mRNA_L-elsbetiae_contig8780.17814.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8780.17814.1
Unique NamemRNA_L-elsbetiae_contig8780.17814.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8780.17814.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 9.440e-15
Identity = 78/179 (43.58%), Postives = 91/179 (50.84%), Query Frame = 1 
Query:  613 ADGERLPPVGRDFADQMSPSGLQAIKQISKLRDAQYLSA----KTQSSEEQXXXXXXXXXXXXXXXXXXSYAGSDGP---AGGRGQMWGRLGAAGEAYSLSXXXXXXXXXXXXXXXXXD----------------------AHESARATLSHLAAQVQAQEASRRSRAAGMDDGAGNGE 1062
            ADGERLPPV R+FA+QMSPS LQAIKQISKLRDAQYLS     K  +S+E+                   Y  SDG      GRGQ W R    G AYSLS              XXX                       A +S+RATL  LAA+VQA+E SRR+R AG+ DG  +G+
Sbjct:  418 ADGERLPPVSREFAEQMSPSALQAIKQISKLRDAQYLSGRGRDKPSTSDEEQEPVLPMGPTPELAPAAGGYESSDGGHTGGAGRGQGW-RSAHRGGAYSLSLNNNSSNPRSAGGAXXXXXXXXXXXXXXXXXXXXXXGQDAAKDSSRATLGQLAAKVQAEEKSRRTR-AGVGDGVRDGD 594
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8780.17814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG60_ECTSI9.440e-1543.58Histone deactylase of possible bacterial origin wi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8780contigL-elsbetiae_contig8780:4888..7041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue2.8e-16
Seed eggNOG ortholog2880.D8LG60
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG0724@1,KOG0724@2759,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1125
Cds size1122
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8780.17814.1prot_L-elsbetiae_contig8780.17814.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8780 4889..7041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816957.4433951-CDS-L-elsbetiae_contig8780:4888..51141622816957.4433951-CDS-L-elsbetiae_contig8780:4888..5114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8780 4889..5114 -
1691683940.8260567-CDS-L-elsbetiae_contig8780:4888..51141691683940.8260567-CDS-L-elsbetiae_contig8780:4888..5114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8780 4889..5114 -
1622816957.4590604-CDS-L-elsbetiae_contig8780:5973..61671622816957.4590604-CDS-L-elsbetiae_contig8780:5973..6167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8780 5974..6167 -
1691683940.8391786-CDS-L-elsbetiae_contig8780:5973..61671691683940.8391786-CDS-L-elsbetiae_contig8780:5973..6167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8780 5974..6167 -
1622816957.4718356-CDS-L-elsbetiae_contig8780:6339..70411622816957.4718356-CDS-L-elsbetiae_contig8780:6339..7041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8780 6340..7041 -
1691683940.8503716-CDS-L-elsbetiae_contig8780:6339..70411691683940.8503716-CDS-L-elsbetiae_contig8780:6339..7041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8780 6340..7041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8780.17814.1

>prot_L-elsbetiae_contig8780.17814.1 ID=prot_L-elsbetiae_contig8780.17814.1|Name=mRNA_L-elsbetiae_contig8780.17814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=374bp
