mRNA_L-elsbetiae_contig858.17618.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig858.17618.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI) HSP 1 Score: 617 bits (1591), Expect = 4.010e-202 Identity = 346/655 (52.82%), Postives = 437/655 (66.72%), Query Frame = 2
Query: 2 EFPRGFSFPAVDQVVPNAWIKAYDAMDAVKRTTPCVMWSEAVAKFSSAMSGTLPESDDPGKVLLRAMRHREAEGGALLSLADASAPVATDMLHLDPSWLVELVRRLADHNLVDEDEKKQGTIKQQLRRYAKEQRTDFEPLWKMHRVYCKSGHLSQDYLRFLWTYREVKSLGPVVVLTERKIESIISTMVRLQVMYKARGKGDFVVPARLPEYGDQRVLNPDNIGEIVAVMKCSFGIVYPPPGIVGRFLAWLTP-VDRYGECWQHGAFVSYNY----HKVFFFESEDSEPHEDGTESKFAGLTLGVQGRREEALPILEDLKVSLTELVSDKTD--PGLASSMSFEEPVETKSNELLTLRSLLDNIGDR-----------------LEKIEMKLDGVANQLVEQMMLPASAKQEECPYPRLVILVPKAE--ECRKQGRIQREGWNKWTDAWKKLDESVGLHQEFRLRFFCEYSLAEVPCGPDGCGYLIKKPKDWVKKCVPLMQASLWVLRVAVGMVSHVDLPVNEVLGAAIKGTGETLLDGIGTEVPSTIKTDQ-SAFGEGVPVSKMKEFKDLQEPAYKSMCEFMREVEAEASPPRRWFACPPCYRESGPPTVSWKDSMVQERN-GHGGWAWVLRKNQEAYVRAGGNRDTASTGSAP 1882
E P GF+FPAVDQ V AWI+AYDAMD +K T PCV+WS AV +F MSG P + D GKVLLRAM+HREAEGG LLSLAD SAPVA+DMLHLDPSWL+ELVRRLADHNLVD+D+KK+G+++Q LR YAK Q PL+ +H VYC+SG L++ YLRFLW +R+++ GP V LT+ + ESI+STM RL VMY AR + VVPARL EYGDQR+ PD + +V ++CSFG VYPPPGIVGRFLAW V YGECWQHGAF SY Y + VF +ESE E H+DGT FAGLTLG+QG +A +LE+L+ SL LVSD PGL M F E +S+ L+ L S+LD LE+ KL G+ QL+EQ +LPAS E+ YPRLV++ P+ E E RIQR GW++WT A ++ G H+ FR+ F C + L+EVPCGP G G+ IK PKDWVK+ +PLMQ SLW+LRVAVG VS+VDLP+N+VLGA + TG LL+G+G +VP I + F EG ++M FKDL+ +Y+ +C+FMR+V E+SPP+ C PC+R V W+D MVQ RN G AWVL+ N++A++R G +T AP
Sbjct: 526 ECPTGFNFPAVDQTVSKAWIEAYDAMDVLKGTAPCVLWSRAVEEFRRKMSGIPPVAGDAGKVLLRAMQHREAEGGVLLSLADDSAPVASDMLHLDPSWLIELVRRLADHNLVDKDKKKRGSLEQGLRVYAKRQGLAAAPLFDIHNVYCRSGRLNRAYLRFLWMHRKIEGPGPTVDLTDPEFESIVSTMERLLVMYTARDADNLVVPARLQEYGDQRI--PDRLTNMVLKIECSFGQVYPPPGIVGRFLAWSAQQVADYGECWQHGAFFSYKYQYARYDVFLYESEVEEAHQDGTVDMFAGLTLGIQGPPPQAAEVLEELRKSLESLVSDSAYGYPGLVGPMYFRPAEEIESSLLVRLGSVLDXXXXXXXXXXXXXXXXXXXXXSLEETVRKLGGIVTQLLEQDLLPAS--DEQSAYPRLVLVRPELETAEDMTHERIQRAGWDRWTKALSEM----GFHK-FRVHFLCGHDLSEVPCGPGGRGFPIKHPKDWVKQWLPLMQVSLWMLRVAVGAVSNVDLPLNKVLGAFVMATGAELLEGVG-KVPDRISSAALPVFSEGATRAEMDGFKDLRGKSYEGLCKFMRDV--ESSPPQCLSGCLPCHRTLA--VVDWRDHMVQVRNPSTGRRAWVLKTNEKAFLREHGG--APATAGAP 1164
