mRNA_L-elsbetiae_contig8776.17810.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8776.17810.1
Unique NamemRNA_L-elsbetiae_contig8776.17810.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8776.17810.1 vs. uniprot
Match: A0A6H5JA15_9PHAE (BEACH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA15_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 3.760e-119
Identity = 211/359 (58.77%), Postives = 230/359 (64.07%), Query Frame = 1
Query:    1 VRLGSHLFAFHAESRVLFSGGYWDSTFRVTSLDTGRLVVSIARHRDVVTSLSLADGGVGCRRLVTASRDTTMMVWRVDDNGG-----VSSSSLLHVLYGHDTPVTCVCARASLDAIVSSGEDGTLVVHTLWGGEYVRTITPQ------------------------------------------------RKVQVVG-------------GSSLPPPWPPVEWVGLSTAGIVVAYSPEDAALRSYTINGHAMGATEDARVEAGPLRAFAFSEDGSVLLSGGHDRVVTLRWAHSLA----------------------------------FGCAIRSLALTAGERHLLVGLEDGTLGVLA 777
            V LGSHLFA  AES +LFSGG+WDS+FR T+LDTGRLVVSIARHRDVVTSLSLADGG G RRLVTASRDTT+MVWRV+D  G     VS SSLLHVLYGHDTPVTCVCARA LDAIVSSGEDGT+VVHTLWGGEYVRTITPQ                                                R  +  G             GS+LP PW  VEWVGLS+AG VVAYSP DA LRSYT+NGH +GA +  + EAGPLRAF FSEDG+VLLSGGHDRVVTLRWA+SLA                                  F  A+R+LALTAGERHLLVGL+DGTLGVLA
Sbjct:  478 VGLGSHLFAVLAESYLLFSGGHWDSSFRATALDTGRLVVSIARHRDVVTSLSLADGGKGYRRLVTASRDTTLMVWRVEDTAGERAPPVSPSSLLHVLYGHDTPVTCVCARADLDAIVSSGEDGTVVVHTLWGGEYVRTITPQGDASPAEVTALDASGRRLGSLVESAENGGHGDGCSKGVQDNEEEGAASRSSRCPGVDGATATASRAFRGSNLPSPWASVEWVGLSSAGYVVAYSPADATLRSYTVNGHPLGAVQVMKAEAGPLRAFVFSEDGTVLLSGGHDRVVTLRWAYSLALADDGSRKGCGEAVLDGAGPPLAGVPAASAGVPKFASAVRALALTAGERHLLVGLDDGTLGVLA 836          
BLAST of mRNA_L-elsbetiae_contig8776.17810.1 vs. uniprot
Match: D8LL16_ECTSI (Similar to neurobeachin like 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL16_ECTSI)

HSP 1 Score: 378 bits (971), Expect = 5.880e-117
Identity = 212/357 (59.38%), Postives = 229/357 (64.15%), Query Frame = 1
Query:    1 VRLGSHLFAFHAESRVLFSGGYWDSTFRVTSLDTGRLVVSIARHRDVVTSLSLADGGVGCRRLVTASRDTTMMVWRVDDNGG-----VSSSSLLHVLYGHDTPVTCVCARASLDAIVSSGEDGTLVVHTLWGGEYVRTITPQ-----------------------------------------------------------RKVQVVGGSSLPPPWPPVEWVGLSTAGIVVAYSPEDAALRSYTINGHAMGATEDARVEAGPLRAFAFSEDGSVLLSGGHDRVVTLRWAHSLA----------------------------------FGCAIRSLALTAGERHLLVGLEDGTLGVLA 777
