mRNA_L-elsbetiae_contig12036.1725.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12036.1725.1
Unique NamemRNA_L-elsbetiae_contig12036.1725.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12036.1725.1 vs. uniprot
Match: D7FSH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH6_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.290e-35
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:    1 RTLVTRSMPRAGGGHDDDHPHLVFETAKAPFTKFSAGLIVGGGVFAGIGIVVGAITHQNYKHG 189
            RT+V+RSMPRAGGGHDD HPHLVFETAK PFTKFSAGLIVGGGVFAGIGIVVGAITHQNYKHG
Sbjct:    2 RTIVSRSMPRAGGGHDD-HPHLVFETAKEPFTKFSAGLIVGGGVFAGIGIVVGAITHQNYKHG 63
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BLAST of mRNA_L-elsbetiae_contig12036.1725.1 vs. uniprot
Match: A0A6H5JHE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 4.070e-33
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 RTLVTRSMPRAGGGHDDDHPHLVFETAKAPFTKFSAGLIVGGGVFAGIGIVVGAITHQNYKHG 189
            RT+VTRSMPRAGGGHDD HPHLVF+TAK PFTKFSAGL+VGG VF+GIGIVVGA+THQNYKHG
Sbjct:   19 RTIVTRSMPRAGGGHDD-HPHLVFDTAKEPFTKFSAGLLVGGLVFSGIGIVVGAVTHQNYKHG 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12036.1725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSH6_ECTSI1.290e-3593.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHE0_9PHAE4.070e-3387.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12036contigL-elsbetiae_contig12036:2822..5036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_003770.1
Exons2
Model size189
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12036.1725.1prot_L-elsbetiae_contig12036.1725.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12036 2822..5015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815404.1844723-CDS-L-elsbetiae_contig12036:2821..29471622815404.1844723-CDS-L-elsbetiae_contig12036:2821..2947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12036 2822..2947 -
1691682882.9595952-CDS-L-elsbetiae_contig12036:2821..29471691682882.9595952-CDS-L-elsbetiae_contig12036:2821..2947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12036 2822..2947 -
1622815404.1970685-CDS-L-elsbetiae_contig12036:4973..50151622815404.1970685-CDS-L-elsbetiae_contig12036:4973..5015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12036 4974..5015 -
1691682882.9768264-CDS-L-elsbetiae_contig12036:4973..50151691682882.9768264-CDS-L-elsbetiae_contig12036:4973..5015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12036 4974..5015 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815404.2108235-UTR-L-elsbetiae_contig12036:5015..50361622815404.2108235-UTR-L-elsbetiae_contig12036:5015..5036Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12036 5016..5036 -
1691682882.9853563-UTR-L-elsbetiae_contig12036:5015..50361691682882.9853563-UTR-L-elsbetiae_contig12036:5015..5036Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12036 5016..5036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12036.1725.1

>prot_L-elsbetiae_contig12036.1725.1 ID=prot_L-elsbetiae_contig12036.1725.1|Name=mRNA_L-elsbetiae_contig12036.1725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
MPRAGGGHDDDHPHLVFETAKAPFTKFSAGLIVGGGVFAGIGIVVGAITH
QNYKHG
