mRNA_L-elsbetiae_contig858.17618.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig858.17618.1
Unique NamemRNA_L-elsbetiae_contig858.17618.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig858.17618.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 617 bits (1591), Expect = 4.010e-202
Identity = 346/655 (52.82%), Postives = 437/655 (66.72%), Query Frame = 2
Query:    2 EFPRGFSFPAVDQVVPNAWIKAYDAMDAVKRTTPCVMWSEAVAKFSSAMSGTLPESDDPGKVLLRAMRHREAEGGALLSLADASAPVATDMLHLDPSWLVELVRRLADHNLVDEDEKKQGTIKQQLRRYAKEQRTDFEPLWKMHRVYCKSGHLSQDYLRFLWTYREVKSLGPVVVLTERKIESIISTMVRLQVMYKARGKGDFVVPARLPEYGDQRVLNPDNIGEIVAVMKCSFGIVYPPPGIVGRFLAWLTP-VDRYGECWQHGAFVSYNY----HKVFFFESEDSEPHEDGTESKFAGLTLGVQGRREEALPILEDLKVSLTELVSDKTD--PGLASSMSFEEPVETKSNELLTLRSLLDNIGDR-----------------LEKIEMKLDGVANQLVEQMMLPASAKQEECPYPRLVILVPKAE--ECRKQGRIQREGWNKWTDAWKKLDESVGLHQEFRLRFFCEYSLAEVPCGPDGCGYLIKKPKDWVKKCVPLMQASLWVLRVAVGMVSHVDLPVNEVLGAAIKGTGETLLDGIGTEVPSTIKTDQ-SAFGEGVPVSKMKEFKDLQEPAYKSMCEFMREVEAEASPPRRWFACPPCYRESGPPTVSWKDSMVQERN-GHGGWAWVLRKNQEAYVRAGGNRDTASTGSAP 1882
            E P GF+FPAVDQ V  AWI+AYDAMD +K T PCV+WS AV +F   MSG  P + D GKVLLRAM+HREAEGG LLSLAD SAPVA+DMLHLDPSWL+ELVRRLADHNLVD+D+KK+G+++Q LR YAK Q     PL+ +H VYC+SG L++ YLRFLW +R+++  GP V LT+ + ESI+STM RL VMY AR   + VVPARL EYGDQR+  PD +  +V  ++CSFG VYPPPGIVGRFLAW    V  YGECWQHGAF SY Y    + VF +ESE  E H+DGT   FAGLTLG+QG   +A  +LE+L+ SL  LVSD     PGL   M F    E +S+ L+ L S+LD                      LE+   KL G+  QL+EQ +LPAS   E+  YPRLV++ P+ E  E     RIQR GW++WT A  ++    G H+ FR+ F C + L+EVPCGP G G+ IK PKDWVK+ +PLMQ SLW+LRVAVG VS+VDLP+N+VLGA +  TG  LL+G+G +VP  I +     F EG   ++M  FKDL+  +Y+ +C+FMR+V  E+SPP+    C PC+R      V W+D MVQ RN   G  AWVL+ N++A++R  G     +T  AP
Sbjct:  526 ECPTGFNFPAVDQTVSKAWIEAYDAMDVLKGTAPCVLWSRAVEEFRRKMSGIPPVAGDAGKVLLRAMQHREAEGGVLLSLADDSAPVASDMLHLDPSWLIELVRRLADHNLVDKDKKKRGSLEQGLRVYAKRQGLAAAPLFDIHNVYCRSGRLNRAYLRFLWMHRKIEGPGPTVDLTDPEFESIVSTMERLLVMYTARDADNLVVPARLQEYGDQRI--PDRLTNMVLKIECSFGQVYPPPGIVGRFLAWSAQQVADYGECWQHGAFFSYKYQYARYDVFLYESEVEEAHQDGTVDMFAGLTLGIQGPPPQAAEVLEELRKSLESLVSDSAYGYPGLVGPMYFRPAEEIESSLLVRLGSVLDXXXXXXXXXXXXXXXXXXXXXSLEETVRKLGGIVTQLLEQDLLPAS--DEQSAYPRLVLVRPELETAEDMTHERIQRAGWDRWTKALSEM----GFHK-FRVHFLCGHDLSEVPCGPGGRGFPIKHPKDWVKQWLPLMQVSLWMLRVAVGAVSNVDLPLNKVLGAFVMATGAELLEGVG-KVPDRISSAALPVFSEGATRAEMDGFKDLRGKSYEGLCKFMRDV--ESSPPQCLSGCLPCHRTLA--VVDWRDHMVQVRNPSTGRRAWVLKTNEKAFLREHGG--APATAGAP 1164          
BLAST of mRNA_L-elsbetiae_contig858.17618.1 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 5.150e-83
Identity = 218/652 (33.44%), Postives = 337/652 (51.69%), Query Frame = 2