            V LGSHLFA  AES +LFSGG+WDS+FR T+LDTGRLVVSIARHRDVVTSLSLADGG GCRRLVTASRDTT+MVWRV+D  G     VS SSLLHVLYGHDTPVTCVCARA LDAIVSSGEDGT+VVHTLWGGEYVRTITPQ                                                              +V  G +LPPPW  VEWVGLS AG VVAYSP DA LRSYT+NGH +GA +  + EAGPLRAF FSEDG+VLLSGGHDRVVTLRWA+SLA                                  F  A+R+LALTAGERHLLVGLEDGTLGVLA
Sbjct: 4096 VGLGSHLFAILAESYLLFSGGHWDSSFRATALDTGRLVVSIARHRDVVTSLSLADGGKGCRRLVTASRDTTLMVWRVEDTAGERAPPVSPSSLLHVLYGHDTPVTCVCARADLDAIVSSGEDGTVVVHTLWGGEYVRTITPQGDASPTELTALDASGLGSLVESAENGRHGDGCSNRVRDDEEEGTTSRSSRCPGVDGAAATPTKVFRGRNLPPPWASVEWVGLSAAGYVVAYSPADATLRSYTVNGHPLGAVQVTKAEAGPLRAFVFSEDGTVLLSGGHDRVVTLRWAYSLALADDGSRKGCGLAVLDGAGPPLAGVPAASAGVPKFASAVRALALTAGERHLLVGLEDGTLGVLA 4452          
BLAST of mRNA_L-elsbetiae_contig8776.17810.1 vs. uniprot
Match: A0A812SB97_SYMMI (Sel-2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SB97_SYMMI)

HSP 1 Score: 176 bits (445), Expect = 1.920e-46
Identity = 109/292 (37.33%), Postives = 155/292 (53.08%), Query Frame = 1
Query:    7 LGSHLFAFHAESRVLFSGGYWDSTFRVTSLDTGRLVVSIARHRDVVTSLSLADGGVGCRRLVTASRDTTMMVWRVDDNGGVSSSSL-LHVLYGHDTPVTCVCARASLDAIVSSGEDGTLVVHTLWGGEYVRTITPQRKVQVVGGSSLPPPWPP--------------------VEWVGLSTAGIVVAYSPEDAALRSYTINGHAMGATEDARVEAGPLRAFAFSEDGSVLLSGGHDRVVTLRWAHSLA-------------------------FGCAIRSLALTAGERHLLV 744
            + +HLFA   +SR+LFS G+WD +F+V+S+DTGRL+ SI++HRDVVT + +A    G   LVT SRD T+++W ++       +   LHVLYGHD  V CV     LD +VS  +DGT++VH L  G Y+R+IT +       G+ +  P  P                    V  VG+S AG + AYS +D+AL ++TINGH     +  ++    L AF  SED  VL++GG   ++ +RW HSL                          F   IRS+ LT  ERH++V
Sbjct:  784 INTHLFALCPDSRLLFSCGHWDYSFKVSSIDTGRLLQSISQHRDVVTCIDIATD-FGDTWLVTGSRDCTLIIWEINPTADKPITQRPLHVLYGHDDAVNCVDVCVELDVVVSGSDDGTIIVHKLREGIYIRSITVEP---TPSGTVMTSPSEPSMATKSEKSVNRSLLISKRRVHNVGVSVAGFIYAYSNDDSALYTFTINGH----PQARKITGERLHAFRLSEDNRVLITGGERGLIVMRWVHSLELSNVGSKWEFQSVLDGSNAEEYQKPFNSPIRSIYLTQQERHMIV 1067          
BLAST of mRNA_L-elsbetiae_contig8776.17810.1 vs. uniprot
Match: LVSC_DICDI (BEACH domain-containing protein lvsC n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=LVSC_DICDI)

HSP 1 Score: 163 bits (413), Expect = 4.210e-42
Identity = 95/270 (35.19%), Postives = 149/270 (55.19%), Query Frame = 1
Query:    1 VRLGSHLFAFHAESRVLFSGGYWDSTFRVTSLDTGRLVVSIARHRDVVTSLSLADGGVGCRRLVTASRDTTMMVWRV---DDNGGVSSSSLL-HVLYGHDTPVTCVCARASLDAIVSSGEDGTLVVHTLWGGEYVRTITPQRKVQVVGGSSLPPPWPPVEWVGLSTAGIVVAYSPEDAALRSYTINGHAMGATEDARVEAGPLRAFAFSEDGSVLLSGGHDRVVTLRWA-------HSLAFGCAIRSLALTAGERHLLVGLEDGTLGVLA 777
