQXXXXXXXXXSPTGIALPASESSSGVSSGTPASSSSNKGGIMAHGQSPGGTGIGGML 559
BLAST of mRNA_L-elsbetiae_contig8868.17890.1 vs. uniprot
Match: D7FQ62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ62_ECTSI) HSP 1 Score: 152 bits (384), Expect = 1.210e-41 Identity = 81/95 (85.26%), Postives = 89/95 (93.68%), Query Frame = 1
Query: 115 RVKDDGTGRRAERGRLSTLLDQLKDEIEFHANAKRDMDMELKRVRQRHRLMEDRAAEEKQKALAAEAKATKLQAKNKILNDDNTQLRQILQQIQD 399
RVKDDGTGRRAERGRLSTLLDQLKDEI+FHA AKRDMD+ELKRVRQRHRLMEDRAAEEKQK A+EAK KLQAKNK L+++NT+L+QILQQIQD
Sbjct: 38 RVKDDGTGRRAERGRLSTLLDQLKDEIDFHAAAKRDMDLELKRVRQRHRLMEDRAAEEKQKTAASEAKVAKLQAKNKFLSEENTKLKQILQQIQD 132
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-01_007320.1 |
| Exons | 4 |
| Model size | 964 |
| Cds size | 963 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816963.980258-CDS-L-elsbetiae_contig8868:311..434 | 1622816963.980258-CDS-L-elsbetiae_contig8868:311..434 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8868 312..434 - |
| 1691683945.8385336-CDS-L-elsbetiae_contig8868:311..434 | 1691683945.8385336-CDS-L-elsbetiae_contig8868:311..434 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8868 312..434 - |
| 1622816963.9932482-CDS-L-elsbetiae_contig8868:1077..1521 | 1622816963.9932482-CDS-L-elsbetiae_contig8868:1077..1521 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8868 1078..1521 - |
| 1691683945.8500247-CDS-L-elsbetiae_contig8868:1077..1521 | 1691683945.8500247-CDS-L-elsbetiae_contig8868:1077..1521 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8868 1078..1521 - |
| 1622816964.0034423-CDS-L-elsbetiae_contig8868:2028..2176 | 1622816964.0034423-CDS-L-elsbetiae_contig8868:2028..2176 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8868 2029..2176 - |
| 1691683945.8615053-CDS-L-elsbetiae_contig8868:2028..2176 | 1691683945.8615053-CDS-L-elsbetiae_contig8868:2028..2176 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8868 2029..2176 - |
| 1622816964.0155709-CDS-L-elsbetiae_contig8868:2873..3121 | 1622816964.0155709-CDS-L-elsbetiae_contig8868:2873..3121 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8868 2874..3121 - |
