mRNA_L-elsbetiae_contig886.17878.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig886.17878.1
Unique NamemRNA_L-elsbetiae_contig886.17878.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig886.17878.1 vs. uniprot
Match: A0A6H5LM15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LM15_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 4.510e-50
Identity = 178/461 (38.61%), Postives = 220/461 (47.72%), Query Frame = 3 
Query:   42 AEFDPHARVLRAVHQEFLDHGL-VLQQQPAECPNFGQSSAGAFPPLRYGDVGGGGRVIMVRALAIFDDLIVNATA--TSPRVAGDCDLDGE-IRRRIKLNVMTWAPLLL----SGEAEAAAGVGNRERSKAPLQQRHQKQ----------RDGETAPLAXXXXXXXXXXXXRXXXREGTNDEMREEGSSHTLAAXXXXXXXXXXXTPPAPFSP-------SREAFRSRVLSGLLLHLCPPPGHFADLFGCGDELRRRILGMLDARDLATFGMASRSAAVSAVSNSLWSLRLQADFSESEQREGVALALPPRSSLERAYHHDRQRRSTSGGECGDHV----------------QEGRLWRCYGELVRVRRRREAKRQALLAEERHRVLQLVGFMGRRSRA----PYPAGLPRGPYHTPGPPVFPGYDW---------GPGVGDPADVLPLSPPSSIWGRGGW 1262
            AE D HARVL A+H E L +GL V  +  +      QS+AGAFPP+RY D GGGGRVI + ALA+FDDLIV+ TA  T  R  G     G+ + RR   +V  W+P LL    S + +  +G   + + +  +Q +  +Q          + G+  P A            R     G  D    E    TL + XXXXXXXXXX                +EAFRSRV+SGLLLHLCPPPGHFADL GCGDEL R +LGML ARDLA  G+  R+AAVS  ++ LW+  + ADFSE EQ     L L P                                           EG   R Y +L   R R+ A     L   R  VL++   +GR  RA    P+   LPRGP+HT G P  P Y           GPG+  P   LP SPPSS   R GW
Sbjct:   17 AEDDDHARVLLALHLELLAYGLNVHHRGDSPAVRMEQSNAGAFPPMRYVDGGGGGRVITIHALAMFDDLIVSGTAVATGGRDGGRDSRGGDAVHRRTTFSVSEWSPQLLLSSTSRDQQQQSGGVPKGQPQQQVQLKEGQQNAEGSSSGGTQSGDQCPTATKHPHLPE----RQASPPGDGDNDGRETGKGTLESSXXXXXXXXXXXXXXXXXXXXSLVGGGQEAFRSRVVSGLLLHLCPPPGHFADLLGCGDELLRHVLGMLGARDLAMVGLTGRAAAVSVAADCLWAKLVAADFSEREQH--AVLFLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEGASRRLYAKLSAARARQAAXXXXRL--RRSSVLEMAA-LGRLGRAWGLYPWAPYLPRGPFHTHGAPPSPEYGLLDSLGGDGTGPGLALP---LPPSPPSSSRWRSGW 465
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig886.17878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LM15_9PHAE4.510e-5038.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig886contigL-elsbetiae_contig886:3939..7008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_002740.1
Exons3
Model size2170
Cds size1302