            V +  + FA  ++ R + S  +WD++F+++ +D+ +L+ S+ +H+D VT LSLA  G   + L+T S+DTT+MVWR+   + +G    + +  H+LYGHD  +TCV     LD  +S  +DGT ++H L  GEYVR+I   R+              P+  + +S  G +V YS  D  +  Y+ING  +  T D       L +   S+D   L++GG   VV +R         H L FG  I SLA+ + ++HL+VGLEDG L ++A
Sbjct: 2217 VTISPNCFAITSDGRYVISCAHWDNSFKLSFVDSAKLIQSVVKHKDTVTCLSLASDG---QTLITGSKDTTVMVWRIATTNKSGAPKFNDVPDHILYGHDDEITCVDVNVGLDISISGSKDGTCIIHNLKHGEYVRSIYLPRQS-------------PISLIAISNQGYIVIYSQADLMIYLYSINGGLLK-TVDTHER---LHSIIISKDSEYLITGGERGVVVIRTLFNLKPTNHKLVFGTPIHSLAMASDQKHLMVGLEDGRLLIIA 2466          
BLAST of mRNA_L-elsbetiae_contig8776.17810.1 vs. uniprot
Match: D3BT75_POLPP (BEACH domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BT75_POLPP)

HSP 1 Score: 160 bits (405), Expect = 5.040e-41
Identity = 93/268 (34.70%), Postives = 143/268 (53.36%), Query Frame = 1
Query:    1 VRLGSHLFAFHAESRVLFSGGYWDSTFRVTSLDTGRLVVSIARHRDVVTSLSLADGGVGCRRLVTASRDTTMMVWRVDDNGGVS---SSSLLHVLYGHDTPVTCVCARASLDAIVSSGEDGTLVVHTLWGGEYVRTITPQRKVQVVGGSSLPPPWPPVEWVGLSTAGIVVAYSPEDAALRSYTINGHAMGATEDARVEAGPLRAFAFSEDGSVLLSGGHDRVVTLR------WAHSLAFGCAIRSLALTAGERHLLVGLEDGTLGVLA 777
            V +  + FA   + R + S G+WD++F+++  D  +L+ S+ +H+D+VT L+ +  G   + L+T SRDTT+MVW +  +        +   H+LYGHD  VTCV     LD  +S  +DGT ++H L  GEYVRTI+  ++              PV    +S  G +V YS  D  +  Y+ING  + + +        L +   S D   L+SGG    V LR      +AH L+F   I SLA+ + ++HL+VGLEDG L ++A
Sbjct: 3094 VTISQNCFAVTNDGRYVISCGHWDNSFKLSFTDNAKLIQSVIKHKDIVTCLAWSSDG---QTLITGSRDTTLMVWNLSSHKSAVPKFENVPTHILYGHDDEVTCVDLNIELDICISGSKDGTCIIHNLRRGEYVRTISLPKQS-------------PVSKCSISNQGHIVIYSQADLVIYLYSINGQLLKSVDTHE----RLHSIIISRDSEYLISGGDKGTVVLRTLYNLKFAHKLSFDTPINSLAMGSDQKHLMVGLEDGRLLIIA 3341          
BLAST of mRNA_L-elsbetiae_contig8776.17810.1 vs. uniprot
Match: UPI0006451263 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006451263)

HSP 1 Score: 160 bits (404), Expect = 6.830e-41
Identity = 93/270 (34.44%), Postives = 147/270 (54.44%), Query Frame = 1
Query:    1 VRLGSHLFAFHAESRVLFSGGYWDSTFRVTSLDTGRLVVSIARHRDVVTSLSLADGGVGCRRLVTASRDTTMMVWRVDDNGGVSSSSLL-----HVLYGHDTPVTCVCARASLDAIVSSGEDGTLVVHTLWGGEYVRTITPQRKVQVVGGSSLPPPWPPVEWVGLSTAGIVVAYSPEDAALRSYTINGHAMGATEDARVEAGPLRAFAFSEDGSVLLSGGHDRVVTLR------WAHSLAFGCAIRSLALTAGERHLLVGLEDGTLGVLA 777