BLAST of mRNA_L-elsbetiae_contig858.17618.1 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI) HSP 1 Score: 303 bits (776), Expect = 5.150e-83 Identity = 218/652 (33.44%), Postives = 337/652 (51.69%), Query Frame = 2
Query: 17 FSFPAVDQVVPNAWIKAYDAMDAV--KRTTPCVMWSEAVAKFSSAMSGTLPES-----------DDPGKVLLRAMRHREAEGGALLSLADASAPVATDMLHLDPSWLVELVRRLADHNLVDEDEKKQGTIKQQLRRYAK---EQRTDFEPLWKMHRVYCKSGHLSQDYLRFLWTYREVKSLGPVV--VLTERKIESIISTMVRLQVMYKARGKGD-----FVVPARLPEYGDQRVLNPD-NIGEIVAVMKCSFGIVYPPPGIVGRFLAWLTP-VDRYGECWQHGAFVSY----NYHKVFFFESEDSEPHEDGTESKFAGLTLGVQGRREEALPILEDLKVSLTELVSDKTD--PGLASSMSFEEPVETKSNELLTLRSLLDNIGDRLEKIEMKLDGVANQLVEQMM--LPASAKQEECPYPRLVILVP---------KAEECRKQGRIQ-REGWNKWTDAWKKLDESVGLHQEFRLRFFCEYSLAEVPCGPDGCGYLIKKPKDWVKKCVPLMQASLWVLRVAVGMVSHVDLPVNEVLGAAIKGTGETLLDGIGTEVPSTIKTDQSAFGEGVPVSKMKEFKDLQEPAYKSMCEFMREVEAEASPPR-RWFACPPCYR----ESGPPTVSWKDSMVQERNGHGGWAWVLRKNQE 1828
FSFPAV ++P AW+ A A++A+ ++ TP V+W +AV F E +D L AM+HREAEGG +LSL D S+P +DM+H+DP WL+ELVRR+ DHNLVD+ KKQ I Q+L Y + + + ++ L + H + + G L++DYLRFLW +R+++ G L + +S++ TM++ +Y + G+ +VPARLPE+G+ +L +GE+V F + P GI+GRFLA+ + + G+CWQHGA + + N H V E+ + G +S F + + V+G+ EA +L ++ L L+ D PGL + FEE T+S++ + +L KI L+ + V P+ E PYPRLV+L P +AEE G IQ R W++W D + G +F L F CE +E+PCGP G G+ + P PL+Q +LW++++AVG V+ VDLP+++VL A + T +L+ ++ + D+ EG FK+L PAYK++C+FM + E P R +C P YR E P W+ M +NG G ++WV + +++
Sbjct: 1505 FSFPAVATILPAAWVDAIAAVEALHKEKGTPYVLWGDAVRAFQRYFQEKHKEEGKEERNKPLSDEDAATNLKEAMKHREAEGGVILSLRDESSPAQSDMIHVDPRWLIELVRRVTDHNLVDK--KKQNKILQELLEYDRTRPDTLSGYKNLCETHACFIRQGRLNRDYLRFLWVHRKLEVEGDYAGAQLDKDAFDSMVDTMIKYLFIYPSHGECSNAEDCHIVPARLPEHGNDNILEESIGLGEVVVGKTAWFLRSHAPTGIIGRFLAFTSSRFEASGKCWQHGAHIQWKKDSNEHDVLLCETTIEKDIIPG-QSTFPAIAICVKGKTAEAKGVLREVGEQLLSLLQDNIHGYPGLRLPI-FEELNITQSDQFQV--HFERYLATQLAKI---LEDTRRESVRMFRAAFPSYGDPVELPYPRLVLLKPVETTSIQETQAEES-VNGAIQLRRTWDRWIDLCRS-----GGSCDFVLVFLCERDFSEIPCGPQGKGFRVHNPGSLFNTLKPLLQGALWLVKIAVGTVASVDLPLHDVLEAFLHATAAEVLEAAPSQFSPSATLDEGQ-QEG--------FKELHGPAYKALCDFM--TKEEFGPEEARCESCLPWYRPRVHEPIPSEFDWRSHMEMIKNGIG-YSWVRKSSEQ 2129
BLAST of mRNA_L-elsbetiae_contig858.17618.1 vs. uniprot
Match: A0A6H5JR01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR01_9PHAE) HSP 1 Score: 261 bits (667), Expect = 1.500e-72 Identity = 195/636 (30.66%), Postives = 319/636 (50.16%), Query Frame = 2
Query: 17 FSFPAVDQVVPNAWIKAYDAMDAVKRTTPCVMWSEAVAKFSSAMSGTLPESDDPGKVLLR-AMRHREAEGGALLSLADASAPVATDMLHLDPSWLVELVRRLADHNLVDEDEKKQGTIKQQLRRYAK---EQRTDFEPLWKMHRVYCKSGHLSQDYLRFLWTYREVKSLGPV--VVLTERKIESIISTMVRLQVMYKARGK-----GDFVVPARLPEYGDQRVLNPDNIG--EIVAVMKCSFGIVYPPPGIVGRFLAWLTP-VDRYGECWQHGAFVSY----NYHKVFFFESEDSEPHEDGTESKFAGLTLGVQGRREEALPILEDLKVSLTELVSDKTDPGLASSMSFEEPVETKSNELLTLRSLLDNIGDRLEKIEMKLDGVANQLVEQMMLPASAKQEECPYPRLVILVPKAEECRKQGRIQ--------REGWNKWTD-AWKKLDESVGLHQEFRLRFFCEYSLAEVPCGPDGCGYLIKKPKDWVKKCVPLMQASLWVLRVAVGMVSHVDLPVNEVLGAAIKGTGETLLDGIGTEVPSTIKTDQSAFGEGVPVSKMKEFKDLQEPAYKSMCEFMREVE-----AEASPPRRWFACPPCYRESGPPTVSWKDSMVQERNGHGGWAWVLRKNQE 1828
FSFPAV ++P+AW+ DA+ A +R + + K P SD+ L+ AM+HREAEGG +LSL + S+P +DM+H+DP WL++LVRR+ DHNLVD+ K + I ++L Y + + + ++ L + H + + G L++ YLRFLW +R+++ G V L +S++ TM++ +Y + G+ G ++VPARLPE G VL ++IG E+V F + P GI+G FLA+ + + GECWQHGA + + N H + E+ + G + + V+G+ EA +L ++ L L+ D + FE + TK L ++L++ R E + M + P+ + E YPRLV+L P ++ +++ R W++W D W G +F L CE +E+PCGP G G+ + P PL+Q +LW++++AVG V+ V LP+++VL A + T +L+ ++ + D+ EG FK+L PAYK++C+FMR+ E A+ P W P E W+ M + +NG G ++WV + +++
Sbjct: 77 FSFPAVATILPSAWVLWGDAVKAFQR------YFQEKHKEEREDERNKPLSDEEASSNLKEAMKHREAEGGVILSLREESSPAQSDMIHVDPRWLIDLVRRVTDHNLVDK--KNEHEILKELLEYGRTRPDTLSGYKNLCETHTCFIRQGRLNRKYLRFLWVHRKLEVEGGYAGVQLENDTFDSMVDTMIKYLFIYPSHGECSKAEGFYIVPARLPEIGKDNVLE-ESIGLDEVVVGKTAWFLRSHAPTGIIGCFLAFTSSRFEASGECWQHGAHIQWKKDSNEHDMLLCETTIEKDIIPGP-GTLPAIAICVKGKTAEAKGVLREVGEQLLSLLKDVIH------VHFERYLATK------LATILEDT--RRESVRMF----------RAAFPSYGEHVELLYPRLVLLKPVETTSIQETQVESVSGAKKLRRTWDRWIDLCWS------GGSCDFVLVILCERDFSEIPCGPQGKGFRVHNPGSLFNTLKPLLQGALWLVKIAVGTVASVYLPLHDVLEAFLHATAAEVLEAAPSQFSPSATLDEGQ-QEG--------FKELHGPAYKALCDFMRKEEFGPEEAQCCPCLPWHR--PRVHEPILSEFDWRSHMYKIKNGVG-YSWVRKSSEQ 660
BLAST of mRNA_L-elsbetiae_contig858.17618.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE) HSP 1 Score: 171 bits (432), Expect = 5.170e-40 Identity = 160/610 (26.23%), Postives = 279/610 (45.74%), Query Frame = 2
Query: 14 GFSFPAVDQVVPNAWIKAYDAMDAVKRTT--------------------------PCVMWSEAVAKFSSAMSGTLP----ESDDPGKVLLRAMRHREAEGGALLSLADASAPVATDM-------LHLDPSWLVELVRRLADHNLVDEDEKKQGTIKQQLRRYAKEQRTDFEPLWKMHRVYCKSGHLSQDYLRFLWTYREVK------SLGPVVVLTERKIESIISTMVRLQVMYKARGKGD-FVVPARLPEYG----DQRVLNPDNIGEIVAVMKCSF-GIVYPPPGIVGRFLAWLTPVD-RYGECWQHGAFVSYNYHKVFFFESEDSEPHEDGTESKFAGLTLGVQGRREEALPILEDLKVSLTELVSD------------------------KTDPGLASSMSFE--EPVETKSNELLTLRSLLDNIGDRLEK---------------IEMKLDGVANQLVEQMMLPASAKQEECPYPRLVIL----VPKAEECRKQGRIQREGWNKWTDAWKKLDESVG-LHQEFRLRFFCEYSLAEVPCGPDGCGYLIK--KPKDWVKKCVPLMQASLWVLRVAVGMVSHVD-LPVNEVLGAAIKGTGETLLDGIG 1546
G+SFP+V+ VP + A ++AV+R P V++ EA+++F ++G P ++ + +V L A++ E +G LL+ AD + DM +H++P+W +L+RR+ D L+D + +Q + ++R D L K H + +G L++ Y+RFLW R+++ + P + ++E I +I+ +++ ++ M++ R D ++VP+ LP++ D + L +G + + F G PPG++ R LAW D R CW+ G S+ H V +E H D + +G E+A LED+ L +LV D +T GL + + E E + K EL LD+I +EK + ++LD +A E +++ A +++ P PRL+++ VP++++ R +RE + +L G Q +R+RF C Y L+ CG DG GY ++ K W++K +P++Q +LW +RV V +VS D LPV++V+G + GE IG
Sbjct: 273 GYSFPSVNNEVPEPHLLAVATLEAVRRGVSLRGSGGEPAEVARRLNAGTKVGEGHPFVLFPEALSRFLE-VAGEKPMFGGKATEGARVFLAAIKLHEVQGAILLTRADGGGEME-DMASEEHLVIHMNPAWFADLIRRIVDVRLLDPAQARQEKVADLIKRQPPASVGD---LSKQHHRFFLAGELNRRYMRFLWKDRDLELGPASPNTAPPLEMSEEDITTIVESLLDVRFMFRVRQNEDHYIVPSCLPDHVGCDMDPKKLMELEVGGAIFSRRLEFVGAHSVPPGLIPRLLAWCGQGDERITACWKRGVCFSFKEHLVLLYE------HRDAGRAVIECHAMG-SAHDEKAWRTLEDVVTELGQLVGDAKYGFPGVGLFFVGGGDKQKVSSAETLEGLLTRFTGELKEQINVKVEEL---GQKLDDIAGGVEKHLRKGQEEMASLREDVSLQLDCIAAVTSECLLVSA---EKDIPCPRLIMVSEDDVPESDQSR-LSHFRREMMD-------QLFLGKGQTPQHYRIRFLCAYDLSAATCGEDGLGYKVEIGSWKGWLQKYMPVIQVALWTVRVGVSVVSRADILPVDDVMGKLREVAGEEAATMIG 856
BLAST of mRNA_L-elsbetiae_contig858.17618.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE) HSP 1 Score: 142 bits (358), Expect = 7.420e-31 Identity = 150/609 (24.63%), Postives = 266/609 (43.68%), Query Frame = 2
Query: 14 GFSFPAVDQVVPNAWIKAYDAMDAVKRTT-------------------------PCVMWSEAVAKF------SSAMSGTLPESDDPGKVLLRAMRHREAEGGALLSLADASA------PVATD--MLHLDPSWLVELVRRLADHNLVD--EDEKKQGTIKQQLRRYAKEQRTDFEPLWKMHRVYCKSGHLSQDYLRFLWTYREVKSLGPV--------VVLTERKIESIISTMVRLQVMYKAR-GKGDFVVPARLPEYG----DQRVLNPDNIGEIVAVMKCSFGIVYP-PPGIVGRFLAWLTPVD-RYGECWQHGAFVSYNY-HKVFFFESEDSEPHEDGTESKFAGLTLGVQGRREEALPILEDLKVSLTELVSDKTD--PGLASSMSFEEPVE----TKSNELLTLRS-----LLDNIGDRLEKIEMKLDGVA------------------NQLVEQMMLPASAK----------------QEECPYPRLVILVPKAEECRKQGRIQREGWNKWTDAWKKLDESVGLHQEFRLRFFCEYSLAEVPCGPDGCGYLIKKP--KDWVKKCVPLMQASLWVLRVAVGMVSHVD-LPVNEVLGAAIKGTGE 1525
G+SFP+V+ VP + A ++AV+R P +++ EA++ F S G E + + L A+ E +G L++ AD P + ++H++P+W +L+RR+ D L+D + EK IK+Q E L K H + +G +S+ Y++FLW R+++ LGP ++E I +++ +++ ++ M++ R K ++VP+ LP++ D + L ++G + K G P PPG++ R LAW + D R CW+ G ++N H V +E ++ S +G E+A L+D+ L LV D PG+ + F+ VE T + EL L S L D++ +++ K + +A N ++Q+ S K +++ P PRL++++ R+ + D + + Q +R+RF C Y L CG DG GY ++ ++W+K C+P+++ SLW+LRV + +V+ D LPV+ V+ + GE
Sbjct: 441 GYSFPSVNSEVPEPHLLAVATLEAVRRGATLRGSGGDPAEVVRRLDGEKLDEGQPFILFPEALSLFLEVAGEKSLFGGNATEGE---QAFLAAITLHERQGAILVTRADGGGEKEDMKPASEQHLVIHVNPAWFADLIRRIVDVRLLDPAQQEKLAEVIKRQSPASVAE-------LSKQHGRFFLAGEVSKRYMKFLWKERDLE-LGPASPSLAAPPFEMSEETITTMVESLLAVRFMFRVRHNKDHYIVPSCLPDHVGCTVDAKKLLGLDVGGAIFSRKLQLGGEQPVPPGLIPRLLAWCSQGDARITTCWKRGVCFAFNRKHLVLLYEHR-----KEAGRSVIECHAMG-SAHNEKAGGTLDDVVAELRRLVGDPKYGFPGIW--LFFDGGVEHQKATSAGELDKLLSRFAGELKDHMNVNFKELARKSNVIAGGVERHLRKGQEEMATSFNHQIQQLGQDMSRKLDCIAAVTSKCLLVSVEKDIPCPRLIMVLEDVSPGSALSRLSHFRRD-MVDKLLRREGEGPAPQCYRIRFLCAYDLTAGTCGKDGLGYKVEIQGWQEWLKACLPVIKVSLWLLRVGISVVTRADVLPVDGVIETLEEVAGE 1029 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig858.17618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig858.17618.1 >prot_L-elsbetiae_contig858.17618.1 ID=prot_L-elsbetiae_contig858.17618.1|Name=mRNA_L-elsbetiae_contig858.17618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=607bp MDAVKRTTPCVMWSEAVAKFSSAMSGTLPESDDPGKVLLRAMRHREAEGGback to top mRNA from alignment at L-elsbetiae_contig858:7511..10826+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig858.17618.1 ID=mRNA_L-elsbetiae_contig858.17618.1|Name=mRNA_L-elsbetiae_contig858.17618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3316bp|location=Sequence derived from alignment at L-elsbetiae_contig858:7511..10826+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig858:7511..10826+ >mRNA_L-elsbetiae_contig858.17618.1 ID=mRNA_L-elsbetiae_contig858.17618.1|Name=mRNA_L-elsbetiae_contig858.17618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3642bp|location=Sequence derived from alignment at L-elsbetiae_contig858:7511..10826+ (Laminarionema elsbetiae ELsaHSoW15)back to top |