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig886.17878.1prot_L-elsbetiae_contig886.17878.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig886 4802..7003 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816963.151717-UTR-L-elsbetiae_contig886:3938..48011622816963.151717-UTR-L-elsbetiae_contig886:3938..4801Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig886 3939..4801 -
1691683945.2543156-UTR-L-elsbetiae_contig886:3938..48011691683945.2543156-UTR-L-elsbetiae_contig886:3938..4801Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig886 3939..4801 -
1622816963.1977835-UTR-L-elsbetiae_contig886:7003..70081622816963.1977835-UTR-L-elsbetiae_contig886:7003..7008Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig886 7004..7008 -
1691683945.297325-UTR-L-elsbetiae_contig886:7003..70081691683945.297325-UTR-L-elsbetiae_contig886:7003..7008Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig886 7004..7008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816963.1624596-CDS-L-elsbetiae_contig886:4801..53261622816963.1624596-CDS-L-elsbetiae_contig886:4801..5326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig886 4802..5326 -
1691683945.2693155-CDS-L-elsbetiae_contig886:4801..53261691683945.2693155-CDS-L-elsbetiae_contig886:4801..5326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig886 4802..5326 -
1622816963.1767333-CDS-L-elsbetiae_contig886:5774..61251622816963.1767333-CDS-L-elsbetiae_contig886:5774..6125Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig886 5775..6125 -
1691683945.279492-CDS-L-elsbetiae_contig886:5774..61251691683945.279492-CDS-L-elsbetiae_contig886:5774..6125Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig886 5775..6125 -
1622816963.1874871-CDS-L-elsbetiae_contig886:6577..70031622816963.1874871-CDS-L-elsbetiae_contig886:6577..7003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig886 6578..7003 -
1691683945.2881794-CDS-L-elsbetiae_contig886:6577..70031691683945.2881794-CDS-L-elsbetiae_contig886:6577..7003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig886 6578..7003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig886.17878.1

>prot_L-elsbetiae_contig886.17878.1 ID=prot_L-elsbetiae_contig886.17878.1|Name=mRNA_L-elsbetiae_contig886.17878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=434bp
MAMNSNSLDEDAAEFDPHARVLRAVHQEFLDHGLVLQQQPAECPNFGQSS
AGAFPPLRYGDVGGGGRVIMVRALAIFDDLIVNATATSPRVAGDCDLDGE
IRRRIKLNVMTWAPLLLSGEAEAAAGVGNRERSKAPLQQRHQKQRDGETA
PLAAAAAAAEGGGGGRGGGREGTNDEMREEGSSHTLAAATATATATAAAT
PPAPFSPSREAFRSRVLSGLLLHLCPPPGHFADLFGCGDELRRRILGMLD
ARDLATFGMASRSAAVSAVSNSLWSLRLQADFSESEQREGVALALPPRSS
LERAYHHDRQRRSTSGGECGDHVQEGRLWRCYGELVRVRRRREAKRQALL
AEERHRVLQLVGFMGRRSRAPYPAGLPRGPYHTPGPPVFPGYDWGPGVGD
PADVLPLSPPSSIWGRGGWAPPLRGWGRGAWRR*
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mRNA from alignment at L-elsbetiae_contig886:3939..7008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig886.17878.1 ID=mRNA_L-elsbetiae_contig886.17878.1|Name=mRNA_L-elsbetiae_contig886.17878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3070bp|location=Sequence derived from alignment at L-elsbetiae_contig886:3939..7008- (Laminarionema elsbetiae ELsaHSoW15)
GGAACATGGCGATGAACAGCAACAGCTTGGACGAGGATGCCGCAGAGTTC
GACCCCCACGCCCGTGTCCTCCGTGCAGTCCACCAGGAGTTTCTCGATCA
CGGCTTGGTCCTGCAACAACAACCAGCAGAGTGCCCAAACTTCGGGCAGA
GCTCCGCCGGCGCCTTCCCGCCTCTGCGGTACGGCGACGTCGGGGGCGGG
GGGCGCGTGATCATGGTTCGCGCGTTGGCAATATTCGACGACCTCATCGT
AAACGCCACGGCGACTTCCCCACGCGTGGCAGGCGACTGCGACTTGGACG
GTGAAATTCGCCGCCGGATCAAGTTGAACGTCATGACCTGGGCCCCGCTG
CTTCTCTCGGGCGAGGCCGAAGCAGCAGCCGGAGTAGGAAACCGGGAAAG
AAGCAAGGCTCCTCTGCAGCAGAGGCACCAGGTGACAAAAAACGGTTTCG
TTATTGTATCAGCCGTCAGAAGTAGCAGAAGACAGAGAGGCAGGCTTCAA
ACATTTAGGATGAGATAACGTGTGTCGTGTGTCTCCATGCCCCCCCTCCT
CACGGCGGTCGGTTCTTGCAGAGCGGCTCTCCCTGGAGCACCCTCCGCGA
GCATTTCTTTGTTTGACCCCCCCCCCCCCCCAAGGATGGCTAGCAGCATC
TACGCATATTTTTTAGTTTCCGGCGTCCCGTAGACGACATAAATTTGTAA
AATACTACCTAATTTACCGCTTTCGAGGAGGATGTGCGTGTTTTCTCCGT
TGCCCCCGTTTCCCCGCATCAAAGAACAAGAAACACTCTGTGAGTCAAAT
AATCAAATGCACGTTCCTTTTGGAAACTGAAACTTCGTCGTCCCCCGGCA
CCAAACGTAAACTTCTTGGATGTTTATTCACAGAAGCAGCGAGACGGTGA
GACCGCTCCTCTTGCAGCAGCAGCAGCAGCAGCAGAAGGAGGAGGGGGGG
GAAGAGGAGGAGGAAGAGAAGGAACAAACGACGAGATGAGAGAGGAGGGA
TCCAGCCACACCCTTGCGGCGGCCACCGCCACCGCCACTGCAACGGCAGC
TGCAACCCCTCCGGCCCCCTTTTCCCCGTCGAGGGAGGCCTTCCGGTCGA
GAGTGCTGTCCGGGCTGTTGCTGCACCTCTGCCCCCCTCCCGGGCACTTC
GCGGACCTGTTCGGCTGCGGAGACGAGTTGCGCCGGCGCATCCTCGGGAT
GCTGGACGCCCGGGATTTGGCTACGTTTGGAATGGTAAGAGGACCTGGGC
TGAGACACAGCGGGGAAGGTAGTGGGGGGGAGGACAAAGAGAGCCAGAGC
TGACACGTGGCTCTCTTGGGGCTGTGGCATGGCGGCGAAGGTAGAGACAG
CAGTGGGGAGACAACGAGAGATATGCAAACGTGTGGCTCTCTGCATTAGC
TCCGTGCGCCATGTAGTGAACCGCCATGGGCGCACAACAACGGTTGCTTC
CCACGCTGGTATGATTCGACCTAAATAACACCGTACACAGCACACGATGA
GAAAACACATTATGATGGCGAAGTGTGGGGAAACCCGCCCCAGCTGTCGT