GTAVGRGLSEAYGGVGQQRQQQQQQQQQQQMPPQVDYYRSMVQQQQQQQQ
QQQQLSNAGYPAAATGYKPAPPRSPYRMNPTANPTVVAAATAAARTAAPQ
QQQQAASNAAWGQNSVAATATGGHHGNGTTATGGSSQHLQQQQQQQQQST
AATAPGAPPGSGGAVSTGPLTISAPAAVTATPNPGGDGAAAAAVGGNTGS
VLAPADGERLPPVGRDFADQMSPSGLQAIKQISKLRDAQYLSAKTQSSEE
QEAAAAGASAAAAQAAAVASYAGSDGPAGGRGQMWGRLGAAGEAYSLSLS
SSNNNNNNNNSSNSQDAHESARATLSHLAAQVQAQEASRRSRAAGMDDGA
GNGEDHDGGEDEGSGGGINGDNDS
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mRNA from alignment at L-elsbetiae_contig8780:4888..7041-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8780.17814.1 ID=mRNA_L-elsbetiae_contig8780.17814.1|Name=mRNA_L-elsbetiae_contig8780.17814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2154bp|location=Sequence derived from alignment at L-elsbetiae_contig8780:4888..7041- (Laminarionema elsbetiae ELsaHSoW15)
GGGACAGCCGTCGGCCGTGGCTTGAGCGAAGCGTACGGTGGCGTGGGCCA
GCAGCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGATGCCGCCGC
AGGTGGACTACTACCGCTCGATGGTCCAGCAGCAGCAGCAGCAGCAACAG
CAACAGCAGCAGCTCAGTAACGCCGGCTACCCCGCGGCCGCGACCGGGTA
CAAACCAGCACCGCCGCGGTCGCCGTACCGGATGAACCCCACCGCCAACC
CCACCGTCGTCGCGGCCGCCACGGCCGCCGCACGCACCGCCGCCCCACAG
CAACAGCAGCAGGCTGCCTCCAACGCGGCGTGGGGGCAGAACTCCGTCGC
AGCCACCGCCACCGGTGGTCACCACGGAAACGGCACCACTGCCACGGGCG
GGAGCTCCCAGCACTTGCAGCAGCAGCAACAACAACAGCAGCAGTCCACC
GCCGCAACGGCGCCTGGTGCGCCGCCGGGCAGCGGCGGCGCCGTGTCGAC
AGGCCCGCTGACCATCTCCGCCCCCGCGGCCGTAACGGCGACTCCTAACC
CCGGTGGGGACGGAGCGGCGGCGGCGGCGGTGGGAGGGAATACAGGCTCG
GTGCTGGCACCGGCTGACGGGGAGCGACTACCGCCGGTTGGCAGGGACTT
CGCTGACCAGATGTCACCCTCGGGCCTGCAGGCAATCAAGCAGATTTCCA
AGGTATGTATCTACATCAAGCAGATTTCTAGACCATTACAGCAGTGCTTT
TCCTGTGGCGCATTCGTTTTTTAATTCGAACTTTCAAAAACTTGCACCTG
CCCCCTTTCTATCGCACCTTGCCTCACACGCCCCCCCCCCCCCTTCGCCT
GCTGCCTCTCGCTATTTGTGCAAGCTGCGGGACGCCCAATACCTTTCCGC
AAAGACCCAGTCTTCCGAGGAGCAAGAGGCTGCGGCGGCGGGGGCGTCGG
CGGCGGCAGCTCAAGCGGCGGCGGTGGCGAGCTACGCCGGCTCTGACGGG
CCCGCGGGTGGCCGGGGGCAAATGTGGGGGAGGTTGGGGGCTGCGGGCGA
GGCATACTCCCTCTCTCTGTGAGTTTGTTTTTGTTTGTCCCCGTGCTCCT
CAAGCTCGAGCTGCGCCGCGCTAAATTTATGTGCCGTTGTAGTTGGTGTT
GTTGTTGTTTGTTTGTTTGTTGCTTGCCTGCACCGCCGCACACATGCATT
TTTGCATACTCCCGACTTTTTTCTGGTCAAGCGATTCCGCAACTTTTTTT
GCTTTTCTCAGTAACAGCAAGCGTTCGTGTCTTTTGTCCCTGTCCAAAAT
GATGTAGGTGGGTGGGTGGGTGGGCATAGCGAAGACCACATGGCTGATTT
GGCAGCCGTAGAAACAGTATGCATATATTTAGAACGAGGCATCTGTGTGC
GAAACGGGACGAAACGAAAGTTGAAAAAGTGTATATACCGGCCGTCGCCT
CACTGGGCCCCCTCCCTCCCTGGCGTGGATGGTGGTGGCCTGCTCTTTCT
ATCTCAACATCGTGGTGCATAACTCGCTCGGTATGTACATATTTCTCGAA
TCAGATAATTATCGGTGAATATCGAATCAAAACTCGTTCTGATGTAAATA
AATATCGAATCAGCCGACCGAATTAATTAATCGGCTGTTGTTGATCAAGC
CGTACGGCTGCTGGGGAGACGGGGACGGCCAGGGCCGGCAGAGGACCGAC
CGGCCGATCCCCCATCGGGGGGAAATCCTGCATGGGCAAAGTCGGTAGTA
CGCAGCAGTGCGCATCCTTTTTCCGTTGCTTCTGTTCCCTGATTTTTTTT
TCTCTGTTTCGTGTGACATTGCATTTCCTCTCACCTCGCCTCCCCCCGCC
CCCCGCCCCCCGCCCCCTCGTTGCATATTTTTGCCGCAACGTCCAACCGT
CCCAAACAAACAAAAAAAAAATTGCAGCAGCAGCAGCAACAACAACAACA