            V +    FA   + R   S G+WD++F++   D+ + + S+ +H+D+VT ++ +D G   + L+T SRDTT+M+W +  + G SS+S       H+LYGHD  +TCV     LD  +S  +DGT ++H L  GEYVR+I   ++  V                 +S  G +V YS +D  +  Y+ING  + + E      G L +   S+D   L++GG    V +R      +A+ L+F  AI SLA++  +RHL+VGLEDG L ++A
Sbjct: 2864 VVINQKCFAITNDGRYTISCGHWDNSFKLAHTDSAKPIQSVVKHKDIVTCVAWSDEG---QTLITGSRDTTLMLWNLIAHRGSSSTSRFDNVPTHILYGHDDEITCVDLNVELDICLSGSKDGTCIIHNLGRGEYVRSICLPKQSSV-------------NQCIISNQGHIVIYSQDDLMIYLYSINGQLLSSVET----HGKLNSMIVSKDSEYLITGGDKGTVVIRTLYNLKFAYKLSFDSAIHSLAMSNDQRHLMVGLEDGRLLIIA 3113          
BLAST of mRNA_L-elsbetiae_contig8776.17810.1 vs. uniprot
Match: A0A482SUG5_9ARCH (DUF4704 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUG5_9ARCH)

HSP 1 Score: 158 bits (399), Expect = 3.210e-40
Identity = 112/327 (34.25%), Postives = 157/327 (48.01%), Query Frame = 1
Query:    7 LGSHLFAFHAESRVLFSGGYWDSTFRVTSLDTGRLVVSIARHRDVVTSLSLADGGVGCRRLVTASRDTTMMVWRVDDNGGVSSS-SLLHVLYGHDTPVTCVCARASLDAIVSSGEDGTLVVHTLWGGEYVRTI----------------TPQRKVQVVGGSSLPPP--------------------WPP---------VEWVGLSTAGIVVAYSPEDAALRSYTINGHAMGATEDARVEAGPLRAFAFSEDGSVLLSGGHDRVVTLRWAHSLA------------------------FGCAIRSLALTAGERHLLVGLEDGTLGVLA 777
            L +HLF +    +++FS G+WD+ F+ T+ DTG+LV SI+ HR+VVT +S A        L T S+D T+ +W V +          LH LYGHD  V CV  +  LD +VS  +DGT+++H+L  G Y+R+I                T  R++ +      PP                     + P         V  + ++  G +VAYS +   L SYT+NG  +     AR     L A   SEDG  +L+GG   +V +RW ++LA                        FGCAIRSLALTA ERHLLVGL+ G L V+A
Sbjct: 3439 LSAHLFCYLPAMKLVFSCGHWDNAFKATAADTGKLVQSISHHREVVTCISCATD-YNKHYLATGSKDCTVTIWEVVERESEPVHIPPLHTLYGHDDAVNCVVIQTELDLVVSGSDDGTIMIHSLREGIYIRSIVLGAMSDSLPASPSFGTLSRRMTIT--QETPPSAGSSPSGTRHLHQHQLQQHHYQPQHLERVVCRVHLLAVTRDGNIVAYSNDGFMLGSYTLNGRCLRLLP-ARER---LHALCLSEDGRTVLTGGERGLVVIRWVYNLAIANNGARRGLEAVCDGSNAPDFEPFGCAIRSLALTANERHLLVGLDSGDLRVVA 3758          
BLAST of mRNA_L-elsbetiae_contig8776.17810.1 vs. uniprot
Match: A0A8J4UYA2_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UYA2_9MYCE)

HSP 1 Score: 157 bits (397), Expect = 5.920e-40
Identity = 91/273 (33.33%), Postives = 147/273 (53.85%), Query Frame = 1
Query:    1 VRLGSHLFAFHAESRVLFSGGYWDSTFRVTSLDTGRLVVSIARHRDVVTSLSLADGGVGCRRLVTASRDTTMMVWRVDDNGGVSSSSLL----HVLYGHDTPVTCVCARASLDAIVSSGEDGTLVVHTLWGGEYVRTITPQRKVQVVGGSSLPPPWPPVEWVGLSTAGIVVAYSPEDAALRSYTINGHAMGATEDARVEAGPLRAFAFSEDGSV---LLSGGHDRVVTLRWA-------HSLAFGCAIRSLALTAGERHLLVGLEDGTLGVLA 777