AGAGTCGTCTGCTACATAACGGAGGAGAAACGTGAGTGTGTTGATTAGCA
CGGAGTAGGTACTTTTGGGCTGCCCCCTTCGCACCCCCTCTTCTTACGCC
TCCCTTCACCCTACCTTTTTTATTTCTTGCAGGCCAGCCGCTCCGCGGCC
GTCAGCGCGGTGTCCAACTCTCTCTGGTCCCTGCGCCTACAGGCCGATTT
TTCCGAGAGCGAGCAGCGAGAAGGGGTCGCCCTGGCCCTGCCGCCGCGCT
CCTCCCTGGAACGGGCTTACCACCACGACCGGCAGCGGCGAAGCACAAGC
GGCGGCGAGTGCGGCGACCATGTCCAAGAGGGCAGGTTGTGGCGCTGCTA
CGGCGAGCTCGTGCGCGTTCGGAGGCGGAGGGAGGCCAAGAGGCAGGCCT
TGCTAGCCGAAGAGAGACACCGCGTCCTGCAGCTGGTAGGCTTCATGGGC
CGCCGATCCCGCGCCCCCTACCCCGCCGGCCTGCCCCGCGGACCGTACCA
CACGCCGGGGCCCCCCGTGTTCCCGGGTTACGACTGGGGGCCGGGGGTAG
GAGACCCTGCGGATGTGTTGCCCCTATCGCCACCCTCCTCGATCTGGGGC
AGAGGAGGGTGGGCGCCGCCGCTGAGGGGCTGGGGGCGAGGTGCGTGGCG
GCGCTAGGAGATGTCGCGGCGGCGTGAGTCGGAGACACGAGGCAGCAGCG
GTGGCGGCAGCGGCGGCGGCGATGGCGGTACCTTGTCCTTGCACCGGGTT
CTTGTTGGTGCTACTTACTGTACAGCTTCGAAGAAGCCCTCCTGCTTGAG
TCTCAAAAAGCGGTTTGACTTCTCGGGGCTGTGGGTTTAACGGTGCTTGC
GTTTCGGCGAGGGTATGTCTGAATGCATACATAGGTACGGTAGAGAGGAA
AGCACCCCCAGCGAAAGACCATTCCGCTGATTTAAACTCTTGGGACAGCA
CATTGCTTGATGTTCGAGTAAGGTTCAGGTACCCAGGTAGTAGCTAGCTC
TTGTGCTGTCTGGCCGGGGGCCACACGAGTAGTCGCCGTTCTGGCAACCA
CCGACCTTACCGTCGTGTGCGTGTCTTTGCCCTGGGGTTGGTAGCATTCG
ATGGGAGTGAGTGCAACAATCGGAGGGTAACTCAACCTTGTAGCGGTCTG
CTCTGTAAAATGTGTACCGTATGCGTGTCGTTGCCATGGGATTGTCAGTC
TTCTCTTGCTAGCACTCTCCCCCCCTTCTCCACTTCCCCTTTTTGCGCGT
AGGATATTACGTGTTTCTGGCTGTTGGCGGAAGGGGAAGATGTTGAGGGG
GAATACGCGAGTTGCGCTTTATGTCCACGAACACGGGATCGCGCGCGCAG
TAGCTATACCTAGCTGCGTTGTGGGCGGTTGCAGCATTGGGTTATCAGTG
GCGTTCCTGTTGCGCGATCTTGCCAGCTCATATTTTCGTATTATTTTTGT
AGATACGTCGAGGGAGGGGCGCGTGAGAGAGGCTGCTTCAGCATATGTAC
ATGGCACGCGACAAGCTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig886:3939..7008-

>mRNA_L-elsbetiae_contig886.17878.1 ID=mRNA_L-elsbetiae_contig886.17878.1|Name=mRNA_L-elsbetiae_contig886.17878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2604bp|location=Sequence derived from alignment at L-elsbetiae_contig886:3939..7008- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGATGAACAGCAACAGCTTGGACGAGGATGCCGCAGAGTTCGACCC
CCACGCCCGTGTCCTCCGTGCAGTCCACCAGGAGTTTCTCGATCACGGCT
TGGTCCTGCAACAACAACCAGCAGAGTGCCCAAACTTCGGGCAGAGCTCC
GCCGGCGCCTTCCCGCCTCTGCGGTACGGCGACGTCGGGGGCGGGGGGCG
CGTGATCATGGTTCGCGCGTTGGCAATATTCGACGACCTCATCGTAAACG
CCACGGCGACTTCCCCACGCGTGGCAGGCGACTGCGACTTGGACGGTGAA
ATTCGCCGCCGGATCAAGTTGAACGTCATGACCTGGGCCCCGCTGCTTCT
CTCGGGCGAGGCCGAAGCAGCAGCCGGAGTAGGAAACCGGGAAAGAAGCA