ACAACAACAACAGCAGCAACAGCCAAGACGCCCACGAGTCTGCTCGCGCC
ACCCTCAGCCACCTGGCCGCCCAGGTGCAGGCGCAGGAGGCGAGCCGCCG
CAGCCGCGCGGCGGGCATGGACGACGGCGCCGGGAACGGGGAAGACCACG
ACGGCGGCGAGGACGAAGGAAGCGGCGGTGGCATCAACGGCGACAATGAC
AGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8780:4888..7041-

>mRNA_L-elsbetiae_contig8780.17814.1 ID=mRNA_L-elsbetiae_contig8780.17814.1|Name=mRNA_L-elsbetiae_contig8780.17814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2244bp|location=Sequence derived from alignment at L-elsbetiae_contig8780:4888..7041- (Laminarionema elsbetiae ELsaHSoW15)
GGGACAGCCGTCGGCCGTGGCTTGAGCGAAGCGTACGGTGGCGTGGGCCA
GCAGCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGATGCCGCCGC
AGGTGGACTACTACCGCTCGATGGTCCAGCAGCAGCAGCAGCAGCAACAG
CAACAGCAGCAGCTCAGTAACGCCGGCTACCCCGCGGCCGCGACCGGGTA
CAAACCAGCACCGCCGCGGTCGCCGTACCGGATGAACCCCACCGCCAACC
CCACCGTCGTCGCGGCCGCCACGGCCGCCGCACGCACCGCCGCCCCACAG
CAACAGCAGCAGGCTGCCTCCAACGCGGCGTGGGGGCAGAACTCCGTCGC
AGCCACCGCCACCGGTGGTCACCACGGAAACGGCACCACTGCCACGGGCG
GGAGCTCCCAGCACTTGCAGCAGCAGCAACAACAACAGCAGCAGTCCACC
GCCGCAACGGCGCCTGGTGCGCCGCCGGGCAGCGGCGGCGCCGTGTCGAC
AGGCCCGCTGACCATCTCCGCCCCCGCGGCCGTAACGGCGACTCCTAACC
CCGGTGGGGACGGAGCGGCGGCGGCGGCGGTGGGAGGGAATACAGGCTCG
GTGCTGGCACCGGCTGACGGGGAGCGACTACCGCCGGTTGGCAGGGACTT
CGCTGACCAGATGTCACCCTCGGGCCTGCAGGCAATCAAGCAGATTTCCA
AGGGGACAGCCGTCGGCCGTGGCTTGAGCGAAGCGTACGGTGGCGTGGGC
CAGCAGCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGATGCCGCC
GCAGGTGGACTACTACCGCTCGATGGTCCAGCAGCAGCAGCAGCAGCAAC
AGCAACAGCAGCAGCTCAGTAACGCCGGCTACCCCGCGGCCGCGACCGGG
TACAAACCAGCACCGCCGCGGTCGCCGTACCGGATGAACCCCACCGCCAA
CCCCACCGTCGTCGCGGCCGCCACGGCCGCCGCACGCACCGCCGCCCCAC
AGCAACAGCAGCAGGCTGCCTCCAACGCGGCGTGGGGGCAGAACTCCGTC
GCAGCCACCGCCACCGGTGGTCACCACGGAAACGGCACCACTGCCACGGG
CGGGAGCTCCCAGCACTTGCAGCAGCAGCAACAACAACAGCAGCAGTCCA
CCGCCGCAACGGCGCCTGGTGCGCCGCCGGGCAGCGGCGGCGCCGTGTCG
ACAGGCCCGCTGACCATCTCCGCCCCCGCGGCCGTAACGGCGACTCCTAA
CCCCGGTGGGGACGGAGCGGCGGCGGCGGCGGTGGGAGGGAATACAGGCT
CGGTGCTGGCACCGGCTGACGGGGAGCGACTACCGCCGGTTGGCAGGGAC
TTCGCTGACCAGATGTCACCCTCGGGCCTGCAGGCAATCAAGCAGATTTC
CAAGCTGCGGGACGCCCAATACCTTTCCGCAAAGACCCAGTCTTCCGAGG
AGCAAGAGGCTGCGGCGGCGGGGGCGTCGGCGGCGGCAGCTCAAGCGGCG
GCGGTGGCGAGCTACGCCGGCTCTGACGGGCCCGCGGGTGGCCGGGGGCA
AATGTGGGGGAGGTTGGGGGCTGCGGGCGAGGCATACTCCCTCTCTCTCT
GCGGGACGCCCAATACCTTTCCGCAAAGACCCAGTCTTCCGAGGAGCAAG
AGGCTGCGGCGGCGGGGGCGTCGGCGGCGGCAGCTCAAGCGGCGGCGGTG
GCGAGCTACGCCGGCTCTGACGGGCCCGCGGGTGGCCGGGGGCAAATGTG
GGGGAGGTTGGGGGCTGCGGGCGAGGCATACTCCCTCTCTCTCAGCAGCA
GCAACAACAACAACAACAACAACAACAGCAGCAACAGCCAAGACGCCCAC
GAGTCTGCTCGCGCCACCCTCAGCCACCTGGCCGCCCAGGTGCAGGCGCA
GGAGGCGAGCCGCCGCAGCCGCGCGGCGGGCATGGACGACGGCGCCGGGA
ACGGGGAAGACCACGACGGCGGCGAGGACGAAGGAAGCGGCGGTGGCATC
AACGGCGACAATGACAGCCAGCAGCAGCAACAACAACAACAACAACAACA
ACAGCAGCAACAGCCAAGACGCCCACGAGTCTGCTCGCGCCACCCTCAGC
CACCTGGCCGCCCAGGTGCAGGCGCAGGAGGCGAGCCGCCGCAGCCGCGC
GGCGGGCATGGACGACGGCGCCGGGAACGGGGAAGACCACGACGGCGGCG
AGGACGAAGGAAGCGGCGGTGGCATCAACGGCGACAATGACAGC
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