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mRNA from alignment at L-elsbetiae_contig12036:2822..5036-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12036.1725.1 ID=mRNA_L-elsbetiae_contig12036.1725.1|Name=mRNA_L-elsbetiae_contig12036.1725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2215bp|location=Sequence derived from alignment at L-elsbetiae_contig12036:2822..5036- (Laminarionema elsbetiae ELsaHSoW15)
AGGACGCTCGTGACGCGGTCTATGCCCAGGGCTGGCGGGGGACACGACGA
CGACCACCCTCACGTGAGTTCGCCATTTTTTTGCCGCGACGGGGAGCGCG
GGAGAAACAGACACTGGAGACATTATTTTGCAGGATGTACCTACACAACG
AAACGAATTCCTGCAGGACTTCTCTCTCTCTCTCTGATTGGCTGACAACT
GCCCGCGTTGTTTTTTCCACGGCCGCCTGCCAAACGCGCGAGGCACTTTT
AGGCCCTCGTTTCGGCCAGAAGGTCAGGGGCTACGGGTTTGGGTAAGGGT
TGGGGTTGGGTTGGGTCGGTGCGGCTATTATGTACATATATACGTCGGAC
AAAAAGAGTGTGCCAAAACGCTCTTCTAGGGGCGTTTTGTAGCCTGCAGG
AATTCGTTGCAGGTGTGCATCCTGCAAAAATAGGGTCTCCCGCCAAAGGG
GAGGGGGGGGCTCTTGTGGTTTGGCCTGTTAAGGGCCTGTCTCTTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTTCCCATTTATTTTGGCGA
CAGTCCCCCCAAGTGGAGACGTGTACCACACCTTGCGGTGTACTTAGAGG
CACTACACTTTGCAGTGCATTTTGTCTGTACACCTAGAACCAACCGGGGT
CGCACAGGAGGAGGTGAACACTGGGGCTTTTATTTTCTTTTTTTGCCCCA
TCTTCCTCCTGCGGTTCTTGCCTTGGGGTTTTATCGCGAGAAGGGTTCAG
CTGTCCCTTTCCCTCGTCAACGTGACTACGTCGAAGGGTTACAGAGTATT
TAGGGCCGGCATGGCATTACTGTGGGCTGAACGGGGACGGCTCGGCAAGT
CGCAGCGCACCGTTTTCACGCACTCTTTTCTTGGGCACCCTTGTCGCTCC
CGTAGTACGTACATATGGAAGGCATCTATCCATCTAGTTTTGGCGTGCTT
TTTTTTGTGGATTTTTGGTGTGTTGCTTTTGTGTTGAACCCCCCTGTCCC
TCCCTGTGTTCTGGAACTAGCACTGAGAGCATCTCTGTCCTATGTAGTAG
AAGTATATACATTTGGGGAGGGCCTACCGGATGTGTTGGTTTGGTGGCGA
AGCATAAACTTACATACGGCCACTCTTGTTACCTCGCATGTGTATGTATT
TTTTTCTTACGGATACCGACATGTTTACCAGCGCTCGGACGATATATAAA
TATTCCCTGCCCCAAACCAAATAATTAATTAATTAAAAAAACGCACTAGA
CAGATAATATATTAACATGATAAGACTATTGCCTGCCCCAAACCAAATAA
TAATTAATTAGTAAATTGTTTTCCCTTTCTTATTTTTTCTTACGGGTAGA
TACCCACACGTTTACCAGCGCTCGGACGAGGGTCCGGGCGAATTTAGTAC
TGTAGCAGCGCACCTTTTTCGGTCGCTGCGTAGTAACCGCGATGGTATGT
TTTTTCTCTTTACCGTGTGCTGTGTCTATCCTGGGCACAGGTACCGTAGT
GATAGCCCCCCTGCGAGTGTTAGCAGGCTCTACAAGACAATAATGTTGTC
ATTTTGTGTGTCGGGCTGTACTCGTGGGAGGATAGAAGGTTACGTGTGTG
CATGGTGGGAGAGGTATGATGACGTGTGCGTGGGAATGCGCATGTGAAAC
GGGGTTGCGTTATTTGTCACACGACGGTGCGCGTTCGTCAGGGTTCACCT
TGGTGTAGAAGCTTGGTTGTGCGTAACTCTCACCTGTTCAGCAGCAGGGT
GTATGCTGCTGTCGTGGGCTGAGTTTGCTTGGAGGAGAGGCAGGTAAATA
GGTGCCTGGTTTCTTACGTTTTCTCTCTCTGTACATATGATGGCTCTTCG
GACGGTGCATTGTCACTCAGCACGACAGAGAGTATATACGTCGGGGTGCC
CTTGTGTGTCAAGATTGGCTGCTGTGGTCGTGTAAGGGTACATAAAACAA
GAATTAAACCTGCAAGTACGTTGCGAGCCGTTTTGAAAACCCCTTTTCCC
GCTTGTTTCGAGCCCATTGCCCTCGTTCTGTGTTTTTTTTTTTTTTTGTG
TGTCCGACTGAACATGCTGATCTCACCCTTTTTTTACAGTTGGTGTTCGA
GACGGCAAAGGCTCCCTTCACCAAGTTTAGCGCGGGTCTGATCGTGGGTG
GAGGCGTGTTTGCGGGGATCGGCATCGTTGTTGGCGCCATCACCCACCAG
AACTACAAGCACGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12036:2822..5036-

>mRNA_L-elsbetiae_contig12036.1725.1 ID=mRNA_L-elsbetiae_contig12036.1725.1|Name=mRNA_L-elsbetiae_contig12036.1725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig12036:2822..5036- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCAGGGCTGGCGGGGGACACGACGACGACCACCCTCACATGCCCAG
GGCTGGCGGGGGACACGACGACGACCACCCTCACTTGGTGTTCGAGACGG
CAAAGGCTCCCTTCACCAAGTTTAGCGCGGGTCTGATCGTGGGTGGAGGC
GTGTTTGCGGGGATCGGCATCGTTGTTGGCGCCATCACCCACCAGAACTA
CAAGCACGGTTTGGTGTTCGAGACGGCAAAGGCTCCCTTCACCAAGTTTA
GCGCGGGTCTGATCGTGGGTGGAGGCGTGTTTGCGGGGATCGGCATCGTT
GTTGGCGCCATCACCCACCAGAACTACAAGCACGGT
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