AGGCTCCTCTGCAGCAGAGGCACCAGATGGCGATGAACAGCAACAGCTTG
GACGAGGATGCCGCAGAGTTCGACCCCCACGCCCGTGTCCTCCGTGCAGT
CCACCAGGAGTTTCTCGATCACGGCTTGGTCCTGCAACAACAACCAGCAG
AGTGCCCAAACTTCGGGCAGAGCTCCGCCGGCGCCTTCCCGCCTCTGCGG
TACGGCGACGTCGGGGGCGGGGGGCGCGTGATCATGGTTCGCGCGTTGGC
AATATTCGACGACCTCATCGTAAACGCCACGGCGACTTCCCCACGCGTGG
CAGGCGACTGCGACTTGGACGGTGAAATTCGCCGCCGGATCAAGTTGAAC
GTCATGACCTGGGCCCCGCTGCTTCTCTCGGGCGAGGCCGAAGCAGCAGC
CGGAGTAGGAAACCGGGAAAGAAGCAAGGCTCCTCTGCAGCAGAGGCACC
AGAAGCAGCGAGACGGTGAGACCGCTCCTCTTGCAGCAGCAGCAGCAGCA
GCAGAAGGAGGAGGGGGGGGAAGAGGAGGAGGAAGAGAAGGAACAAACGA
CGAGATGAGAGAGGAGGGATCCAGCCACACCCTTGCGGCGGCCACCGCCA
CCGCCACTGCAACGGCAGCTGCAACCCCTCCGGCCCCCTTTTCCCCGTCG
AGGGAGGCCTTCCGGTCGAGAGTGCTGTCCGGGCTGTTGCTGCACCTCTG
CCCCCCTCCCGGGCACTTCGCGGACCTGTTCGGCTGCGGAGACGAGTTGC
GCCGGCGCATCCTCGGGATGCTGGACGCCCGGGATTTGGCTACGTTTGGA
ATGAAGCAGCGAGACGGTGAGACCGCTCCTCTTGCAGCAGCAGCAGCAGC
AGCAGAAGGAGGAGGGGGGGGAAGAGGAGGAGGAAGAGAAGGAACAAACG
ACGAGATGAGAGAGGAGGGATCCAGCCACACCCTTGCGGCGGCCACCGCC
ACCGCCACTGCAACGGCAGCTGCAACCCCTCCGGCCCCCTTTTCCCCGTC
GAGGGAGGCCTTCCGGTCGAGAGTGCTGTCCGGGCTGTTGCTGCACCTCT
GCCCCCCTCCCGGGCACTTCGCGGACCTGTTCGGCTGCGGAGACGAGTTG
CGCCGGCGCATCCTCGGGATGCTGGACGCCCGGGATTTGGCTACGTTTGG
AATGGCCAGCCGCTCCGCGGCCGTCAGCGCGGTGTCCAACTCTCTCTGGT
CCCTGCGCCTACAGGCCGATTTTTCCGAGAGCGAGCAGCGAGAAGGGGTC
GCCCTGGCCCTGCCGCCGCGCTCCTCCCTGGAACGGGCTTACCACCACGA
CCGGCAGCGGCGAAGCACAAGCGGCGGCGAGTGCGGCGACCATGTCCAAG
AGGGCAGGTTGTGGCGCTGCTACGGCGAGCTCGTGCGCGTTCGGAGGCGG
AGGGAGGCCAAGAGGCAGGCCTTGCTAGCCGAAGAGAGACACCGCGTCCT
GCAGCTGGTAGGCTTCATGGGCCGCCGATCCCGCGCCCCCTACCCCGCCG
GCCTGCCCCGCGGACCGTACCACACGCCGGGGCCCCCCGTGTTCCCGGGT
TACGACTGGGGGCCGGGGGTAGGAGACCCTGCGGATGTGTTGCCCCTATC
GCCACCCTCCTCGATCTGGGGCAGAGGAGGGTGGGCGCCGCCGCTGAGGG
GCTGGGGGCGAGGTGCGTGGCGGCGCTAGGCCAGCCGCTCCGCGGCCGTC
AGCGCGGTGTCCAACTCTCTCTGGTCCCTGCGCCTACAGGCCGATTTTTC
CGAGAGCGAGCAGCGAGAAGGGGTCGCCCTGGCCCTGCCGCCGCGCTCCT
CCCTGGAACGGGCTTACCACCACGACCGGCAGCGGCGAAGCACAAGCGGC
GGCGAGTGCGGCGACCATGTCCAAGAGGGCAGGTTGTGGCGCTGCTACGG
CGAGCTCGTGCGCGTTCGGAGGCGGAGGGAGGCCAAGAGGCAGGCCTTGC
TAGCCGAAGAGAGACACCGCGTCCTGCAGCTGGTAGGCTTCATGGGCCGC
CGATCCCGCGCCCCCTACCCCGCCGGCCTGCCCCGCGGACCGTACCACAC
GCCGGGGCCCCCCGTGTTCCCGGGTTACGACTGGGGGCCGGGGGTAGGAG
ACCCTGCGGATGTGTTGCCCCTATCGCCACCCTCCTCGATCTGGGGCAGA
GGAGGGTGGGCGCCGCCGCTGAGGGGCTGGGGGCGAGGTGCGTGGCGGCG
CTAG
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