| 1691683945.8726182-CDS-L-elsbetiae_contig8868:2873..3121 | 1691683945.8726182-CDS-L-elsbetiae_contig8868:2873..3121 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8868 2874..3121 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8868.17890.1 >prot_L-elsbetiae_contig8868.17890.1 ID=prot_L-elsbetiae_contig8868.17890.1|Name=mRNA_L-elsbetiae_contig8868.17890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=321bp
MGIGASGGGGGLSQGGSGAGGSGTGSGAGGSAGGGGVVRVKDDGTGRRAE
RGRLSTLLDQLKDEIEFHANAKRDMDMELKRVRQRHRLMEDRAAEEKQKA
LAAEAKATKLQAKNKILNDDNTQLRQILQQIQDAGVLQQEVGNAPQSQQQ
QQPGAAGAPIPMSESSSGVQSVAPISSNSNAGGTGAQGGIGGMLAAAAAQ
QQQQQQQVQGQGMRKGSGSMQQQQHSAPLGGAGRGQQGLQHPLSLGPSSR
ISPSAPGLEDPRSPQRRRSSDPAGPESGTVPSTNHHWRNATHTGVLGVMG
MSSPLPSPANSGPWQGHGKNW back to topmRNA from alignment at L-elsbetiae_contig8868:312..3121- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8868.17890.1 ID=mRNA_L-elsbetiae_contig8868.17890.1|Name=mRNA_L-elsbetiae_contig8868.17890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2810bp|location=Sequence derived from alignment at L-elsbetiae_contig8868:312..3121- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCATCGGGGCGAGCGGTGGCGGCGGCGGCTTGTCGCAGGGCGGAAG
CGGCGCCGGCGGCAGCGGCACGGGGTCGGGCGCCGGCGGGAGCGCCGGCG
GGGGCGGCGTCGTGCGGGTAAAGGACGACGGGACGGGCCGCCGGGCGGAG
AGGGGGCGGCTCAGCACGCTGCTTGATCAGCTCAAGGACGAGATTGAATT
CCACGCGAACGCGAAGAGAGACATGGACATGGAATTGAAGCGGGTGAGGC
AGTCGGTGTTGCGATATCAAGCATAATAGGAAGCTCGCCGGCCAGCGTGT
TGGGCTGCGCCCGTTGTTGTCTCGGAGGGAAGCAATGGAGAGAGGGTTGC
TGTTGTTGTTATTGTTGTTGCGCTCTTGAGTTCGCTGCCCGCATCGACCC
GTGTGTATTTTTTGTCTTGCCGGAGAGTGCGAGGCACGCGGGGCGTGAGT
GGGCCACGAGATGGTGTGAAGCACTCACTAAAAATGTCAACCACGTGCAC
GAAACATGATCTCCCGTAGCGCATAAATACGAATACATATGTATCACCAG
CACACCACGACTCAAATGTCGCTTCGCGTGTAGGCCAGCCCAAAAGGGAT
CGACCTGCCTTTTTACTTCGCCTCGCGGGACAGAGAGACGCCGATCACGG
ACGCCCTTGAAATCGGGACCACTAGATGTACTTGACACCAGAGGTGCCAG
CTACATATCTACTACTCTGAAACATGCTGGGAATGCTGTTCAAGACACGG
ATAGGACTGCCCCTGCTCTGCAACCCACCCCCCCTGTCGCCGCCCCCCCC
CCCCCCTACAAGTAGCACCACGCCATGCCGCAGACCTCCAAGGTATGCCA
CTATTTTCATTTCCATATTTATATACATTATATGTATAGAAGTGTGTATA
TGTAACCGTTCGACACCGTTCGAACGCACCCCACCCGCAGGTGAGGCAGC
GGCATCGCCTGATGGAGGACCGGGCGGCGGAGGAGAAGCAGAAGGCCTTG