            V +  + FA   + R + S  +WD++F+++ +D+ +L+ S+ +H+D VT L++A  G   + L+T S+DTT+MVW++ +N    +        H+LYGHD  +TCV     LD  +S  +DGT ++H L  GEYVR+I   R+              PV  + ++  G +V YS  D  +  YTING  + + +        L +   S+D +    L++GG    V +R         H L FG  I SLA+++ +RHL+VGLEDG L ++A
Sbjct: 3165 VTISPNCFAITNDGRYVISCAHWDNSFKLSFVDSAKLIQSVVKHKDTVTCLAMASDG---QTLITGSKDTTVMVWKIHNNNKSGAPRFADVPDHILYGHDDEITCVDINVELDISISGSKDGTCIIHNLKHGEYVRSIYLPRQS-------------PVSLIAITYQGYIVIYSQADLMIYLYTINGQLLKSIDTHE----RLHSMIVSKDNTYPEYLITGGERGTVVIRTLYNLRPTNHKLMFGTPIHSLAMSSDQRHLMVGLEDGRLLIIA 3417          
BLAST of mRNA_L-elsbetiae_contig8776.17810.1 vs. uniprot
Match: F4PIN9_CAVFA (BEACH domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PIN9_CAVFA)

HSP 1 Score: 156 bits (395), Expect = 1.100e-39
Identity = 91/268 (33.96%), Postives = 144/268 (53.73%), Query Frame = 1
Query:    1 VRLGSHLFAFHAESRVLFSGGYWDSTFRVTSLDTGRLVVSIARHRDVVTSLSLADGGVGCRRLVTASRDTTMMVWRVDDNGGVS---SSSLLHVLYGHDTPVTCVCARASLDAIVSSGEDGTLVVHTLWGGEYVRTITPQRKVQVVGGSSLPPPWPPVEWVGLSTAGIVVAYSPEDAALRSYTINGHAMGATEDARVEAGPLRAFAFSEDGSVLLSGGHDRVVTLR------WAHSLAFGCAIRSLALTAGERHLLVGLEDGTLGVLA 777
            V +    FA  ++ R + S G+WD++F+++ +D+ +L+ S+ +H+D+VT L+ A      + L+T SRDTT+MVW +  +   S        H+LYGHD  +TCV     LD  +S  +DGT ++H L  GEYVR+I   ++              PV    +S  G +V YS  D  +  Y+ING  + + E        L +   ++D   L++GG    V LR      +AH L+F   I SLA+ + ++HL+VGLEDG L ++A
Sbjct: 3297 VTISQSCFAVTSDGRYVISCGHWDNSFKLSYVDSAKLIQSVVKHKDIVTCLAWASNS---QTLITGSRDTTLMVWNLQTHKSGSPRFGDVPAHILYGHDDEITCVDVNVELDICLSGSKDGTCIIHNLRHGEYVRSIILPKQA-------------PVTICAISNHGHIVIYSQADFVIYLYSINGQFLQSVETHE----RLNSIIITKDSEYLITGGDKGTVILRTLYNLKFAHKLSFDQPIHSLAMGSDQKHLMVGLEDGRLIIIA 3544          
BLAST of mRNA_L-elsbetiae_contig8776.17810.1 vs. uniprot
Match: A0A151Z3T4_9MYCE (BEACH domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z3T4_9MYCE)

HSP 1 Score: 149 bits (376), Expect = 3.770e-37
Identity = 88/268 (32.84%), Postives = 141/268 (52.61%), Query Frame = 1
Query:    1 VRLGSHLFAFHAESRVLFSGGYWDSTFRVTSLDTGRLVVSIARHRDVVTSLSLADGGVGCRRLVTASRDTTMMVWRVDD--NGGVSSSSL-LHVLYGHDTPVTCVCARASLDAIVSSGEDGTLVVHTLWGGEYVRTITPQRKVQVVGGSSLPPPWPPVEWVGLSTAGIVVAYSPEDAALRSYTINGHAMGATEDARVEAGPLRAFAFSEDGSVLLSGGHDRVVTLRWA-------HSLAFGCAIRSLALTAGERHLLVGLEDGTLGVL 774
            V +  + FA   + R + S G+WD++F+++ +D+ +L+ S+ +H+D VT L+LA      + LVT S+DTT+MVW++    NG      +  H+LYGHD  +TCV     LD  +S  +DGT ++H +  GEYVR+I               P   P+  V +S  G +V YS  D  +  Y+ING  + + E        L +   ++D   L++GG    V +R         H L F   + SL +++ +RHL+VGL DG L ++
Sbjct: 3073 VTISQNCFAITNDGRYVISCGHWDNSFKLSHVDSAKLIQSVVKHKDSVTCLALASDD---QILVTGSKDTTVMVWKITQHKNGTPRFDDVPSHILYGHDDEITCVDVNVELDISISGSKDGTCIIHNVRHGEYVRSI-------------FLPKQSPISMVSISNQGYIVIYSQSDLMIYLYSINGRLLNSIET----HDRLYSMIITKDSEYLITGGERGNVVIRSLYNLKNTNHKLEFKSPVHSLTMSSDQRHLMVGLSDGRLLII 3320          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8776.17810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA15_9PHAE3.760e-11958.77BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LL16_ECTSI5.880e-11759.38Similar to neurobeachin like 1 n=1 Tax=Ectocarpus ... [more]
A0A812SB97_SYMMI1.920e-4637.33Sel-2 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
LVSC_DICDI4.210e-4235.19BEACH domain-containing protein lvsC n=1 Tax=Dicty... [more]
D3BT75_POLPP5.040e-4134.70BEACH domain-containing protein n=1 Tax=Polysphond... [more]
UPI00064512636.830e-4134.44hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A482SUG5_9ARCH3.210e-4034.25DUF4704 domain-containing protein n=1 Tax=archaeon... [more]
A0A8J4UYA2_9MYCE5.920e-4033.33Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
F4PIN9_CAVFA1.100e-3933.96BEACH domain-containing protein n=1 Tax=Cavenderia... [more]
A0A151Z3T4_9MYCE3.770e-3732.84BEACH domain-containing protein n=1 Tax=Tieghemost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8776contigL-elsbetiae_contig8776:1439..2485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score381.3
Seed ortholog evalue3.5e-103
Seed eggNOG ortholog2880.D8LL16
Hectar predicted targeting categoryother localisation
EggNOG free text desc.platelet formation
EggNOG OGsKOG1787@1,KOG1787@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size777
Cds size777
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8776.17810.1prot_L-elsbetiae_contig8776.17810.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8776 1439..2485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816957.007779-CDS-L-elsbetiae_contig8776:1438..18651622816957.007779-CDS-L-elsbetiae_contig8776:1438..1865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8776 1439..1865 +
1691683940.4622557-CDS-L-elsbetiae_contig8776:1438..18651691683940.4622557-CDS-L-elsbetiae_contig8776:1438..1865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8776 1439..1865 +
