mRNA_L-elsbetiae_contig12031.1723.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12031.1723.1
Unique NamemRNA_L-elsbetiae_contig12031.1723.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12031.1723.1 vs. uniprot
Match: D7G8L3_ECTSI (Rad60-SLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L3_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 9.910e-28
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:    1 TKFSALMEGFNSEVGIPPERAHESVFQFDGDKLSPDDTPEGQDMEDDELIEAKFPEDLMDGVQASPTEITLVAQKTKKFARK 246
            TKFSA ME FN +VGIP ERA E VF+FDGDKL+PD TPEG+DME +E+I+AKFP D+M+ VQA+PTE++L A K KK  RK
Sbjct:  172 TKFSAFMEAFNEKVGIPQERASECVFKFDGDKLNPDGTPEGEDMEPEEIIDAKFPADVMNSVQAAPTELSLAAPKKKKVPRK 253
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BLAST of mRNA_L-elsbetiae_contig12031.1723.1 vs. uniprot
Match: A0A6H5L2P0_9PHAE (Rad60-SLD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P0_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.540e-26
Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    1 TKFSALMEGFNSEVGIPPERAHESVFQFDGDKLSPDDTPEGQDMEDDELIEAKFPEDLMDGVQASPTEITLVAQKTKKFARKA 249
            TKFSA ME FN +VGIP ERA E VF+FDGDKL+PD TPEG+DME +E+I+AKFP DLM+ VQA+PTE++L A K KK  RKA
Sbjct:  343 TKFSAFMEAFNEKVGIPQERASEGVFKFDGDKLNPDGTPEGEDMESEEIIDAKFPADLMNSVQAAPTELSLGAPK-KKVPRKA 424
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12031.1723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8L3_ECTSI9.910e-2867.07Rad60-SLD domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L2P0_9PHAE4.540e-2668.67Rad60-SLD domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12031contigL-elsbetiae_contig12031:4663..5556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size456
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12031.1723.1prot_L-elsbetiae_contig12031.1723.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12031 4663..5538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815404.0103493-CDS-L-elsbetiae_contig12031:4662..49981622815404.0103493-CDS-L-elsbetiae_contig12031:4662..4998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12031 4663..4998 -
1691682882.877592-CDS-L-elsbetiae_contig12031:4662..49981691682882.877592-CDS-L-elsbetiae_contig12031:4662..4998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12031 4663..4998 -
1622815404.0255303-CDS-L-elsbetiae_contig12031:5436..55381622815404.0255303-CDS-L-elsbetiae_contig12031:5436..5538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12031 5437..5538 -
1691682882.8868454-CDS-L-elsbetiae_contig12031:5436..55381691682882.8868454-CDS-L-elsbetiae_contig12031:5436..5538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12031 5437..5538 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815404.036003-UTR-L-elsbetiae_contig12031:5538..55561622815404.036003-UTR-L-elsbetiae_contig12031:5538..5556Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12031 5539..5556 -