GCAGCGGAGGCCAAGGCAACCAAGCTGCAGGCCAAGAACAAGATCCTCAA
CGACGACAACACGCAACTGAGACAGATCCTGCAGCAGATCCAGGTAAGTC
GAATGGCAACGCTCGAAATCCACTGGTGCATAGTAGGTAGGCGTTCGTTG
GTGGTGGTGGCGGCAGATGCAGCAGCAGCGAGAACGCCCCCGAGTATGTA
GGACGCGGATGGCATAGAGAGCCGCTGGAGGAGGCAAGGGATGATGGGTT
GCGAAGCAGTTTTGGTGCTGTTCGTGCTGGTTCTTTCTTCCCCTGCGCGG
AACAGCAGTAGTGGACCCCGAGAAATGGCGGGACGAAAAGAGGCGCAAGG
AGGCGCGCGAATGCATTTCGTGTTGTTTGCTGTAATATTATAGCTTTATA
TTCTTCTGAGAAAACGACGGATGACGGTCTTGGTTGACCTGATTTTTCTG
TGCCTCCAGCATCCCGAAAGAACCAGCTGTCACCCGCGCCCAGAAGTTGA
CCGCGGATGAGACTAACCGACCATGTACGTACCACACCCGTCATCGTCTT
GATTCGTGTGCTCCGGATCGGGGATCTCTGTTTCCTTACCGTGTTTCCAG
GATGCGGGTGTTTTGCAGCAGGAGGTGGGGAATGCACCGCAATCACAGCA
GCAGCAGCAGCCTGGTGCGGCAGGGGCACCGATCCCGATGAGCGAGTCCA
GCTCGGGGGTCCAGAGCGTTGCTCCCATCTCGTCCAACAGCAACGCCGGC
GGCACCGGCGCGCAAGGAGGAATAGGGGGGATGCTGGCTGCTGCCGCCGC
CCAGCAGCAGCAGCAGCAGCAGCAGGTGCAAGGGCAAGGGATGCGGAAGG
GATCGGGGTCGATGCAGCAGCAGCAGCACTCTGCGCCTCTCGGTGGTGCG
GGGCGCGGTCAGCAGGGACTGCAGCATCCCCTGAGCCTGGGCCCTAGCTC
TCGAATATCTCCGTCGGCGCCTGGGCTGGAAGACCCGCGGTCGCCGCAGC
GAAGGAGGTCGAGCGACCCCGCGGGGCCGGAATCCGGGACGGTGGTGCGT
GTTCAGTTGTGTTTTTCTGGGTATGGTTTCGTTTTTATTTTCCTTGGGAA
CCTTGCGTTTGTATTCGGGGGAGGGGGGGGCGGCAGCCTCGCCCGCGAGT
CGGGAAGAGGGCCCCGCGCTCGCCCGCGAGTCGGGAAGAGGGCCCCGCGC
TCCGACACATATTTACAGCGCAACACATGCGGCGTTGTTTTGGTGTCTCG
GGGTGAAAGATTTGGGTAGTGGGGGGTAGTTTGTTCTCGAGGCGCGTTTT
TTGCTCAAAACGGGTTTTGCTGAGCTGTCGATGTGTCGCACGAATGTGGG
TGGATCCTCTCGTGCGATGCGTTTTGTGAATACACGTACATTATACATGT
TCTACAGAGTGTCGGTGGCCTTCGTCCAAACCCCGTGAAAAAATCGTTCC
AGGGGGGATGCTAAATATAGTTGTGTTTTTTTTTGTGTTTTCCTGCCGCA
TTCCTGGCTATGCGCGAATTTAGTTATCTCCGGCGGGCAGAGAGCGAGGA
GTGCCTCGATCAGCACCGGAAGGGAGACAAGCAACCCAGGCTCAGCGTAG
TCCTTGTCCGCATTTACTTGTGTCGTCCTTAACGCTCTACGCTACGCCCC
CCCCCCCCCCCCCCTCGTCCCTCCAACCTATGCGCAGCCTTCCACCAATC
ACCACTGGAGGAATGCTACCCACACCGGGGTCCTCGGAGTCATGGGCATG
AGCAGCCCTCTACCCTCACCGGCTAACTCCGGCCCGTGGCAAGGGCACGG
GAAAAACTGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8868:312..3121- >mRNA_L-elsbetiae_contig8868.17890.1 ID=mRNA_L-elsbetiae_contig8868.17890.1|Name=mRNA_L-elsbetiae_contig8868.17890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1926bp|location=Sequence derived from alignment at L-elsbetiae_contig8868:312..3121- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCATCGGGGCGAGCGGTGGCGGCGGCGGCTTGTCGCAGGGCGGAAG