1622816957.0184212-CDS-L-elsbetiae_contig8776:2033..22931622816957.0184212-CDS-L-elsbetiae_contig8776:2033..2293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8776 2034..2293 +
1691683940.474005-CDS-L-elsbetiae_contig8776:2033..22931691683940.474005-CDS-L-elsbetiae_contig8776:2033..2293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8776 2034..2293 +
1622816957.0317082-CDS-L-elsbetiae_contig8776:2395..24851622816957.0317082-CDS-L-elsbetiae_contig8776:2395..2485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8776 2396..2485 +
1691683940.4853878-CDS-L-elsbetiae_contig8776:2395..24851691683940.4853878-CDS-L-elsbetiae_contig8776:2395..2485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8776 2396..2485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8776.17810.1

>prot_L-elsbetiae_contig8776.17810.1 ID=prot_L-elsbetiae_contig8776.17810.1|Name=mRNA_L-elsbetiae_contig8776.17810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=259bp
VRLGSHLFAFHAESRVLFSGGYWDSTFRVTSLDTGRLVVSIARHRDVVTS
LSLADGGVGCRRLVTASRDTTMMVWRVDDNGGVSSSSLLHVLYGHDTPVT
CVCARASLDAIVSSGEDGTLVVHTLWGGEYVRTITPQRKVQVVGGSSLPP
PWPPVEWVGLSTAGIVVAYSPEDAALRSYTINGHAMGATEDARVEAGPLR
AFAFSEDGSVLLSGGHDRVVTLRWAHSLAFGCAIRSLALTAGERHLLVGL
EDGTLGVLA
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mRNA from alignment at L-elsbetiae_contig8776:1439..2485+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8776.17810.1 ID=mRNA_L-elsbetiae_contig8776.17810.1|Name=mRNA_L-elsbetiae_contig8776.17810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1047bp|location=Sequence derived from alignment at L-elsbetiae_contig8776:1439..2485+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCGGCTGGGGTCGCACTTGTTTGCCTTCCACGCTGAGTCTCGCGTGCT GTTTAGTGGCGGATACTGGGACTCGACGTTTCGAGTGACATCGCTCGACA CGGGGCGACTTGTCGTCTCGATTGCCCGCCACCGCGATGTCGTGACCAGC CTGTCCTTGGCTGACGGAGGTGTCGGGTGTCGCCGTTTGGTGACGGCGTC GCGAGACACCACCATGATGGTGTGGAGAGTAGATGACAATGGCGGCGTGT CATCGTCTTCGCTCCTTCACGTGCTCTACGGGCACGACACTCCAGTCACG TGCGTCTGCGCCAGGGCTTCGCTGGACGCGATCGTAAGCTCCGGCGAGGA TGGCACCCTTGTGGTGCACACTCTATGGGGGGGAGAGTACGTGCGGACGA TAACTCCGCAGAGAAAGGTTCAGGTTGGTGCGGCTACACCGCCCGACGAG CCGACCAGAGTTAAACCCATGGAGGTCGGCGGGAAAGAAGGCGGGTTCGA CGAGATGGCCGCAGATACGGACGAAAAACGCCGGGGGGGATGCCTGGCGG GGGCAGTGGAGGCGGACCCAGCGGTGACCACCCCGAAACCCCTAGTGGGG GGCAGCAGTCTGCCGCCCCCGTGGCCCCCGGTGGAATGGGTCGGGCTGTC AACTGCTGGGATTGTCGTCGCATACTCGCCAGAAGACGCGGCACTGCGGT CGTACACTATCAACGGGCACGCGATGGGGGCGACGGAGGATGCAAGAGTG GAGGCTGGTCCGCTGCGCGCGTTCGCGTTCTCCGAGGACGGCTCAGTCCT GCTGTCCGGAGGCCACGATCGCGTCGTGACGCTTCGCTGGGCGCATAGCC TTGCTGTGGCGAACGACGGCGGCCGGAAAGGATGCGGGGAAGCCGTGCTG GACGGCTCTGGACCCCCGTTGGCTGGAGTGCCCGCCGCGAGCGCTGGTGT CAAGAAGTTTGGGTGTGCGATACGGTCTCTGGCACTGACTGCTGGGGAAC GGCACTTGCTGGTGGGGCTAGAGGATGGGACGCTGGGGGTTTTGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8776:1439..2485+

>mRNA_L-elsbetiae_contig8776.17810.1 ID=mRNA_L-elsbetiae_contig8776.17810.1|Name=mRNA_L-elsbetiae_contig8776.17810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1554bp|location=Sequence derived from alignment at L-elsbetiae_contig8776:1439..2485+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCGGCTGGGGTCGCACTTGTTTGCCTTCCACGCTGAGTCTCGCGTGCT
GTTTAGTGGCGGATACTGGGACTCGACGTTTCGAGTGACATCGCTCGACA
CGGGGCGACTTGTCGTCTCGATTGCCCGCCACCGCGATGTCGTGACCAGC
CTGTCCTTGGCTGACGGAGGTGTCGGGTGTCGCCGTTTGGTGACGGCGTC
GCGAGACACCACCATGATGGTGTGGAGAGTAGATGACAATGGCGGCGTGT
CATCGTCTTCGCTCCTTCACGTGCTCTACGGGCACGACACTCCAGTCACG
TGCGTCTGCGCCAGGGCTTCGCTGGACGCGATCGTAAGCTCCGGCGAGGA
TGGCACCCTTGTGGTGCACACTCTATGGGGGGGAGAGTACGTGCGGACGA
TAACTCCGCAGAGAAAGGTTCAGGTTGGTTCGGCTGGGGTCGCACTTGTT
TGCCTTCCACGCTGAGTCTCGCGTGCTGTTTAGTGGCGGATACTGGGACT
CGACGTTTCGAGTGACATCGCTCGACACGGGGCGACTTGTCGTCTCGATT
GCCCGCCACCGCGATGTCGTGACCAGCCTGTCCTTGGCTGACGGAGGTGT
CGGGTGTCGCCGTTTGGTGACGGCGTCGCGAGACACCACCATGATGGTGT
GGAGAGTAGATGACAATGGCGGCGTGTCATCGTCTTCGCTCCTTCACGTG
CTCTACGGGCACGACACTCCAGTCACGTGCGTCTGCGCCAGGGCTTCGCT
GGACGCGATCGTAAGCTCCGGCGAGGATGGCACCCTTGTGGTGCACACTC
TATGGGGGGGAGAGTACGTGCGGACGATAACTCCGCAGAGAAAGGTTCAG
GTTGTGGGGGGCAGCAGTCTGCCGCCCCCGTGGCCCCCGGTGGAATGGGT
CGGGCTGTCAACTGCTGGGATTGTCGTCGCATACTCGCCAGAAGACGCGG
CACTGCGGTCGTACACTATCAACGGGCACGCGATGGGGGCGACGGAGGAT
GCAAGAGTGGAGGCTGGTCCGCTGCGCGCGTTCGCGTTCTCCGAGGACGG
CTCAGTCCTGCTGTCCGGAGGCCACGATCGCGTCGTGACGCTTCGCTGGG
CGCATAGCCTTGCTTGGGGGGCAGCAGTCTGCCGCCCCCGTGGCCCCCGG
TGGAATGGGTCGGGCTGTCAACTGCTGGGATTGTCGTCGCATACTCGCCA
GAAGACGCGGCACTGCGGTCGTACACTATCAACGGGCACGCGATGGGGGC
GACGGAGGATGCAAGAGTGGAGGCTGGTCCGCTGCGCGCGTTCGCGTTCT
CCGAGGACGGCTCAGTCCTGCTGTCCGGAGGCCACGATCGCGTCGTGACG
CTTCGCTGGGCGCATAGCCTTGCTTTTGGGTGTGCGATACGGTCTCTGGC
ACTGACTGCTGGGGAACGGCACTTGCTGGTGGGGCTAGAGGATGGGACGC
TGGGGGTTTTGGCGTTTGGGTGTGCGATACGGTCTCTGGCACTGACTGCT
GGGGAACGGCACTTGCTGGTGGGGCTAGAGGATGGGACGCTGGGGGTTTT
GGCG
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