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Homology
BLAST of mRNA_L-elsbetiae_contig8642.17678.1 vs. uniprot
Match: A0A6H5JK53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK53_9PHAE) HSP 1 Score: 105 bits (262), Expect = 7.510e-21 Identity = 108/336 (32.14%), Postives = 150/336 (44.64%), Query Frame = 2
Query: 404 QAGADLTPRDRAGTTPLLAALIIRYDGGTPGLDMVQALLRRGANPLLANDQRLAPMNQAAGHGDTGMVDMILSAAPAALNLGTGKQGTTAMGITVDSRVLSPHDKKRTVRHLLSLGATDRDVPENVASTLVGAVRRGDNSMVRLLLDAARQEVGDFWGADAVYLAIIVAAGNGLAKILEMLITAEGEERQQRWTRVRV-SGVPAVFRRGCEPLCLDDRRPSRGRRGRAGPRRRGLLAPS----SMRQQGSQPKTSTQTTARHPPSGGRWRVRPLSGPVPGRGRLR*YLHL*PVVLVLLLLPGGGLRKSSTASTGVRIFRPKDKRFFTTRFGRYSRK 1396
+AGAD RD AG TPL+ + G + + L + GA+P + N ++ M+ AAG G+ ++ +IL+ P+ALN+ K G T MGI + ++R V HLLS GA+D V E A+ L A G MVR++L+ VG G A+ +I VA AKILEML++AEGEE +++W R+ G P + S G R P G LA ++R + R G +R R P G + L R S GV+IFRP RFF TRF RY+ K
Sbjct: 96 EAGADFNSRDGAGETPLMLTAL-----ADTGALLARELFKVGASPFVKNADGMSAMHVAAGLGNLEVMTVILTNTPSALNVLDNK-GFTPMGIA------ALRGQRRAVFHLLSAGASDLGVDEQNAAIL-WACDGGHPRMVRMMLEHGINRVG---GLGAIPNSIGVAVQGRQAKILEMLVSAEGEENRRKWAECRLRDGTPLHLAAAWVSVRAIHVLLSAGARETL-PNGYGKLASEEVGIALRPPARRSPRKEAAVVRMLQRGPAYRARSYGWPTLDGGNGTSDVTL-------------SSRTRGANSFGVQIFRPTGTRFFATRFARYANK 401
BLAST of mRNA_L-elsbetiae_contig8642.17678.1 vs. uniprot
Match: D7G4M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M4_ECTSI) HSP 1 Score: 102 bits (254), Expect = 1.390e-19 Identity = 110/341 (32.26%), Postives = 154/341 (45.16%), Query Frame = 2
Query: 404 QAGADLTPRDRAGTTPLLAALIIRYDGGTPGLDMVQALLRRGANPLLANDQRLAPMNQAAGHGDTGMVDMILSAAPAALNLGTGKQGTTAMGITVDSRVLSPHDKKRTVRHLLSLGATDRDVPENVASTLVGAVRRGDNSMVRLLLDAARQEVGDFWGADAVYLAIIVAAGNGLAKILEMLITAEGEERQQRWTRVRV-SGVPAVFRRGCEPLCLDDRRPSRGRRGRAGPRRRGLLAPSSMRQQGSQPKTSTQTTARHPPSGGRWRVRPLSGPVPGRGRLR*YLHL*PVVLVLLLLPGGGLRKSSTA---------STGVRIFRPKDKRFFTTRFGRYSRK 1396
+AGAD RD AG TPL+ + G + + L + GA+P + N ++ M+ AAG G+ ++ +IL+ P+ LN+ K G T MGI + ++R V HLLS GA+D V E A+ + A G MVR++L+ VG G A+ +I VA AKILEML++AEGE+ +++W R+ G P + + S G R P R G LA G + + AR P VR L R R + L GG S A S GV+I+RP RFF TRF RY+ K
Sbjct: 151 EAGADFNSRDGAGETPLMLTAL-----ADTGALLARELFKVGASPFVKNADGMSAMHVAAGLGNLEVMTVILTNTPSVLNVLDNK-GFTPMGIA------ALRGQRRAVFHLLSAGASDLGVDEQNAA-IFWACDGGHPRMVRMMLEHGINRVG---GLGAIPNSIGVAVQGRQAKILEMLVSAEGEDNRRKWAECRLRDGTPLHLAAAWVSVRVMHVLLSAGARETL-PNRYGKLA-------GEEVGIALGPPARRSPRKEAAVVRMLQRGPAYRARSYGWPTL-----------DGGNGTSDVALSSRTRGAKSFGVQIYRPTGTRFFATRFARYANK 456
BLAST of mRNA_L-elsbetiae_contig8642.17678.1 vs. uniprot
Match: D8LSK4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK4_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 1.570e-10 Identity = 67/213 (31.46%), Postives = 105/213 (49.30%), Query Frame = 2
Query: 392 RCFAQAGADLTPRDRAGTTPLLAALIIRYDGGTPGLDMVQALLRRGANPLLANDQRLAPMNQAAGHGDTGMVDMILSAAP-AALNLGTGKQGTTAMGITVDSRVLSPHDKKRTVRHLLSLGATDRDVPE-NVASTLVGAVRRGDNSMVRLLL-DAARQEVGDFWGADAVYLAIIVAAGNGLAKILEMLITAEGEERQQRWTRVR-VSGVPAVF 1018
R +AGADL R+ G TPL+ A + +G +++ + LL+ G + L + A ++ AA G+ ++ +LS + LNL T + G T + + V+ V LLS GA+ R + E N A G S++R+L + VG GA + ++ A G A+IL +L+ AEG+ERQ+ W R R V G P V+
Sbjct: 99 RELIKAGADLNGRNYQGCTPLMMACRVDKEGAER-VELARELLKAGVDTTLVDADGRAALHYAAYSGNEALIQALLSKGSLSTLNLAT-QDGKTPLCVAVEFVHCG------VVSLLLSAGASQRGLQEGNYPCPFRSAAALGYESILRILCSERGMDAVGG--GAAVLPNSLACATRRGKARILRLLLAAEGQERQEHWARRRLVLGRPLVY 301
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 83.2 |
| Seed ortholog evalue | 1.9e-13 |
| Seed eggNOG ortholog | 2880.D7G4M4 |
| KEGG ko | ko:K10324,ko:K21435 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0001654,GO:0001736,GO:0001737,GO:0001738,GO:0001745,GO:0002009,GO:0002165,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0007163,GO:0007164,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0008544,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009913,GO:0009987,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0030855,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0042067,GO:0044424,GO:0044464,GO:0048513,GO:0048563,GO:0048569,GO:0048592,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0060429,GO:0060562,GO:0071840,GO:0090596,GO:0120036 |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG0504@2759 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03036,ko04121 |
| Exons | 3 |
| Model size | 1668 |
| Cds size | 744 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622816946.1873288-UTR-L-elsbetiae_contig8642:2223..2508 | 1622816946.1873288-UTR-L-elsbetiae_contig8642:2223..2508 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8642 2224..2508 - |
| 1691683932.3022394-UTR-L-elsbetiae_contig8642:2223..2508 | 1691683932.3022394-UTR-L-elsbetiae_contig8642:2223..2508 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8642 2224..2508 - |
| 1622816946.1986144-UTR-L-elsbetiae_contig8642:3466..3603 | 1622816946.1986144-UTR-L-elsbetiae_contig8642:3466..3603 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8642 3467..3603 - |
| 1691683932.319014-UTR-L-elsbetiae_contig8642:3466..3603 | 1691683932.319014-UTR-L-elsbetiae_contig8642:3466..3603 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8642 3467..3603 - |
| 1622816946.2343123-UTR-L-elsbetiae_contig8642:4552..5054 | 1622816946.2343123-UTR-L-elsbetiae_contig8642:4552..5054 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8642 4553..5054 - |
| 1691683932.3629417-UTR-L-elsbetiae_contig8642:4552..5054 | 1691683932.3629417-UTR-L-elsbetiae_contig8642:4552..5054 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8642 4553..5054 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622816946.2098832-CDS-L-elsbetiae_contig8642:3603..4029 | 1622816946.2098832-CDS-L-elsbetiae_contig8642:3603..4029 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8642 3604..4029 - |
| 1691683932.3387907-CDS-L-elsbetiae_contig8642:3603..4029 | 1691683932.3387907-CDS-L-elsbetiae_contig8642:3603..4029 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8642 3604..4029 - |
| 1622816946.2218266-CDS-L-elsbetiae_contig8642:4234..4552 | 1622816946.2218266-CDS-L-elsbetiae_contig8642:4234..4552 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8642 4235..4552 - |
| 1691683932.3517988-CDS-L-elsbetiae_contig8642:4234..4552 | 1691683932.3517988-CDS-L-elsbetiae_contig8642:4234..4552 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8642 4235..4552 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8642.17678.1 >prot_L-elsbetiae_contig8642.17678.1 ID=prot_L-elsbetiae_contig8642.17678.1|Name=mRNA_L-elsbetiae_contig8642.17678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=248bp
MVQALLRRGANPLLANDQRLAPMNQAAGHGDTGMVDMILSAAPAALNLGT GKQGTTAMGITVDSRVLSPHDKKRTVRHLLSLGATDRDVPENVASTLVGA VRRGDNSMVRLLLDAARQEVGDFWGADAVYLAIIVAAGNGLAKILEMLIT AEGEERQQRWTRVRVSGVPAVFRRGCEPLCLDDRRPSRGRRGRAGPRRRG LLAPSSMRQQGSQPKTSTQTTARHPPSGGRWRVRPLSGPVPGRGRLR* back to topmRNA from alignment at L-elsbetiae_contig8642:2224..5054- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8642.17678.1 ID=mRNA_L-elsbetiae_contig8642.17678.1|Name=mRNA_L-elsbetiae_contig8642.17678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2831bp|location=Sequence derived from alignment at L-elsbetiae_contig8642:2224..5054- (Laminarionema elsbetiae ELsaHSoW15) CAGGAGAGGCGCGAATATGGAGGCCGCTGTGCCTCGAGACGTGCCTGGTG
GATGGGAAGCGCAACCTTTACCGAAAGGGGCGCGAACGCTGCACGCCGCC
GTGGCGAGCGGAAGCTAGGGGCCGTACAGGCGGTGCTCGAAGCAGGAGTT
CGCTTTGATTGTCAGCACGCTCCCGCAGAGCCGGAACCAGAAGAGTGCTT
GCTCCTCTCGTGCTTGGCGCCTTTGCGCAACGTAGACGTGCCGATTCTTA
GAACCTCTGTGCGTACATACTGCGACGCTCGCAGAGGGGGTGCGCCCTTG
CGGGTGTGCTCGAAACGGCGCCCCGGACTTATTTGCCCCATCTGGGGGAA
GCCCTCGCATTGCCAGTAACGATAACCATGGATGACACCATCGCTGTTTT
GCGCAAGCAGGCGCAGACCTTACCCCGCGGGACAGGGCAGGCACCACGCC
GCTTCTCGCGGCCCTCATCATCCGGTACGATGGAGGTACGCCGGGGTTGG
ACATGGTGCAAGCGCTGCTGAGGCGGGGTGCCAACCCTCTGCTGGCCAAC
GACCAAAGGCTCGCTCCGATGAACCAGGCCGCTGGCCACGGAGACACTGG
CATGGTCGACATGATACTCTCTGCGGCACCGGCGGCGCTCAACCTGGGAA
CCGGCAAGCAGGGCACTACCGCCATGGGCATAACGGTGGATTCGCGTGTG
CTCTCTCCCCACGACAAGAAGAGGACAGTGCGCCATCTTCTTTCGCTGGG
GGCCACTGACAGGGACGTGCCGGAGAATGTGGCAAGTACGCTCGTCGGAG
CGGTGCGTCGAGGCGACAACGTGAGTTCGTATTTTTTGCTACCGCCGCTT
CGCAATAGTACTTGGTACGCATGTTTGTGTGCAACTGCTCTTCATGAAAT
CGTCATCAGCCCATACAGTTGCCCGGCGCTTCTACATACACCCCGCGGCA
AAAGCAAATCGAAAGCGAGCGTTTCCATGGCGAACCCCGCATTGATGCTC
CCGTGCGTTTTCGCATGCTTTGCAGAGCATGGTACGCCTACTGCTGGACG
CAGCGCGGCAAGAGGTGGGAGATTTTTGGGGTGCAGACGCGGTCTATTTG
GCCATTATCGTGGCAGCCGGGAACGGGCTTGCCAAGATCCTCGAGATGCT
CATCACCGCCGAGGGCGAAGAACGGCAACAACGTTGGACGAGAGTGCGCG
TGAGCGGCGTGCCGGCCGTTTTTCGGCGCGGCTGCGAGCCGCTCTGCCTC
GACGACCGGCGTCCTTCTCGCGGCCGGCGCGGACGAGCAGGACCTCGACG
ACGAGGGCTACTTGCGCCATCGAGTATGCGGCAACAAGGCTCCCAGCCGA
AAACATCAACGCAGACAACAGCAAGACATCCGCCGTCAGGCGGACGCTGG
AGAGTGCGCCCGCTTTCCGGGCCCGTTCCTGGGCGTGGTCGGCTGCGGTG
ATATCTTCATTTATAGCCGGTTGTGCTGGTGCTTCTGTTACTGCCGGGGG
GGGGGCTTCGTAAGTCGAGTACGGCCTCTACAGGTGTCCGCATCTTCCGG
CCGAAGGACAAAAGGTTTTTCACGACCCGGTTTGGCAGGTGGGGTGGGTG
GGGCACAAGGTGAAAAAAACCTTGTAGGTGTTGATCTTCGCACTCTTGGC
TTTGGTCGTGCGTATCCAACGCGCAGTATGTCCGAGTAGGATCGTGGTAA
ACCGTCTGCCCTGCCCAGGTTAGAAGTGTTGGGGTCACCAAACAATCTAT
AATTTTGCGGGCGTCGTGTGCTCAGCGCCGGTTTGATTGTCCCGAACGGA
AAAGGGGGGTGGTAGAACCTCGTCTCCTGCAAGGTGCCGAAAACGCGTTG
TTGTTCAACGGCATCCGTTCGGGTTTCGTTAGCATGTTTTTTTGCCTTTC
ATCCGCACACTTCCAACCGGTGCGGACGTCCTTGATGTTCCCCCCGCCAT
TTTACTCAACGCGCGCAAGTATACTCTGTAATGGCGCCATAGTTACATAT
TGAGATGTCGATCAGGCTAGAACTGCCTCGGCCCTTCACAACCAAGGTTG
AAATATTTGCTGCGGATGCATGTTGCACTTACCTTGATTCGCCTCCCCCA
TCCGCGGGCGCGTGCATGCCGTAGGTGACAAAAGATAAGACACCCCCTGG
ACTGATTTTCAAAGCTCAAGTACTCCACAGCAAGCAGAGCGTCAGTCCCG
AAAAGGGCGGCGCTGGAAAGATCGCGTCGAGAGCTGTCCGAAAATGTGTC
CGTGTGGTATTAGAATCGTATTCGTTGCGGAGTAACCAAGCTTTCAATCT
CGGTCCAGAGGGTGTCTTATCTTATGGCATAGTAATATACGGTACACGCC
CGGAGTGAGGTACTGCGAGGCTTGGTATTTCACATGCCTGCCGCCGCCTG
CTGTTGCACCGTTGTGGATGCTACACATGTCAGGCTACCGGCTGACGCAA
AGCGAAATCGTTTTCTCTGCTACTCAAAAGTCGCTTTTCTATTTGAGTCG
CATATATTGGTGCGCGGTGTTACCTCTTGCTCGGTACCGTCTCCAGGTAT
TCTCGCAAGTTCTGAGGGGCTGACGAAGACGTCAGCAAACTCTGGGCGAC
GAAAATCTTGTGCGGTGTACTTAGACTATGTACGTAGTGCTCGATGTGCG
GTTGGTGAGAGGCTCGTTGGCGCCATGTGGTGGTGGCGGGGCGTTGCTGT
ACTTGTGCTGCTTTAGGTGGAAGCGCTCTGTGACCCAGCGATGAGCATCT
TCCTCCCTGTTTTGGTTGCATTTTTGTCCACCACGGTTGTATGCGGTAGA
CTCGGCTCGATTGGAGGAGTGTCACGTAGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8642:2224..5054- >mRNA_L-elsbetiae_contig8642.17678.1 ID=mRNA_L-elsbetiae_contig8642.17678.1|Name=mRNA_L-elsbetiae_contig8642.17678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1488bp|location=Sequence derived from alignment at L-elsbetiae_contig8642:2224..5054- (Laminarionema elsbetiae ELsaHSoW15) ATGGTGCAAGCGCTGCTGAGGCGGGGTGCCAACCCTCTGCTGGCCAACGA CCAAAGGCTCGCTCCGATGAACCAGGCCGCTGGCCACGGAGACACTGGCA TGGTCGACATGATACTCTCTGCGGCACCGGCGGCGCTCAACCTGGGAACC GGCAAGCAGGGCACTACCGCCATGGGCATAACGGTGGATTCGCGTGTGCT CTCTCCCCACGACAAGAAGAGGACAGTGCGCCATCTTCTTTCGCTGGGGG CCACTGACAGGGACGTGCCGGAGAATGTGGCAAGTACGCTCGTCGGAGCG GTGCGTCGAGGCGACAACATGGTGCAAGCGCTGCTGAGGCGGGGTGCCAA CCCTCTGCTGGCCAACGACCAAAGGCTCGCTCCGATGAACCAGGCCGCTG GCCACGGAGACACTGGCATGGTCGACATGATACTCTCTGCGGCACCGGCG GCGCTCAACCTGGGAACCGGCAAGCAGGGCACTACCGCCATGGGCATAAC GGTGGATTCGCGTGTGCTCTCTCCCCACGACAAGAAGAGGACAGTGCGCC ATCTTCTTTCGCTGGGGGCCACTGACAGGGACGTGCCGGAGAATGTGGCA AGTACGCTCGTCGGAGCGGTGCGTCGAGGCGACAACAGCATGGTACGCCT ACTGCTGGACGCAGCGCGGCAAGAGGTGGGAGATTTTTGGGGTGCAGACG CGGTCTATTTGGCCATTATCGTGGCAGCCGGGAACGGGCTTGCCAAGATC CTCGAGATGCTCATCACCGCCGAGGGCGAAGAACGGCAACAACGTTGGAC GAGAGTGCGCGTGAGCGGCGTGCCGGCCGTTTTTCGGCGCGGCTGCGAGC CGCTCTGCCTCGACGACCGGCGTCCTTCTCGCGGCCGGCGCGGACGAGCA GGACCTCGACGACGAGGGCTACTTGCGCCATCGAGTATGCGGCAACAAGG CTCCCAGCCGAAAACATCAACGCAGACAACAGCAAGACATCCGCCGTCAG GCGGACGCTGGAGAGTGCGCCCGCTTTCCGGGCCCGTTCCTGGGCGTGGT CGGCTGCGGTGAAGCATGGTACGCCTACTGCTGGACGCAGCGCGGCAAGA GGTGGGAGATTTTTGGGGTGCAGACGCGGTCTATTTGGCCATTATCGTGG CAGCCGGGAACGGGCTTGCCAAGATCCTCGAGATGCTCATCACCGCCGAG GGCGAAGAACGGCAACAACGTTGGACGAGAGTGCGCGTGAGCGGCGTGCC GGCCGTTTTTCGGCGCGGCTGCGAGCCGCTCTGCCTCGACGACCGGCGTC CTTCTCGCGGCCGGCGCGGACGAGCAGGACCTCGACGACGAGGGCTACTT GCGCCATCGAGTATGCGGCAACAAGGCTCCCAGCCGAAAACATCAACGCA GACAACAGCAAGACATCCGCCGTCAGGCGGACGCTGGAGAGTGCGCCCGC TTTCCGGGCCCGTTCCTGGGCGTGGTCGGCTGCGGTGA back to top
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