1691682882.8959465-UTR-L-elsbetiae_contig12031:5538..55561691682882.8959465-UTR-L-elsbetiae_contig12031:5538..5556Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12031 5539..5556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12031.1723.1

>prot_L-elsbetiae_contig12031.1723.1 ID=prot_L-elsbetiae_contig12031.1723.1|Name=mRNA_L-elsbetiae_contig12031.1723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
MEGFNSEVGIPPERAHESVFQFDGDKLSPDDTPEGQDMEDDELIEAKFPE
DLMDGVQASPTEITLVAQKTKKFARKAGKGKGAARSSSAAAVAATAQPLG
SGASQSSQSGTKRRTRGGGSGGGGSGSGCEREVHAMKQPEIVVLD*
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mRNA from alignment at L-elsbetiae_contig12031:4663..5556-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12031.1723.1 ID=mRNA_L-elsbetiae_contig12031.1723.1|Name=mRNA_L-elsbetiae_contig12031.1723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig12031:4663..5556- (Laminarionema elsbetiae ELsaHSoW15)
ACCAAGTTCTCAGCCCTCATGGAAGGTTTCAACAGCGAGGTAGGGATACC
GCCGGAGCGTGCCCACGAGAGCGTCTTCCAGTTTGACGGCGACAAGCTCA
GCCCGGATGATACTCCTGAGGTGAGATAGCGGAACAGCGTCGGAGGGGGG
CTATAAACTACCTTGTGCATCGATGCGTTCGGTCACGTTTTTTTTGTTTT
GCATGCGTCTTATCTTTGGGGGACGTGTGTGAGGGGGGGGCAGCGTTTTG
GTGAGTATGGATCTCAGCTGAGAGAGAGTGGTGGTTGGGTGATGGTGTGT
AAACGTGTAAACCGCACCAGTAAAGAGTTACTAGTGTCAGGTAAGGAACT
TCTTGTGATGTGCGCAGTGCGGCAATTGTTTGCCTTCGCCGGTCACCCCA
GAACGCGAAAAAACTAGATCTAATACTTTGAAGAGGAATAAAGAGGACCA
TAGCGAACCGCAGTTTTTTGTTAGCTCACGGCTGTTCCGCACCCCCTTCC
CCTGAATATGCGGCGCCCCCGACACCCGACCAACCGGGAACAAAACCCAA
ACAACCAGGGCCAAGACATGGAGGATGACGAACTGATCGAAGCCAAGTTC
CCCGAAGACCTCATGGACGGTGTCCAGGCGTCACCGACGGAGATTACGCT
GGTCGCCCAGAAAACGAAAAAGTTCGCGCGGAAAGCGGGGAAGGGGAAGG
GTGCCGCTCGCAGCAGCTCGGCGGCGGCGGTGGCTGCGACGGCGCAGCCC
CTAGGAAGCGGTGCGTCGCAATCATCACAAAGCGGCACGAAAAGGCGCAC
TCGCGGCGGCGGCAGCGGCGGCGGTGGCAGCGGCAGCGGCTGCGAGCGGG
AGGTACACGCAATGAAGCAGCCGGAGATTGTGGTGCTCGACTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12031:4663..5556-

>mRNA_L-elsbetiae_contig12031.1723.1 ID=mRNA_L-elsbetiae_contig12031.1723.1|Name=mRNA_L-elsbetiae_contig12031.1723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig12031:4663..5556- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGGTTTCAACAGCGAGGTAGGGATACCGCCGGAGCGTGCCCACGA
GAGCGTCTTCCAGTTTGACGGCGACAAGCTCAGCCCGGATGATACTCCTG
AGATGGAAGGTTTCAACAGCGAGGTAGGGATACCGCCGGAGCGTGCCCAC
GAGAGCGTCTTCCAGTTTGACGGCGACAAGCTCAGCCCGGATGATACTCC
TGAGGGCCAAGACATGGAGGATGACGAACTGATCGAAGCCAAGTTCCCCG
AAGACCTCATGGACGGTGTCCAGGCGTCACCGACGGAGATTACGCTGGTC
GCCCAGAAAACGAAAAAGTTCGCGCGGAAAGCGGGGAAGGGGAAGGGTGC
CGCTCGCAGCAGCTCGGCGGCGGCGGTGGCTGCGACGGCGCAGCCCCTAG
GAAGCGGTGCGTCGCAATCATCACAAAGCGGCACGAAAAGGCGCACTCGC
GGCGGCGGCAGCGGCGGCGGTGGCAGCGGCAGCGGCTGCGAGCGGGAGGT
ACACGCAATGAAGCAGCCGGAGATTGTGGTGCTCGACTAAGGCCAAGACA
TGGAGGATGACGAACTGATCGAAGCCAAGTTCCCCGAAGACCTCATGGAC
GGTGTCCAGGCGTCACCGACGGAGATTACGCTGGTCGCCCAGAAAACGAA
AAAGTTCGCGCGGAAAGCGGGGAAGGGGAAGGGTGCCGCTCGCAGCAGCT
CGGCGGCGGCGGTGGCTGCGACGGCGCAGCCCCTAGGAAGCGGTGCGTCG
CAATCATCACAAAGCGGCACGAAAAGGCGCACTCGCGGCGGCGGCAGCGG
CGGCGGTGGCAGCGGCAGCGGCTGCGAGCGGGAGGTACACGCAATGAAGC
AGCCGGAGATTGTGGTGCTCGACTAA
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