prot_L-elsbetiae_contig886.17878.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig886.17878.1
Unique Name	prot_L-elsbetiae_contig886.17878.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	434

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig886.17878.1 vs. uniprot
Match: A0A6H5LM15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LM15_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 2.640e-52
Identity = 178/461 (38.61%), Postives = 220/461 (47.72%), Query Frame = 0

Query:   13 AEFDPHARVLRAVHQEFLDHGL-VLQQQPAECPNFGQSSAGAFPPLRYGDVGGGGRVIMVRALAIFDDLIVNATA--TSPRVAGDCDLDGE-IRRRIKLNVMTWAPLLL----SGEAEAAAGVGNRERSKAPLQQRHQKQ----------RDGETAPLAXXXXXXXXXXXXRXXXREGTNDEMREEGSSHTLAAXXXXXXXXXXXTPPAPFSP-------SREAFRSRVLSGLLLHLCPPPGHFADLFGCGDELRRRILGMLDARDLATFGMASRSAAVSAVSNSLWSLRLQADFSESEQREGVALALPPRSSLERAYHHDRQRRSTSGGECGDHV----------------QEGRLWRCYGELVRVRRRREAKRQALLAEERHRVLQLVGFMGRRSRA----PYPAGLPRGPYHTPGPPVFPGYDW---------GPGVGDPADVLPLSPPSSIWGRGGW 419
            AE D HARVL A+H E L +GL V  +  +      QS+AGAFPP+RY D GGGGRVI + ALA+FDDLIV+ TA  T  R  G     G+ + RR   +V  W+P LL    S + +  +G   + + +  +Q +  +Q          + G+  P A            R     G  D    E    TL + XXXXXXXXXX                +EAFRSRV+SGLLLHLCPPPGHFADL GCGDEL R +LGML ARDLA  G+  R+AAVS  ++ LW+  + ADFSE EQ     L L P                                           EG   R Y +L   R R+ A     L   R  VL++   +GR  RA    P+   LPRGP+HT G P  P Y           GPG+  P   LP SPPSS   R GW
Sbjct:   17 AEDDDHARVLLALHLELLAYGLNVHHRGDSPAVRMEQSNAGAFPPMRYVDGGGGGRVITIHALAMFDDLIVSGTAVATGGRDGGRDSRGGDAVHRRTTFSVSEWSPQLLLSSTSRDQQQQSGGVPKGQPQQQVQLKEGQQNAEGSSSGGTQSGDQCPTATKHPHLPE----RQASPPGDGDNDGRETGKGTLESSXXXXXXXXXXXXXXXXXXXXSLVGGGQEAFRSRVVSGLLLHLCPPPGHFADLLGCGDELLRHVLGMLGARDLAMVGLTGRAAAVSVAADCLWAKLVAADFSEREQH--AVLFLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEGASRRLYAKLSAARARQAAXXXXRL--RRSSVLEMAA-LGRLGRAWGLYPWAPYLPRGPFHTHGAPPSPEYGLLDSLGGDGTGPGLALP---LPPSPPSSSRWRSGW 465

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig886.17878.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig886.17878.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5LM15_9PHAE	2.640e-52	38.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 239..290

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig886	contig	L-elsbetiae_contig886:4802..7003 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig886.17878.1	mRNA_L-elsbetiae_contig886.17878.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig886 3939..7008 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig886.17878.1 ID=prot_L-elsbetiae_contig886.17878.1|Name=mRNA_L-elsbetiae_contig886.17878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=434bp
MAMNSNSLDEDAAEFDPHARVLRAVHQEFLDHGLVLQQQPAECPNFGQSS
AGAFPPLRYGDVGGGGRVIMVRALAIFDDLIVNATATSPRVAGDCDLDGE
IRRRIKLNVMTWAPLLLSGEAEAAAGVGNRERSKAPLQQRHQKQRDGETA
PLAAAAAAAEGGGGGRGGGREGTNDEMREEGSSHTLAAATATATATAAAT
PPAPFSPSREAFRSRVLSGLLLHLCPPPGHFADLFGCGDELRRRILGMLD
ARDLATFGMASRSAAVSAVSNSLWSLRLQADFSESEQREGVALALPPRSS
LERAYHHDRQRRSTSGGECGDHVQEGRLWRCYGELVRVRRRREAKRQALL
AEERHRVLQLVGFMGRRSRAPYPAGLPRGPYHTPGPPVFPGYDWGPGVGD
PADVLPLSPPSSIWGRGGWAPPLRGWGRGAWRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf