prot_L-elsbetiae_contig12031.1723.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12031.1723.1
Unique Nameprot_L-elsbetiae_contig12031.1723.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length146
Homology
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BLAST of mRNA_L-elsbetiae_contig12031.1723.1 vs. uniprot
Match: D7G8L3_ECTSI (Rad60-SLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L3_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 5.170e-24
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 0 
Query:    1 MEGFNSEVGIPPERAHESVFQFDGDKLSPDDTPEGQDMEDDELIEAKFPEDLMDGVQASPTEITLVAQKTKKFARK 76
            ME FN +VGIP ERA E VF+FDGDKL+PD TPEG+DME +E+I+AKFP D+M+ VQA+PTE++L A K KK  RK
Sbjct:  178 MEAFNEKVGIPQERASECVFKFDGDKLNPDGTPEGEDMEPEEIIDAKFPADVMNSVQAAPTELSLAAPKKKKVPRK 253
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BLAST of mRNA_L-elsbetiae_contig12031.1723.1 vs. uniprot
Match: A0A6H5L2P0_9PHAE (Rad60-SLD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P0_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.550e-22
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 0 
Query:    1 MEGFNSEVGIPPERAHESVFQFDGDKLSPDDTPEGQDMEDDELIEAKFPEDLMDGVQASPTEITLVAQKTKKFARKA 77
            ME FN +VGIP ERA E VF+FDGDKL+PD TPEG+DME +E+I+AKFP DLM+ VQA+PTE++L A K KK  RKA
Sbjct:  349 MEAFNEKVGIPQERASEGVFKFDGDKLNPDGTPEGEDMESEEIIDAKFPADLMNSVQAAPTELSLGAPK-KKVPRKA 424
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12031.1723.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8L3_ECTSI5.170e-2465.79Rad60-SLD domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L2P0_9PHAE1.550e-2267.53Rad60-SLD domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 1..47
e-value: 3.6E-7
score: 32.0
IPR022617Rad60/SUMO-like domainPFAMPF11976Rad60-SLDcoord: 1..46
e-value: 3.5E-8
score: 33.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12031contigL-elsbetiae_contig12031:4663..5538 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12031.1723.1mRNA_L-elsbetiae_contig12031.1723.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12031 4663..5556 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12031.1723.1 ID=prot_L-elsbetiae_contig12031.1723.1|Name=mRNA_L-elsbetiae_contig12031.1723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
MEGFNSEVGIPPERAHESVFQFDGDKLSPDDTPEGQDMEDDELIEAKFPE
DLMDGVQASPTEITLVAQKTKKFARKAGKGKGAARSSSAAAVAATAQPLG
SGASQSSQSGTKRRTRGGGSGGGGSGSGCEREVHAMKQPEIVVLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022617Rad60/SUMO-like_dom