Query:   17 FSFPAVDQVVPNAWIKAYDAMDAV--KRTTPCVMWSEAVAKFSSAMSGTLPES-----------DDPGKVLLRAMRHREAEGGALLSLADASAPVATDMLHLDPSWLVELVRRLADHNLVDEDEKKQGTIKQQLRRYAK---EQRTDFEPLWKMHRVYCKSGHLSQDYLRFLWTYREVKSLGPVV--VLTERKIESIISTMVRLQVMYKARGKGD-----FVVPARLPEYGDQRVLNPD-NIGEIVAVMKCSFGIVYPPPGIVGRFLAWLTP-VDRYGECWQHGAFVSY----NYHKVFFFESEDSEPHEDGTESKFAGLTLGVQGRREEALPILEDLKVSLTELVSDKTD--PGLASSMSFEEPVETKSNELLTLRSLLDNIGDRLEKIEMKLDGVANQLVEQMM--LPASAKQEECPYPRLVILVP---------KAEECRKQGRIQ-REGWNKWTDAWKKLDESVGLHQEFRLRFFCEYSLAEVPCGPDGCGYLIKKPKDWVKKCVPLMQASLWVLRVAVGMVSHVDLPVNEVLGAAIKGTGETLLDGIGTEVPSTIKTDQSAFGEGVPVSKMKEFKDLQEPAYKSMCEFMREVEAEASPPR-RWFACPPCYR----ESGPPTVSWKDSMVQERNGHGGWAWVLRKNQE 1828
            FSFPAV  ++P AW+ A  A++A+  ++ TP V+W +AV  F         E            +D    L  AM+HREAEGG +LSL D S+P  +DM+H+DP WL+ELVRR+ DHNLVD+  KKQ  I Q+L  Y +   +  + ++ L + H  + + G L++DYLRFLW +R+++  G      L +   +S++ TM++   +Y + G+        +VPARLPE+G+  +L     +GE+V      F   + P GI+GRFLA+ +   +  G+CWQHGA + +    N H V   E+   +    G +S F  + + V+G+  EA  +L ++   L  L+ D     PGL   + FEE   T+S++          +  +L KI   L+    + V       P+     E PYPRLV+L P         +AEE    G IQ R  W++W D  +      G   +F L F CE   +E+PCGP G G+ +  P        PL+Q +LW++++AVG V+ VDLP+++VL A +  T   +L+   ++   +   D+    EG        FK+L  PAYK++C+FM   + E  P   R  +C P YR    E  P    W+  M   +NG G ++WV + +++
Sbjct: 1505 FSFPAVATILPAAWVDAIAAVEALHKEKGTPYVLWGDAVRAFQRYFQEKHKEEGKEERNKPLSDEDAATNLKEAMKHREAEGGVILSLRDESSPAQSDMIHVDPRWLIELVRRVTDHNLVDK--KKQNKILQELLEYDRTRPDTLSGYKNLCETHACFIRQGRLNRDYLRFLWVHRKLEVEGDYAGAQLDKDAFDSMVDTMIKYLFIYPSHGECSNAEDCHIVPARLPEHGNDNILEESIGLGEVVVGKTAWFLRSHAPTGIIGRFLAFTSSRFEASGKCWQHGAHIQWKKDSNEHDVLLCETTIEKDIIPG-QSTFPAIAICVKGKTAEAKGVLREVGEQLLSLLQDNIHGYPGLRLPI-FEELNITQSDQFQV--HFERYLATQLAKI---LEDTRRESVRMFRAAFPSYGDPVELPYPRLVLLKPVETTSIQETQAEES-VNGAIQLRRTWDRWIDLCRS-----GGSCDFVLVFLCERDFSEIPCGPQGKGFRVHNPGSLFNTLKPLLQGALWLVKIAVGTVASVDLPLHDVLEAFLHATAAEVLEAAPSQFSPSATLDEGQ-QEG--------FKELHGPAYKALCDFM--TKEEFGPEEARCESCLPWYRPRVHEPIPSEFDWRSHMEMIKNGIG-YSWVRKSSEQ 2129          
BLAST of mRNA_L-elsbetiae_contig858.17618.1 vs. uniprot
Match: A0A6H5JR01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR01_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 1.500e-72
Identity = 195/636 (30.66%), Postives = 319/636 (50.16%), Query Frame = 2
Query:   17 FSFPAVDQVVPNAWIKAYDAMDAVKRTTPCVMWSEAVAKFSSAMSGTLPESDDPGKVLLR-AMRHREAEGGALLSLADASAPVATDMLHLDPSWLVELVRRLADHNLVDEDEKKQGTIKQQLRRYAK---EQRTDFEPLWKMHRVYCKSGHLSQDYLRFLWTYREVKSLGPV--VVLTERKIESIISTMVRLQVMYKARGK-----GDFVVPARLPEYGDQRVLNPDNIG--EIVAVMKCSFGIVYPPPGIVGRFLAWLTP-VDRYGECWQHGAFVSY----NYHKVFFFESEDSEPHEDGTESKFAGLTLGVQGRREEALPILEDLKVSLTELVSDKTDPGLASSMSFEEPVETKSNELLTLRSLLDNIGDRLEKIEMKLDGVANQLVEQMMLPASAKQEECPYPRLVILVPKAEECRKQGRIQ--------REGWNKWTD-AWKKLDESVGLHQEFRLRFFCEYSLAEVPCGPDGCGYLIKKPKDWVKKCVPLMQASLWVLRVAVGMVSHVDLPVNEVLGAAIKGTGETLLDGIGTEVPSTIKTDQSAFGEGVPVSKMKEFKDLQEPAYKSMCEFMREVE-----AEASPPRRWFACPPCYRESGPPTVSWKDSMVQERNGHGGWAWVLRKNQE 1828