CGGCGCCGGCGGCAGCGGCACGGGGTCGGGCGCCGGCGGGAGCGCCGGCG
GGGGCGGCGTCGTGCGGGTAAAGGACGACGGGACGGGCCGCCGGGCGGAG
AGGGGGCGGCTCAGCACGCTGCTTGATCAGCTCAAGGACGAGATTGAATT
CCACGCGAACGCGAAGAGAGACATGGACATGGAATTGAAGCGGGTGAGAT
GGGCATCGGGGCGAGCGGTGGCGGCGGCGGCTTGTCGCAGGGCGGAAGCG
GCGCCGGCGGCAGCGGCACGGGGTCGGGCGCCGGCGGGAGCGCCGGCGGG
GGCGGCGTCGTGCGGGTAAAGGACGACGGGACGGGCCGCCGGGCGGAGAG
GGGGCGGCTCAGCACGCTGCTTGATCAGCTCAAGGACGAGATTGAATTCC
ACGCGAACGCGAAGAGAGACATGGACATGGAATTGAAGCGGGTGAGGCAG
CGGCATCGCCTGATGGAGGACCGGGCGGCGGAGGAGAAGCAGAAGGCCTT
GGCAGCGGAGGCCAAGGCAACCAAGCTGCAGGCCAAGAACAAGATCCTCA
ACGACGACAACACGCAACTGAGACAGATCCTGCAGCAGATCCAGGCAGCG
GCATCGCCTGATGGAGGACCGGGCGGCGGAGGAGAAGCAGAAGGCCTTGG
CAGCGGAGGCCAAGGCAACCAAGCTGCAGGCCAAGAACAAGATCCTCAAC
GACGACAACACGCAACTGAGACAGATCCTGCAGCAGATCCAGGATGCGGG
TGTTTTGCAGCAGGAGGTGGGGAATGCACCGCAATCACAGCAGCAGCAGC
AGCCTGGTGCGGCAGGGGCACCGATCCCGATGAGCGAGTCCAGCTCGGGG
GTCCAGAGCGTTGCTCCCATCTCGTCCAACAGCAACGCCGGCGGCACCGG
CGCGCAAGGAGGAATAGGGGGGATGCTGGCTGCTGCCGCCGCCCAGCAGC
AGCAGCAGCAGCAGCAGGTGCAAGGGCAAGGGATGCGGAAGGGATCGGGG
TCGATGCAGCAGCAGCAGCACTCTGCGCCTCTCGGTGGTGCGGGGCGCGG
TCAGCAGGGACTGCAGCATCCCCTGAGCCTGGGCCCTAGCTCTCGAATAT
CTCCGTCGGCGCCTGGGCTGGAAGACCCGCGGTCGCCGCAGCGAAGGAGG
TCGAGCGACCCCGCGGGGCCGGAATCCGGGACGGTGGATGCGGGTGTTTT
GCAGCAGGAGGTGGGGAATGCACCGCAATCACAGCAGCAGCAGCAGCCTG
GTGCGGCAGGGGCACCGATCCCGATGAGCGAGTCCAGCTCGGGGGTCCAG
AGCGTTGCTCCCATCTCGTCCAACAGCAACGCCGGCGGCACCGGCGCGCA
AGGAGGAATAGGGGGGATGCTGGCTGCTGCCGCCGCCCAGCAGCAGCAGC
AGCAGCAGCAGGTGCAAGGGCAAGGGATGCGGAAGGGATCGGGGTCGATG
CAGCAGCAGCAGCACTCTGCGCCTCTCGGTGGTGCGGGGCGCGGTCAGCA
GGGACTGCAGCATCCCCTGAGCCTGGGCCCTAGCTCTCGAATATCTCCGT
CGGCGCCTGGGCTGGAAGACCCGCGGTCGCCGCAGCGAAGGAGGTCGAGC
GACCCCGCGGGGCCGGAATCCGGGACGGTGCCTTCCACCAATCACCACTG
GAGGAATGCTACCCACACCGGGGTCCTCGGAGTCATGGGCATGAGCAGCC
CTCTACCCTCACCGGCTAACTCCGGCCCGTGGCAAGGGCACGGGAAAAAC
TGGCCTTCCACCAATCACCACTGGAGGAATGCTACCCACACCGGGGTCCT
CGGAGTCATGGGCATGAGCAGCCCTCTACCCTCACCGGCTAACTCCGGCC
CGTGGCAAGGGCACGGGAAAAACTGG back to top
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