prot_L-elsbetiae_contig12036.1725.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig12036.1725.1
Unique Name	prot_L-elsbetiae_contig12036.1725.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	56

Homology

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BLAST of mRNA_L-elsbetiae_contig12036.1725.1 vs. uniprot
Match: D7FSH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH6_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.270e-31
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0

Query:    1 MPRAGGGHDDDHPHLVFETAKAPFTKFSAGLIVGGGVFAGIGIVVGAITHQNYKHG 56
            MPRAGGGHDD HPHLVFETAK PFTKFSAGLIVGGGVFAGIGIVVGAITHQNYKHG
Sbjct:    9 MPRAGGGHDD-HPHLVFETAKEPFTKFSAGLIVGGGVFAGIGIVVGAITHQNYKHG 63

[Close]

BLAST of mRNA_L-elsbetiae_contig12036.1725.1 vs. uniprot
Match: A0A6H5JHE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE0_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.620e-28
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 0

Query:    1 MPRAGGGHDDDHPHLVFETAKAPFTKFSAGLIVGGGVFAGIGIVVGAITHQNYKHG 56
            MPRAGGGHDD HPHLVF+TAK PFTKFSAGL+VGG VF+GIGIVVGA+THQNYKHG
Sbjct:   26 MPRAGGGHDD-HPHLVFDTAKEPFTKFSAGLLVGGLVFSGIGIVVGAVTHQNYKHG 80

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig12036.1725.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig12036.1725.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FSH6_ECTSI	1.270e-31	96.43	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JHE0_9PHAE	1.620e-28	87.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 27..48
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 49..56
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..26
None	No IPR available	TMHMM	TMhelix		coord: 27..49

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig12036	contig	L-elsbetiae_contig12036:2822..5015 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig12036.1725.1	mRNA_L-elsbetiae_contig12036.1725.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig12036 2822..5036 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig12036.1725.1 ID=prot_L-elsbetiae_contig12036.1725.1|Name=mRNA_L-elsbetiae_contig12036.1725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
MPRAGGGHDDDHPHLVFETAKAPFTKFSAGLIVGGGVFAGIGIVVGAITH
QNYKHG