            FSFPAV  ++P+AW+   DA+ A +R      + +   K         P SD+     L+ AM+HREAEGG +LSL + S+P  +DM+H+DP WL++LVRR+ DHNLVD+  K +  I ++L  Y +   +  + ++ L + H  + + G L++ YLRFLW +R+++  G    V L     +S++ TM++   +Y + G+     G ++VPARLPE G   VL  ++IG  E+V      F   + P GI+G FLA+ +   +  GECWQHGA + +    N H +   E+   +    G       + + V+G+  EA  +L ++   L  L+ D         + FE  + TK      L ++L++   R E + M           +   P+  +  E  YPRLV+L P      ++ +++        R  W++W D  W       G   +F L   CE   +E+PCGP G G+ +  P        PL+Q +LW++++AVG V+ V LP+++VL A +  T   +L+   ++   +   D+    EG        FK+L  PAYK++C+FMR+ E     A+  P   W    P   E       W+  M + +NG G ++WV + +++
Sbjct:   77 FSFPAVATILPSAWVLWGDAVKAFQR------YFQEKHKEEREDERNKPLSDEEASSNLKEAMKHREAEGGVILSLREESSPAQSDMIHVDPRWLIDLVRRVTDHNLVDK--KNEHEILKELLEYGRTRPDTLSGYKNLCETHTCFIRQGRLNRKYLRFLWVHRKLEVEGGYAGVQLENDTFDSMVDTMIKYLFIYPSHGECSKAEGFYIVPARLPEIGKDNVLE-ESIGLDEVVVGKTAWFLRSHAPTGIIGCFLAFTSSRFEASGECWQHGAHIQWKKDSNEHDMLLCETTIEKDIIPGP-GTLPAIAICVKGKTAEAKGVLREVGEQLLSLLKDVIH------VHFERYLATK------LATILEDT--RRESVRMF----------RAAFPSYGEHVELLYPRLVLLKPVETTSIQETQVESVSGAKKLRRTWDRWIDLCWS------GGSCDFVLVILCERDFSEIPCGPQGKGFRVHNPGSLFNTLKPLLQGALWLVKIAVGTVASVYLPLHDVLEAFLHATAAEVLEAAPSQFSPSATLDEGQ-QEG--------FKELHGPAYKALCDFMRKEEFGPEEAQCCPCLPWHR--PRVHEPILSEFDWRSHMYKIKNGVG-YSWVRKSSEQ 660          
BLAST of mRNA_L-elsbetiae_contig858.17618.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 5.170e-40
Identity = 160/610 (26.23%), Postives = 279/610 (45.74%), Query Frame = 2
Query:   14 GFSFPAVDQVVPNAWIKAYDAMDAVKRTT--------------------------PCVMWSEAVAKFSSAMSGTLP----ESDDPGKVLLRAMRHREAEGGALLSLADASAPVATDM-------LHLDPSWLVELVRRLADHNLVDEDEKKQGTIKQQLRRYAKEQRTDFEPLWKMHRVYCKSGHLSQDYLRFLWTYREVK------SLGPVVVLTERKIESIISTMVRLQVMYKARGKGD-FVVPARLPEYG----DQRVLNPDNIGEIVAVMKCSF-GIVYPPPGIVGRFLAWLTPVD-RYGECWQHGAFVSYNYHKVFFFESEDSEPHEDGTESKFAGLTLGVQGRREEALPILEDLKVSLTELVSD------------------------KTDPGLASSMSFE--EPVETKSNELLTLRSLLDNIGDRLEK---------------IEMKLDGVANQLVEQMMLPASAKQEECPYPRLVIL----VPKAEECRKQGRIQREGWNKWTDAWKKLDESVG-LHQEFRLRFFCEYSLAEVPCGPDGCGYLIK--KPKDWVKKCVPLMQASLWVLRVAVGMVSHVD-LPVNEVLGAAIKGTGETLLDGIG 1546
            G+SFP+V+  VP   + A   ++AV+R                            P V++ EA+++F   ++G  P    ++ +  +V L A++  E +G  LL+ AD    +  DM       +H++P+W  +L+RR+ D  L+D  + +Q  +   ++R       D   L K H  +  +G L++ Y+RFLW  R+++      +  P + ++E  I +I+ +++ ++ M++ R   D ++VP+ LP++     D + L    +G  +   +  F G    PPG++ R LAW    D R   CW+ G   S+  H V  +E      H D   +      +G     E+A   LED+   L +LV D                        +T  GL +  + E  E +  K  EL      LD+I   +EK               + ++LD +A    E +++ A   +++ P PRL+++    VP++++ R     +RE  +       +L    G   Q +R+RF C Y L+   CG DG GY ++    K W++K +P++Q +LW +RV V +VS  D LPV++V+G   +  GE     IG
Sbjct:  273 GYSFPSVNNEVPEPHLLAVATLEAVRRGVSLRGSGGEPAEVARRLNAGTKVGEGHPFVLFPEALSRFLE-VAGEKPMFGGKATEGARVFLAAIKLHEVQGAILLTRADGGGEME-DMASEEHLVIHMNPAWFADLIRRIVDVRLLDPAQARQEKVADLIKRQPPASVGD---LSKQHHRFFLAGELNRRYMRFLWKDRDLELGPASPNTAPPLEMSEEDITTIVESLLDVRFMFRVRQNEDHYIVPSCLPDHVGCDMDPKKLMELEVGGAIFSRRLEFVGAHSVPPGLIPRLLAWCGQGDERITACWKRGVCFSFKEHLVLLYE------HRDAGRAVIECHAMG-SAHDEKAWRTLEDVVTELGQLVGDAKYGFPGVGLFFVGGGDKQKVSSAETLEGLLTRFTGELKEQINVKVEEL---GQKLDDIAGGVEKHLRKGQEEMASLREDVSLQLDCIAAVTSECLLVSA---EKDIPCPRLIMVSEDDVPESDQSR-LSHFRREMMD-------QLFLGKGQTPQHYRIRFLCAYDLSAATCGEDGLGYKVEIGSWKGWLQKYMPVIQVALWTVRVGVSVVSRADILPVDDVMGKLREVAGEEAATMIG 856          
BLAST of mRNA_L-elsbetiae_contig858.17618.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 7.420e-31
Identity = 150/609 (24.63%), Postives = 266/609 (43.68%), Query Frame = 2
Query:   14 GFSFPAVDQVVPNAWIKAYDAMDAVKRTT-------------------------PCVMWSEAVAKF------SSAMSGTLPESDDPGKVLLRAMRHREAEGGALLSLADASA------PVATD--MLHLDPSWLVELVRRLADHNLVD--EDEKKQGTIKQQLRRYAKEQRTDFEPLWKMHRVYCKSGHLSQDYLRFLWTYREVKSLGPV--------VVLTERKIESIISTMVRLQVMYKAR-GKGDFVVPARLPEYG----DQRVLNPDNIGEIVAVMKCSFGIVYP-PPGIVGRFLAWLTPVD-RYGECWQHGAFVSYNY-HKVFFFESEDSEPHEDGTESKFAGLTLGVQGRREEALPILEDLKVSLTELVSDKTD--PGLASSMSFEEPVE----TKSNELLTLRS-----LLDNIGDRLEKIEMKLDGVA------------------NQLVEQMMLPASAK----------------QEECPYPRLVILVPKAEECRKQGRIQREGWNKWTDAWKKLDESVGLHQEFRLRFFCEYSLAEVPCGPDGCGYLIKKP--KDWVKKCVPLMQASLWVLRVAVGMVSHVD-LPVNEVLGAAIKGTGE 1525
            G+SFP+V+  VP   + A   ++AV+R                           P +++ EA++ F       S   G   E +   +  L A+   E +G  L++ AD         P +    ++H++P+W  +L+RR+ D  L+D  + EK    IK+Q      E       L K H  +  +G +S+ Y++FLW  R+++ LGP           ++E  I +++ +++ ++ M++ R  K  ++VP+ LP++     D + L   ++G  +   K   G   P PPG++ R LAW +  D R   CW+ G   ++N  H V  +E       ++   S      +G     E+A   L+D+   L  LV D     PG+   + F+  VE    T + EL  L S     L D++    +++  K + +A                  N  ++Q+    S K                +++ P PRL++++          R+     +   D   + +      Q +R+RF C Y L    CG DG GY ++    ++W+K C+P+++ SLW+LRV + +V+  D LPV+ V+    +  GE
Sbjct:  441 GYSFPSVNSEVPEPHLLAVATLEAVRRGATLRGSGGDPAEVVRRLDGEKLDEGQPFILFPEALSLFLEVAGEKSLFGGNATEGE---QAFLAAITLHERQGAILVTRADGGGEKEDMKPASEQHLVIHVNPAWFADLIRRIVDVRLLDPAQQEKLAEVIKRQSPASVAE-------LSKQHGRFFLAGEVSKRYMKFLWKERDLE-LGPASPSLAAPPFEMSEETITTMVESLLAVRFMFRVRHNKDHYIVPSCLPDHVGCTVDAKKLLGLDVGGAIFSRKLQLGGEQPVPPGLIPRLLAWCSQGDARITTCWKRGVCFAFNRKHLVLLYEHR-----KEAGRSVIECHAMG-SAHNEKAGGTLDDVVAELRRLVGDPKYGFPGIW--LFFDGGVEHQKATSAGELDKLLSRFAGELKDHMNVNFKELARKSNVIAGGVERHLRKGQEEMATSFNHQIQQLGQDMSRKLDCIAAVTSKCLLVSVEKDIPCPRLIMVLEDVSPGSALSRLSHFRRD-MVDKLLRREGEGPAPQCYRIRFLCAYDLTAGTCGKDGLGYKVEIQGWQEWLKACLPVIKVSLWLLRVGISVVTRADVLPVDGVIETLEEVAGE 1029          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig858.17618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LKS5_ECTSI4.010e-20252.82LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LK68_ECTSI5.150e-8333.44LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JR01_9PHAE1.500e-7230.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSN1_9PHAE5.170e-4026.23Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPJ1_9PHAE7.420e-3124.63Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig858contigL-elsbetiae_contig858:7511..10826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.5
Seed ortholog evalue7.3e-75
Seed eggNOG ortholog2880.D8LK68
KEGG rclassRC00043,RC00070,RC00090,RC00992,RC02896
KEGG koko:K03800,ko:K16666
KEGG ReactionR07770,R07771,R11143
KEGG Pathwayko00785,ko01100,map00785,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC6.3.1.20
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size2639
Cds size1821
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig858.17618.1prot_L-elsbetiae_contig858.17618.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig858 7587..10084 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816940.3538787-UTR-L-elsbetiae_contig858:7510..75861622816940.3538787-UTR-L-elsbetiae_contig858:7510..7586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig858 7511..7586 +
1691683928.1405602-UTR-L-elsbetiae_contig858:7510..75861691683928.1405602-UTR-L-elsbetiae_contig858:7510..7586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig858 7511..7586 +
1622816940.39718-UTR-L-elsbetiae_contig858:10084..108261622816940.39718-UTR-L-elsbetiae_contig858:10084..10826Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig858 10085..10826 +
1691683928.1843097-UTR-L-elsbetiae_contig858:10084..108261691683928.1843097-UTR-L-elsbetiae_contig858:10084..10826Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig858 10085..10826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816940.3643925-CDS-L-elsbetiae_contig858:7586..79451622816940.3643925-CDS-L-elsbetiae_contig858:7586..7945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig858 7587..7945 +
1691683928.1518567-CDS-L-elsbetiae_contig858:7586..79451691683928.1518567-CDS-L-elsbetiae_contig858:7586..7945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig858 7587..7945 +
1622816940.3746974-CDS-L-elsbetiae_contig858:8354..93451622816940.3746974-CDS-L-elsbetiae_contig858:8354..9345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig858 8355..9345 +
1691683928.1611388-CDS-L-elsbetiae_contig858:8354..93451691683928.1611388-CDS-L-elsbetiae_contig858:8354..9345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig858 8355..9345 +
1622816940.3850183-CDS-L-elsbetiae_contig858:9613..100841622816940.3850183-CDS-L-elsbetiae_contig858:9613..10084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig858 9614..10084 +
1691683928.1758997-CDS-L-elsbetiae_contig858:9613..100841691683928.1758997-CDS-L-elsbetiae_contig858:9613..10084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig858 9614..10084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig858.17618.1

>prot_L-elsbetiae_contig858.17618.1 ID=prot_L-elsbetiae_contig858.17618.1|Name=mRNA_L-elsbetiae_contig858.17618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=607bp
MDAVKRTTPCVMWSEAVAKFSSAMSGTLPESDDPGKVLLRAMRHREAEGG
ALLSLADASAPVATDMLHLDPSWLVELVRRLADHNLVDEDEKKQGTIKQQ
LRRYAKEQRTDFEPLWKMHRVYCKSGHLSQDYLRFLWTYREVKSLGPVVV
LTERKIESIISTMVRLQVMYKARGKGDFVVPARLPEYGDQRVLNPDNIGE
IVAVMKCSFGIVYPPPGIVGRFLAWLTPVDRYGECWQHGAFVSYNYHKVF
FFESEDSEPHEDGTESKFAGLTLGVQGRREEALPILEDLKVSLTELVSDK
TDPGLASSMSFEEPVETKSNELLTLRSLLDNIGDRLEKIEMKLDGVANQL
VEQMMLPASAKQEECPYPRLVILVPKAEECRKQGRIQREGWNKWTDAWKK
LDESVGLHQEFRLRFFCEYSLAEVPCGPDGCGYLIKKPKDWVKKCVPLMQ
ASLWVLRVAVGMVSHVDLPVNEVLGAAIKGTGETLLDGIGTEVPSTIKTD
QSAFGEGVPVSKMKEFKDLQEPAYKSMCEFMREVEAEASPPRRWFACPPC
YRESGPPTVSWKDSMVQERNGHGGWAWVLRKNQEAYVRAGGNRDTASTGS
APAPTS*
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mRNA from alignment at L-elsbetiae_contig858:7511..10826+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig858.17618.1 ID=mRNA_L-elsbetiae_contig858.17618.1|Name=mRNA_L-elsbetiae_contig858.17618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3316bp|location=Sequence derived from alignment at L-elsbetiae_contig858:7511..10826+ (Laminarionema elsbetiae ELsaHSoW15)
AGAATTCCCCCGCGGTTTTAGTTTCCCTGCCGTTGATCAGGTCGTTCCCA ACGCTTGGATCAAGGCCTACGACGCCATGGACGCTGTCAAGAGGACAACG CCGTGTGTGATGTGGAGCGAAGCAGTCGCGAAGTTCAGTAGTGCAATGAG TGGAACTCTGCCCGAGTCCGACGACCCCGGCAAGGTGCTGTTGAGGGCGA TGCGGCACCGTGAAGCCGAGGGTGGTGCACTGTTGTCGCTAGCGGACGCC TCAGCACCTGTGGCAACCGATATGCTTCACCTGGACCCATCGTGGCTGGT CGAGTTGGTGAGACGCTTGGCGGATCACAACCTCGTGGACGAGGACGAGA AAAAACAGGGAACCATCAAGCAACAGCTCCGTAGATACGCAAAGGAGCAG CGAACTGATTTCGAGCCGCTGTGGAAAATGCACAGGTATGGTGGGAAGCG AAGCTGCGATTTCAATTCTGCGAGAAACCATCAATAGATTGCAGTATGTT GAACTGGCGTTGATATTTGTCCGCGAGTATCGGATTCCTCCCCTGTGACT AAAATATCGTATTGCGACGACCGAATGCGACGATCTCAAACATCCGTTTT CTGATCTTCGGTGTGTGTCCATGTTTTTCTGTACGTGGTCAAATCGCAGC ATTCCCGTGTGCCCCATTATGAAGATTGCCTCGCAGTCATCCGAAATGAC GCCTTGCCAGGGTTCCTTACCACCGAAGAAATATAGCTCTCGGCCTTCTT TTCGCGTACAGCAGTCCGTAGCATCGTGTTGATCCTCGGCACGTTTTATG TTCTGTTCCACGCGGGTGCTGTTGTCGCTGTGAATGCCTTGCAGAGTATA CTGCAAGTCTGGTCACCTGAGCCAGGACTACCTTCGCTTCCTGTGGACGT ACCGCGAGGTCAAGTCCCTAGGACCGGTTGTGGTCCTAACCGAAAGGAAA ATCGAATCTATCATATCGACGATGGTGAGACTGCAGGTCATGTACAAAGC TCGCGGCAAGGGCGACTTTGTGGTGCCGGCCCGTCTCCCAGAATACGGTG ACCAGAGAGTGTTGAACCCAGACAACATTGGGGAGATCGTTGCCGTGATG AAGTGTTCGTTTGGCATAGTCTACCCCCCACCAGGTATTGTTGGGCGTTT CCTTGCCTGGTTGACGCCAGTCGACCGCTACGGGGAATGCTGGCAGCACG GGGCTTTCGTGAGCTACAATTATCACAAGGTGTTCTTCTTCGAGTCGGAA GACAGCGAGCCCCACGAGGATGGGACAGAGAGCAAGTTCGCTGGCCTTAC GCTCGGGGTCCAAGGGCGACGAGAGGAGGCTCTACCGATTCTTGAAGATC TAAAGGTGTCGTTGACAGAACTGGTGTCGGACAAAACGGACCCGGGCCTT GCTTCGTCGATGTCTTTCGAAGAGCCGGTTGAAACCAAGTCAAACGAGTT ACTGACTCTCCGTTCCCTCCTGGACAACATCGGCGATAGGCTGGAGAAGA TCGAGATGAAGCTCGATGGAGTTGCGAACCAGCTGGTAGAGCAGATGATG TTGCCGGCGAGTGCCAAGCAAGAAGAGTGCCCCTACCCGCGCCTGGTGAT CTTGGTGCCGAAGGCAGAGGAATGCCGGAAACAGGGTCGGATCCAGCGCG AGGGGTGGAACAAGTGGACGGATGCCTGGAAAAAACTGGATGAGTCCGTC GGGTTGCACCAAGAGTTTCGCCTCCGTTTCTTTTGTGAGTACAGCCTCGC CGAAGTACCATGCGGTCCCGACGGGTGTGGATACCTTATCAAGAAGCCGA AGGACTGGGTCAAAAAATGTGTCCCTCTGATGCAGGTGAGGGTTTTTAGG AATTTGGTTTTATTTCGGGTGCGGGTGCAGGGTGCATCCGAGCATCACCA GGATAACGAACTAGTTCGAAGCTTCGTTATTTTTACTTCGCTTCGGCGAC CATCCGATGCTGGTCTGTTTGGCACTGGATTATTTGGCAGCCCTTCCTTT CGTGATCATGCTCGACGTGACGTGAAAATTGCCGCAACAAAGGAGACCCA TGCCGATAGCAACCGCCTTGCCTGTTCCCCATCCCTTGCGTACCTTGCCT AAGGCGTCGTTGTGGGTCTTGCGAGTAGCAGTTGGCATGGTTTCACATGT GGACCTGCCCGTGAACGAAGTGCTGGGCGCTGCCATCAAGGGCACCGGTG AAACACTGCTGGACGGGATAGGCACGGAGGTTCCTAGCACCATCAAAACC GACCAGTCCGCGTTTGGGGAGGGTGTGCCGGTCTCAAAGATGAAGGAGTT TAAAGACCTGCAGGAGCCGGCTTACAAATCCATGTGCGAGTTCATGCGGG AAGTGGAAGCCGAAGCGTCACCTCCTCGGCGTTGGTTTGCGTGTCCTCCG TGCTATCGTGAATCCGGCCCACCCACTGTTTCCTGGAAGGACAGTATGGT GCAAGAGCGGAACGGTCATGGGGGGTGGGCTTGGGTCCTGAGAAAGAATC AGGAGGCATACGTTCGCGCCGGTGGAAACCGAGACACTGCGTCAACGGGT TCGGCTCCAGCCCCGACCTCATGATTTTGAAGCAAATCTCAACTAGGCAG GTGGTCATTGTGGTGGTATCGTCTCCTTTGTGCGGGATTGGGCGTGCCTA TGGTTTTTTGAGAGGGCAAAGAAAAAAGATGCATTCGGCGTTGAATTGTG GCCGGCTGCACTGTAGATGCCGCCGAAGGGAGTGCCCGAGTCCATTTGAT GATACGGAATGGCGAGGGCGTTACCTGGCGGAATGAATGGCGTGAATGTT CGTCGTGGCTACGTAGTAGCATCACGTATTCACCAAATGACTTGAAATCG CAAAGATACCCTTAACGTTGGGCTTGAGAAGAACTCGATATTTTATTTAC AGGTGCCGGACAAAACCTTGGGTAATCTCTGTGAGGCGTTTCCTTACATT GTGTACCGATTTTCGTCGATGTATCACAGGTGCGATCCTGCTTAAGGCTA CATTCGAAGACCGTGATGGGCTGTGGTGCGTTATGGTGCGTTCGTGCTTG CAGAATGCTCTCGTGTCCCTTGTTCGATTATTGTAAATCGAGAGGCGAGC GTCCGGATTTGGCGTCTACAATTTTGAACGGTGGGCATGCTTTGTTACTG CTGAAAATCGTTTTGGAGAGGCGCGGGGTGACCTGGGGTCCGCCCTGAGC GGGCTTCAATGGTTCTTTGTAGGCCGTGGTGGGGGGTCATGCTCGGAGTT GAGTGCAAAGATGTCTCTGTATGGAATGGCAGGGAACACGCCCGTGGACA TATTGGAGCAATCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig858:7511..10826+

>mRNA_L-elsbetiae_contig858.17618.1 ID=mRNA_L-elsbetiae_contig858.17618.1|Name=mRNA_L-elsbetiae_contig858.17618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3642bp|location=Sequence derived from alignment at L-elsbetiae_contig858:7511..10826+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGCTGTCAAGAGGACAACGCCGTGTGTGATGTGGAGCGAAGCAGT
CGCGAAGTTCAGTAGTGCAATGAGTGGAACTCTGCCCGAGTCCGACGACC
CCGGCAAGGTGCTGTTGAGGGCGATGCGGCACCGTGAAGCCGAGGGTGGT
GCACTGTTGTCGCTAGCGGACGCCTCAGCACCTGTGGCAACCGATATGCT
TCACCTGGACCCATCGTGGCTGGTCGAGTTGGTGAGACGCTTGGCGGATC
ACAACCTCGTGGACGAGGACGAGAAAAAACAGGGAACCATCAAGCAACAG
CTCCGTAGATACGCAAAGGAGCAGCGAACTGATTTCGAGCCGCTGTGGAA
AATGCACAGATGGACGCTGTCAAGAGGACAACGCCGTGTGTGATGTGGAG
CGAAGCAGTCGCGAAGTTCAGTAGTGCAATGAGTGGAACTCTGCCCGAGT
CCGACGACCCCGGCAAGGTGCTGTTGAGGGCGATGCGGCACCGTGAAGCC
GAGGGTGGTGCACTGTTGTCGCTAGCGGACGCCTCAGCACCTGTGGCAAC
CGATATGCTTCACCTGGACCCATCGTGGCTGGTCGAGTTGGTGAGACGCT
TGGCGGATCACAACCTCGTGGACGAGGACGAGAAAAAACAGGGAACCATC
AAGCAACAGCTCCGTAGATACGCAAAGGAGCAGCGAACTGATTTCGAGCC
GCTGTGGAAAATGCACAGAGTATACTGCAAGTCTGGTCACCTGAGCCAGG
ACTACCTTCGCTTCCTGTGGACGTACCGCGAGGTCAAGTCCCTAGGACCG
GTTGTGGTCCTAACCGAAAGGAAAATCGAATCTATCATATCGACGATGGT
GAGACTGCAGGTCATGTACAAAGCTCGCGGCAAGGGCGACTTTGTGGTGC
CGGCCCGTCTCCCAGAATACGGTGACCAGAGAGTGTTGAACCCAGACAAC
ATTGGGGAGATCGTTGCCGTGATGAAGTGTTCGTTTGGCATAGTCTACCC
CCCACCAGGTATTGTTGGGCGTTTCCTTGCCTGGTTGACGCCAGTCGACC
GCTACGGGGAATGCTGGCAGCACGGGGCTTTCGTGAGCTACAATTATCAC
AAGGTGTTCTTCTTCGAGTCGGAAGACAGCGAGCCCCACGAGGATGGGAC
AGAGAGCAAGTTCGCTGGCCTTACGCTCGGGGTCCAAGGGCGACGAGAGG
AGGCTCTACCGATTCTTGAAGATCTAAAGGTGTCGTTGACAGAACTGGTG
TCGGACAAAACGGACCCGGGCCTTGCTTCGTCGATGTCTTTCGAAGAGCC
GGTTGAAACCAAGTCAAACGAGTTACTGACTCTCCGTTCCCTCCTGGACA
ACATCGGCGATAGGCTGGAGAAGATCGAGATGAAGCTCGATGGAGTTGCG
AACCAGCTGGTAGAGCAGATGATGTTGCCGGCGAGTGCCAAGCAAGAAGA
GTGCCCCTACCCGCGCCTGGTGATCTTGGTGCCGAAGGCAGAGGAATGCC
GGAAACAGGGTCGGATCCAGCGCGAGGGGTGGAACAAGTGGACGGATGCC
TGGAAAAAACTGGATGAGTCCGTCGGGTTGCACCAAGAGTTTCGCCTCCG
TTTCTTTTGTGAGTACAGCCTCGCCGAAGTACCATGCGGTCCCGACGGGT
GTGGATACCTTATCAAGAAGCCGAAGGACTGGGTCAAAAAATGTGTCCCT
CTGATGCAGAGTATACTGCAAGTCTGGTCACCTGAGCCAGGACTACCTTC
GCTTCCTGTGGACGTACCGCGAGGTCAAGTCCCTAGGACCGGTTGTGGTC
CTAACCGAAAGGAAAATCGAATCTATCATATCGACGATGGTGAGACTGCA
GGTCATGTACAAAGCTCGCGGCAAGGGCGACTTTGTGGTGCCGGCCCGTC
TCCCAGAATACGGTGACCAGAGAGTGTTGAACCCAGACAACATTGGGGAG
ATCGTTGCCGTGATGAAGTGTTCGTTTGGCATAGTCTACCCCCCACCAGG
TATTGTTGGGCGTTTCCTTGCCTGGTTGACGCCAGTCGACCGCTACGGGG
AATGCTGGCAGCACGGGGCTTTCGTGAGCTACAATTATCACAAGGTGTTC
TTCTTCGAGTCGGAAGACAGCGAGCCCCACGAGGATGGGACAGAGAGCAA
GTTCGCTGGCCTTACGCTCGGGGTCCAAGGGCGACGAGAGGAGGCTCTAC
CGATTCTTGAAGATCTAAAGGTGTCGTTGACAGAACTGGTGTCGGACAAA
ACGGACCCGGGCCTTGCTTCGTCGATGTCTTTCGAAGAGCCGGTTGAAAC
CAAGTCAAACGAGTTACTGACTCTCCGTTCCCTCCTGGACAACATCGGCG
ATAGGCTGGAGAAGATCGAGATGAAGCTCGATGGAGTTGCGAACCAGCTG
GTAGAGCAGATGATGTTGCCGGCGAGTGCCAAGCAAGAAGAGTGCCCCTA
CCCGCGCCTGGTGATCTTGGTGCCGAAGGCAGAGGAATGCCGGAAACAGG
GTCGGATCCAGCGCGAGGGGTGGAACAAGTGGACGGATGCCTGGAAAAAA
CTGGATGAGTCCGTCGGGTTGCACCAAGAGTTTCGCCTCCGTTTCTTTTG
TGAGTACAGCCTCGCCGAAGTACCATGCGGTCCCGACGGGTGTGGATACC
TTATCAAGAAGCCGAAGGACTGGGTCAAAAAATGTGTCCCTCTGATGCAG
GCGTCGTTGTGGGTCTTGCGAGTAGCAGTTGGCATGGTTTCACATGTGGA
CCTGCCCGTGAACGAAGTGCTGGGCGCTGCCATCAAGGGCACCGGTGAAA
CACTGCTGGACGGGATAGGCACGGAGGTTCCTAGCACCATCAAAACCGAC
CAGTCCGCGTTTGGGGAGGGTGTGCCGGTCTCAAAGATGAAGGAGTTTAA
AGACCTGCAGGAGCCGGCTTACAAATCCATGTGCGAGTTCATGCGGGAAG
TGGAAGCCGAAGCGTCACCTCCTCGGCGTTGGTTTGCGTGTCCTCCGTGC
TATCGTGAATCCGGCCCACCCACTGTTTCCTGGAAGGACAGTATGGTGCA
AGAGCGGAACGGTCATGGGGGGTGGGCTTGGGTCCTGAGAAAGAATCAGG
AGGCATACGTTCGCGCCGGTGGAAACCGAGACACTGCGTCAACGGGTTCG
GCTCCAGCCCCGACCTCATGAGCGTCGTTGTGGGTCTTGCGAGTAGCAGT
TGGCATGGTTTCACATGTGGACCTGCCCGTGAACGAAGTGCTGGGCGCTG
CCATCAAGGGCACCGGTGAAACACTGCTGGACGGGATAGGCACGGAGGTT
CCTAGCACCATCAAAACCGACCAGTCCGCGTTTGGGGAGGGTGTGCCGGT
CTCAAAGATGAAGGAGTTTAAAGACCTGCAGGAGCCGGCTTACAAATCCA
TGTGCGAGTTCATGCGGGAAGTGGAAGCCGAAGCGTCACCTCCTCGGCGT
TGGTTTGCGTGTCCTCCGTGCTATCGTGAATCCGGCCCACCCACTGTTTC
CTGGAAGGACAGTATGGTGCAAGAGCGGAACGGTCATGGGGGGTGGGCTT
GGGTCCTGAGAAAGAATCAGGAGGCATACGTTCGCGCCGGTGGAAACCGA
GACACTGCGTCAACGGGTTCGGCTCCAGCCCCGACCTCATGA
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